Wall clock time and date at job start Tue Mar 31 2020 08:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.04809 * 12 2 1 14 14 C 1.46899 * 110.99859 * 69.99981 * 12 2 1 15 15 C 1.50700 * 109.47085 * 170.00077 * 14 12 2 16 16 O 1.21281 * 119.99772 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00330 * 179.97438 * 15 14 12 18 18 C 1.46496 * 120.00177 * 179.97438 * 17 15 14 19 19 H 1.08994 * 109.47557 * 325.00268 * 18 17 15 20 20 C 1.53008 * 109.47120 * 85.00255 * 18 17 15 21 21 C 1.50701 * 109.47257 * 205.00101 * 18 17 15 22 22 C 1.38235 * 120.00017 * 319.72602 * 21 18 17 23 23 C 1.38229 * 120.00065 * 179.80729 * 22 21 18 24 24 C 1.38230 * 119.99993 * 0.40489 * 23 22 21 25 25 C 1.38232 * 120.00373 * 359.85068 * 24 23 22 26 26 C 1.38228 * 120.00161 * 140.00276 * 21 18 17 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47009 * 60.00040 * 13 12 2 32 32 H 1.08999 * 109.47192 * 180.02562 * 13 12 2 33 33 H 1.09002 * 109.46724 * 300.00378 * 13 12 2 34 34 H 1.09006 * 109.47401 * 289.99825 * 14 12 2 35 35 H 1.09000 * 109.47534 * 50.00268 * 14 12 2 36 36 H 0.97000 * 119.99576 * 0.02562 * 17 15 14 37 37 H 1.09001 * 109.46982 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.46776 * 300.00033 * 20 18 17 39 39 H 1.08994 * 109.46895 * 59.99608 * 20 18 17 40 40 H 1.08007 * 119.99589 * 0.02562 * 22 21 18 41 41 H 1.08003 * 120.00011 * 180.23140 * 23 22 21 42 42 H 1.08007 * 120.00007 * 179.83328 * 24 23 22 43 43 H 1.07998 * 120.01002 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99751 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4774 -0.5160 -3.5795 16 8 3.1501 -1.5127 -3.4215 17 7 2.3778 0.0430 -4.8018 18 6 3.0825 -0.5530 -5.9394 19 1 4.0332 -0.9657 -5.6022 20 6 2.2267 -1.6694 -6.5414 21 6 3.3358 0.5041 -6.9832 22 6 2.3617 1.4432 -7.2664 23 6 2.5956 2.4153 -8.2210 24 6 3.8002 2.4431 -8.8984 25 6 4.7722 1.5009 -8.6190 26 6 4.5399 0.5312 -7.6616 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7089 1.1611 3.4845 31 1 0.3490 -1.9547 -1.3696 32 1 1.8139 -2.5259 -2.2043 33 1 1.7058 -2.6220 -0.4304 34 1 0.6813 0.1055 -2.6088 35 1 2.1025 1.1191 -2.2603 36 1 1.8400 0.8404 -4.9280 37 1 2.7513 -2.1132 -7.3876 38 1 2.0436 -2.4340 -5.7864 39 1 1.2760 -1.2567 -6.8787 40 1 1.4194 1.4196 -6.7392 41 1 1.8360 3.1513 -8.4395 42 1 3.9818 3.2010 -9.6461 43 1 5.7133 1.5223 -9.1485 44 1 5.2993 -0.2051 -7.4432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129636468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:32 Heat of formation + Delta-G solvation = -0.878622 kcal Electronic energy + Delta-G solvation = -22903.528933 eV Core-core repulsion = 19628.053535 eV Total energy + Delta-G solvation = -3275.475398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -40.16492 -39.04193 -36.78540 -35.31526 -32.66595 -31.87190 -31.12172 -29.56146 -28.85299 -27.19105 -25.19796 -24.43528 -23.53970 -22.91824 -21.06716 -20.08007 -19.19537 -17.56351 -16.67507 -16.13137 -15.88071 -15.37513 -15.10523 -14.81626 -14.64539 -14.06505 -13.89909 -13.76014 -13.63033 -13.39749 -13.06387 -12.66008 -12.48774 -12.36235 -12.30865 -11.78050 -11.52904 -11.31159 -11.02758 -10.99289 -10.87052 -10.78003 -10.65287 -10.43201 -10.05342 -9.94817 -9.29954 -9.19312 -9.08693 -8.90811 -8.80713 -8.35640 -7.09773 -5.98334 -4.00809 1.05286 1.12803 3.02794 3.25441 3.34515 3.40707 3.46712 3.57010 4.37604 4.45855 4.60787 4.72535 4.84892 5.08585 5.13565 5.14882 5.20161 5.31185 5.31661 5.34442 5.55891 5.70687 5.71608 5.82207 5.85337 5.89033 6.06290 6.18604 6.24160 6.28057 6.38216 6.46278 6.62270 6.71191 6.71448 6.83037 7.01701 7.10878 7.42200 7.66624 7.72865 7.88968 8.14130 8.39695 8.55764 8.64730 9.05888 9.63981 11.09134 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.002935 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.144587 B = 9536.136485 C = 9740.027983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.517 5.517 13 C 0.031 3.969 14 C 0.037 3.963 15 C 0.516 3.484 16 O -0.518 6.518 17 N -0.736 5.736 18 C 0.183 3.817 19 H 0.095 0.905 20 C -0.157 4.157 21 C -0.086 4.086 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.109 4.109 27 H 0.089 0.911 28 H 0.005 0.995 29 H 0.033 0.967 30 H 0.260 0.740 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 2.648 -23.125 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.240 5.240 13 C -0.117 4.117 14 C -0.095 4.095 15 C 0.303 3.697 16 O -0.391 6.391 17 N -0.392 5.392 18 C 0.078 3.922 19 H 0.113 0.887 20 C -0.215 4.215 21 C -0.087 4.087 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.127 4.127 27 H 0.108 0.892 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.508 1.957 -22.774 22.995 hybrid contribution -0.953 0.231 0.666 1.185 sum 1.555 2.188 -22.108 22.271 Atomic orbital electron populations 1.22429 1.00822 0.99571 1.00433 1.19374 0.89744 0.94470 0.85953 0.94348 1.21110 1.30315 1.12459 0.89459 0.91807 1.24922 0.95300 0.95159 0.98992 1.69883 1.37332 1.23132 1.23358 0.86502 0.79330 0.79240 0.82391 1.20839 1.19784 1.21343 1.62099 1.59077 1.02316 1.00542 1.22356 0.95505 0.91536 1.02302 1.21929 0.97657 0.99056 0.90887 1.21055 0.81150 0.84175 0.83303 1.90642 1.39502 1.24902 1.84100 1.46245 1.52820 1.32037 1.08048 1.19708 0.97245 0.91132 0.84078 0.88664 1.22157 0.99828 0.98374 1.01136 1.20011 0.94511 0.96625 0.97546 1.20959 0.98930 0.95154 0.98191 1.21142 0.97408 0.98491 0.96439 1.21176 0.93972 0.98997 0.99975 1.21152 0.99287 0.95172 0.97932 1.21048 0.96423 0.98860 0.96385 0.89217 0.97612 0.94788 0.93064 0.96956 0.92134 0.91084 0.92944 0.88710 0.76892 0.91765 0.91441 0.92444 0.86033 0.85939 0.86127 0.85946 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.22 37.16 0.31 -3.84 16 2 C 0.21 5.33 2.31 -68.87 -0.16 5.17 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.49 -13.83 7.97 -34.44 -0.27 -14.11 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 N -0.52 -11.63 4.44 -237.72 -1.06 -12.68 16 13 C 0.03 0.67 8.46 60.07 0.51 1.18 16 14 C 0.04 0.66 5.02 -4.98 -0.02 0.63 16 15 C 0.52 8.65 7.49 -10.99 -0.08 8.56 16 16 O -0.52 -10.51 14.00 5.56 0.08 -10.43 16 17 N -0.74 -9.16 5.03 -54.93 -0.28 -9.44 16 18 C 0.18 2.08 2.78 -69.08 -0.19 1.89 16 19 H 0.10 1.25 7.44 -51.93 -0.39 0.86 16 20 C -0.16 -1.64 9.46 37.16 0.35 -1.29 16 21 C -0.09 -0.85 4.95 -104.63 -0.52 -1.37 16 22 C -0.11 -1.01 9.05 -39.59 -0.36 -1.36 16 23 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 24 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 25 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.11 -1.00 9.67 -39.58 -0.38 -1.38 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.00 0.11 6.91 -51.93 -0.36 -0.25 16 29 H 0.03 0.80 6.33 -51.93 -0.33 0.47 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.01 0.25 6.21 -51.93 -0.32 -0.07 16 32 H 0.06 1.25 5.83 -51.93 -0.30 0.95 16 33 H 0.07 1.62 6.86 -51.93 -0.36 1.26 16 34 H 0.05 0.87 7.06 -51.93 -0.37 0.51 16 35 H 0.09 1.61 7.93 -51.93 -0.41 1.20 16 36 H 0.40 3.97 6.89 -40.82 -0.28 3.69 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.12 0.91 6.93 -52.48 -0.36 0.54 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.12 1.01 8.04 -52.48 -0.42 0.59 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -31.68 350.88 -9.15 -40.82 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.67 Total: 3.16 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.11 Total: -8.46 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.70 Total: -47.08 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.68 -9.15 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129636468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.943 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds