Wall clock time and date at job start Tue Mar 31 2020 08:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.04809 * 12 2 1 14 14 C 1.46899 * 110.99859 * 69.99981 * 12 2 1 15 15 C 1.50700 * 109.47085 * 170.00077 * 14 12 2 16 16 O 1.21281 * 119.99772 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00330 * 179.97438 * 15 14 12 18 18 C 1.46496 * 120.00177 * 179.97438 * 17 15 14 19 19 H 1.08994 * 109.47557 * 325.00268 * 18 17 15 20 20 C 1.53008 * 109.47120 * 85.00255 * 18 17 15 21 21 C 1.50701 * 109.47257 * 205.00101 * 18 17 15 22 22 C 1.38235 * 120.00017 * 319.72602 * 21 18 17 23 23 C 1.38229 * 120.00065 * 179.80729 * 22 21 18 24 24 C 1.38230 * 119.99993 * 0.40489 * 23 22 21 25 25 C 1.38232 * 120.00373 * 359.85068 * 24 23 22 26 26 C 1.38228 * 120.00161 * 140.00276 * 21 18 17 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47009 * 60.00040 * 13 12 2 32 32 H 1.08999 * 109.47192 * 180.02562 * 13 12 2 33 33 H 1.09002 * 109.46724 * 300.00378 * 13 12 2 34 34 H 1.09006 * 109.47401 * 289.99825 * 14 12 2 35 35 H 1.09000 * 109.47534 * 50.00268 * 14 12 2 36 36 H 0.97000 * 119.99576 * 0.02562 * 17 15 14 37 37 H 1.09001 * 109.46982 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.46776 * 300.00033 * 20 18 17 39 39 H 1.08994 * 109.46895 * 59.99608 * 20 18 17 40 40 H 1.08007 * 119.99589 * 0.02562 * 22 21 18 41 41 H 1.08003 * 120.00011 * 180.23140 * 23 22 21 42 42 H 1.08007 * 120.00007 * 179.83328 * 24 23 22 43 43 H 1.07998 * 120.01002 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99751 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4774 -0.5160 -3.5795 16 8 3.1501 -1.5127 -3.4215 17 7 2.3778 0.0430 -4.8018 18 6 3.0825 -0.5530 -5.9394 19 1 4.0332 -0.9657 -5.6022 20 6 2.2267 -1.6694 -6.5414 21 6 3.3358 0.5041 -6.9832 22 6 2.3617 1.4432 -7.2664 23 6 2.5956 2.4153 -8.2210 24 6 3.8002 2.4431 -8.8984 25 6 4.7722 1.5009 -8.6190 26 6 4.5399 0.5312 -7.6616 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7089 1.1611 3.4845 31 1 0.3490 -1.9547 -1.3696 32 1 1.8139 -2.5259 -2.2043 33 1 1.7058 -2.6220 -0.4304 34 1 0.6813 0.1055 -2.6088 35 1 2.1025 1.1191 -2.2603 36 1 1.8400 0.8404 -4.9280 37 1 2.7513 -2.1132 -7.3876 38 1 2.0436 -2.4340 -5.7864 39 1 1.2760 -1.2567 -6.8787 40 1 1.4194 1.4196 -6.7392 41 1 1.8360 3.1513 -8.4395 42 1 3.9818 3.2010 -9.6461 43 1 5.7133 1.5223 -9.1485 44 1 5.2993 -0.2051 -7.4432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129636468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:31 Heat of formation + Delta-G solvation = -20.840568 kcal Electronic energy + Delta-G solvation = -22904.394548 eV Core-core repulsion = 19628.053535 eV Total energy + Delta-G solvation = -3276.341013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22104 -40.05087 -38.42629 -36.43555 -34.68455 -32.90482 -31.76657 -30.94207 -30.11915 -28.73474 -27.26225 -25.90558 -24.61898 -23.62817 -22.11834 -21.24586 -20.90052 -18.67565 -18.05698 -17.74737 -16.90672 -16.73029 -16.45674 -16.07151 -15.81493 -15.56122 -15.17212 -14.98374 -14.55753 -14.32891 -14.28330 -14.21998 -13.95731 -13.43561 -13.37102 -13.09170 -12.89394 -12.72998 -12.58074 -12.55277 -12.53014 -12.19451 -12.04619 -11.95207 -11.89107 -11.74553 -11.00531 -10.63520 -10.47959 -10.14608 -9.81506 -9.65577 -8.83452 -8.10623 -6.20057 0.39325 0.50393 1.42201 1.43251 1.54358 1.69755 2.12991 2.45111 2.89561 3.18573 3.47513 3.58509 3.92560 3.96925 4.14112 4.29016 4.31014 4.33161 4.39513 4.44420 4.61768 4.62281 4.65121 4.71643 4.75166 4.84757 4.91507 4.93873 5.05583 5.12412 5.15243 5.21030 5.24050 5.44519 5.51511 5.57237 5.63843 5.71439 5.71862 5.81247 6.10343 6.19104 6.47558 6.50741 6.75928 6.91870 7.33651 7.48733 8.95396 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.002935 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.144587 B = 9536.136485 C = 9740.027983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.216 3.784 3 H 0.014 0.986 4 C -0.516 4.516 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.281 1.281 12 N -0.537 5.537 13 C 0.043 3.957 14 C 0.036 3.964 15 C 0.521 3.479 16 O -0.559 6.559 17 N -0.716 5.716 18 C 0.185 3.815 19 H 0.074 0.926 20 C -0.150 4.150 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.411 0.589 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 3.518 -24.793 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.555 4.555 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.206 1.206 12 N -0.261 5.261 13 C -0.105 4.105 14 C -0.096 4.096 15 C 0.308 3.692 16 O -0.436 6.436 17 N -0.371 5.371 18 C 0.081 3.919 19 H 0.092 0.908 20 C -0.208 4.208 21 C -0.100 4.100 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.142 4.142 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.041 2.856 -24.488 24.738 hybrid contribution -0.785 0.027 1.060 1.320 sum 1.257 2.884 -23.427 23.637 Atomic orbital electron populations 1.22216 0.99734 0.99393 1.00521 1.19129 0.90424 0.92973 0.86530 0.96771 1.21345 1.30578 1.12383 0.91152 0.93345 1.25610 0.95431 0.95828 1.01529 1.69984 1.37822 1.23937 1.24033 0.85585 0.78683 0.78364 0.79160 1.20089 1.19992 1.20614 1.61912 1.59754 1.02975 1.01450 1.22213 0.95904 0.90925 1.01476 1.21985 0.99142 0.98846 0.89606 1.20794 0.80614 0.83680 0.84147 1.90630 1.41406 1.26764 1.84837 1.46043 1.52055 1.31896 1.07067 1.19707 0.96256 0.92023 0.83903 0.90832 1.22091 1.00463 0.97462 1.00819 1.19887 0.95455 0.96933 0.97758 1.21144 0.99126 0.95067 0.98633 1.21452 0.98078 0.98536 0.95906 1.21532 0.93661 0.99110 1.00053 1.21425 1.00302 0.94790 0.97620 1.21216 0.96426 0.99563 0.96966 0.91751 0.94767 0.94951 0.92881 0.96020 0.91494 0.93282 0.90891 0.87825 0.75180 0.90418 0.93630 0.91141 0.84854 0.83859 0.83910 0.84130 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.22 71.98 0.59 -6.95 16 2 C 0.22 11.04 2.31 44.17 0.10 11.14 16 3 H 0.01 0.79 7.93 -2.39 -0.02 0.78 16 4 C -0.52 -29.32 7.97 25.60 0.20 -29.12 16 5 H 0.05 2.84 7.10 -2.91 -0.02 2.82 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 8 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 N -0.54 -24.24 4.44 -906.02 -4.02 -28.26 16 13 C 0.04 1.85 8.46 127.69 1.08 2.93 16 14 C 0.04 1.24 5.02 85.56 0.43 1.67 16 15 C 0.52 17.15 7.49 87.66 0.66 17.80 16 16 O -0.56 -22.92 14.00 -3.03 -0.04 -22.96 16 17 N -0.72 -16.97 5.03 -446.10 -2.24 -19.21 16 18 C 0.19 4.10 2.78 44.25 0.12 4.22 16 19 H 0.07 1.97 7.44 -2.39 -0.02 1.95 16 20 C -0.15 -3.00 9.46 71.98 0.68 -2.32 16 21 C -0.10 -1.84 4.95 -19.87 -0.10 -1.94 16 22 C -0.12 -1.87 9.05 22.27 0.20 -1.67 16 23 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 24 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 25 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 26 C -0.12 -2.13 9.67 22.27 0.22 -1.92 16 27 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 28 H 0.03 1.37 6.91 -2.38 -0.02 1.36 16 29 H 0.03 1.50 6.33 -2.39 -0.02 1.48 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.02 0.87 6.21 -2.39 -0.01 0.86 16 32 H 0.07 2.78 5.83 -2.39 -0.01 2.77 16 33 H 0.05 2.28 6.86 -2.39 -0.02 2.26 16 34 H 0.07 2.26 7.06 -2.38 -0.02 2.24 16 35 H 0.10 3.41 7.93 -2.39 -0.02 3.39 16 36 H 0.41 7.38 6.89 -92.71 -0.64 6.74 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.13 1.63 6.93 -2.91 -0.02 1.61 16 41 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 44 H 0.13 2.01 8.04 -2.91 -0.02 1.99 16 Total: -1.00 -68.36 350.88 1.62 -66.74 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.36 Total: 18.40 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.31 Total: -9.19 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -6.02 Total: -99.79 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.04 Total: -22.96 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.36 1.62 -66.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129636468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.897 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds