Wall clock time and date at job start Tue Mar 31 2020 08:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46905 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00423 * 2 1 3 5 5 H 1.08002 * 119.99953 * 120.00005 * 4 2 1 6 6 C 1.37869 * 119.99967 * 299.99726 * 4 2 1 7 7 N 1.31516 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46898 * 60.00316 * 8 6 4 10 10 H 1.48503 * 109.47191 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47509 * 300.00396 * 8 6 4 12 12 N 1.46900 * 109.46816 * 240.00522 * 2 1 3 13 13 C 1.46902 * 110.99847 * 183.95649 * 12 2 1 14 14 C 1.46897 * 111.00180 * 59.99950 * 12 2 1 15 15 C 1.53001 * 109.47092 * 189.99890 * 14 12 2 16 16 C 1.50697 * 109.47205 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00275 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99810 * 354.72424 * 18 16 15 20 20 C 1.39925 * 120.00212 * 174.71903 * 18 16 15 21 21 C 1.38864 * 120.07321 * 246.90227 * 20 18 16 22 22 C 1.38111 * 119.93195 * 179.79157 * 21 20 18 23 23 C 1.38285 * 120.06648 * 0.48542 * 22 21 20 24 24 C 1.38281 * 120.14258 * 359.74213 * 23 22 21 25 25 C 1.38108 * 120.07082 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.46661 * 299.99639 * 1 2 3 27 27 H 1.09000 * 109.47038 * 59.99623 * 1 2 3 28 28 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99987 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46778 * 296.04056 * 13 12 2 31 31 H 1.08996 * 109.47470 * 56.04228 * 13 12 2 32 32 H 1.08999 * 109.47342 * 176.04858 * 13 12 2 33 33 H 1.08998 * 109.47049 * 309.99507 * 14 12 2 34 34 H 1.08999 * 109.47272 * 70.00041 * 14 12 2 35 35 H 1.09003 * 109.47299 * 299.99908 * 15 14 12 36 36 H 1.09004 * 109.47369 * 59.99786 * 15 14 12 37 37 H 1.09003 * 109.46617 * 89.99944 * 19 18 16 38 38 H 1.08996 * 109.46834 * 209.99707 * 19 18 16 39 39 H 1.08999 * 109.47021 * 329.99938 * 19 18 16 40 40 H 1.08007 * 120.03630 * 0.02562 * 21 20 18 41 41 H 1.08000 * 119.97083 * 180.22975 * 22 21 20 42 42 H 1.08000 * 119.92359 * 179.72452 * 23 22 21 43 43 H 1.07999 * 119.96504 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.03832 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8271 -0.4202 5.2204 11 1 1.8259 -2.5205 4.0075 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0262 -2.4211 15 6 1.8626 -0.9041 -3.6342 16 6 1.3800 -0.2204 -4.8874 17 8 0.8377 0.8623 -4.8173 18 7 1.5508 -0.8119 -6.0863 19 6 2.3070 -2.0629 -6.1848 20 6 1.0060 -0.2314 -7.2370 21 6 -0.0218 -0.8697 -7.9186 22 6 -0.5603 -0.2920 -9.0516 23 6 -0.0703 0.9160 -9.5130 24 6 0.9562 1.5519 -8.8393 25 6 1.4958 0.9817 -7.7030 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7083 1.1606 3.4845 30 1 3.9192 0.2044 -1.2301 31 1 3.8070 -1.2915 -0.2721 32 1 3.8164 -1.3720 -2.0502 33 1 0.4722 0.1325 -2.3563 34 1 2.0519 0.9347 -2.5280 35 1 2.9391 -1.0629 -3.6990 36 1 1.3594 -1.8651 -3.5273 37 1 1.6281 -2.9078 -6.0688 38 1 2.7926 -2.1181 -7.1590 39 1 3.0625 -2.0935 -5.3997 40 1 -0.4022 -1.8152 -7.5610 41 1 -1.3622 -0.7861 -9.5801 42 1 -0.4902 1.3635 -10.4018 43 1 1.3364 2.4954 -9.2020 44 1 2.2978 1.4786 -7.1774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135148498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:13 Heat of formation + Delta-G solvation = 7.668974 kcal Electronic energy + Delta-G solvation = -22875.135146 eV Core-core repulsion = 19600.030399 eV Total energy + Delta-G solvation = -3275.104747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.59604 -38.66597 -36.97980 -35.57334 -33.10843 -31.31491 -31.12505 -29.85929 -28.82988 -26.89803 -25.90509 -24.37717 -23.24986 -22.73941 -21.56625 -19.48437 -19.13443 -17.54342 -16.82745 -16.31941 -16.19141 -16.09678 -15.24259 -14.75562 -14.53104 -14.09059 -13.90645 -13.61567 -13.41178 -13.30896 -12.87962 -12.84490 -12.67350 -12.59128 -12.22659 -11.77100 -11.69907 -11.41198 -11.23464 -11.03351 -10.86366 -10.68942 -10.28941 -10.06907 -9.99572 -9.82809 -9.72272 -9.44574 -9.13617 -8.83263 -8.56023 -8.39071 -7.17005 -5.97766 -4.02839 1.07015 1.20016 2.63602 2.80157 3.33414 3.38034 3.40318 3.54914 4.41284 4.61952 4.73585 4.76159 4.85113 4.90966 5.12387 5.16338 5.21558 5.32526 5.33310 5.40779 5.41928 5.44570 5.57935 5.80484 5.89285 6.12107 6.13288 6.26966 6.29124 6.29986 6.41460 6.47748 6.55998 6.77441 6.88791 6.94592 7.12031 7.16355 7.21510 7.57428 7.75774 7.85211 8.17258 8.23805 8.35594 8.62435 9.03151 9.61838 11.09025 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.037591 B = 0.002860 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.685903 B = 9788.605755 C =10067.863419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.539 5.539 13 C 0.034 3.966 14 C 0.065 3.935 15 C -0.131 4.131 16 C 0.517 3.483 17 O -0.521 6.521 18 N -0.586 5.586 19 C 0.081 3.919 20 C 0.145 3.855 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.105 4.105 26 H 0.085 0.915 27 H 0.010 0.990 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.010 0.990 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -4.571 -23.232 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.264 5.264 13 C -0.115 4.115 14 C -0.064 4.064 15 C -0.171 4.171 16 C 0.307 3.693 17 O -0.395 6.395 18 N -0.318 5.318 19 C -0.061 4.061 20 C 0.055 3.945 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.125 4.125 26 H 0.103 0.897 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.160 -4.347 -22.962 23.398 hybrid contribution 0.659 0.303 0.811 1.088 sum 1.819 -4.044 -22.151 22.590 Atomic orbital electron populations 1.21862 0.97712 0.99605 1.00054 1.19224 0.92377 0.92028 0.85628 0.98377 1.21113 1.31140 1.12282 0.89771 0.91883 1.24942 0.95239 0.95090 0.99016 1.69895 1.36782 1.23012 1.23496 0.86580 0.79014 0.79740 0.82152 1.20386 1.21386 1.20230 1.62135 1.09110 1.52871 1.02279 1.22271 0.89068 0.98793 1.01361 1.21835 1.01935 0.93866 0.88732 1.21737 1.02592 1.01294 0.91450 1.21197 0.78319 0.85469 0.84309 1.90729 1.41857 1.20567 1.86331 1.45561 1.54921 1.25841 1.05438 1.21885 0.95996 0.84860 1.03402 1.17616 0.94621 0.94117 0.88184 1.21233 0.95435 1.01005 0.96521 1.21014 0.99842 0.95903 0.96317 1.21178 0.97238 0.95630 1.00199 1.21052 0.96849 0.99805 0.95231 1.21277 0.99981 0.95384 0.95856 0.89662 0.97071 0.94721 0.92926 0.97122 0.90350 0.93983 0.90001 0.95379 0.89034 0.88030 0.92064 0.90981 0.90024 0.85805 0.85711 0.85925 0.85725 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.76 37.16 0.33 -3.09 16 2 C 0.21 5.53 2.06 -68.86 -0.14 5.39 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -13.89 7.88 -34.44 -0.27 -14.16 16 5 H 0.06 1.70 6.41 -52.49 -0.34 1.37 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.54 -11.71 4.62 -236.28 -1.09 -12.80 16 13 C 0.03 0.65 9.04 60.07 0.54 1.19 16 14 C 0.07 1.27 4.06 -3.82 -0.02 1.25 16 15 C -0.13 -1.91 4.30 -27.88 -0.12 -2.03 16 16 C 0.52 7.94 7.55 -10.99 -0.08 7.86 16 17 O -0.52 -10.11 15.54 5.55 0.09 -10.03 16 18 N -0.59 -7.11 2.93 -120.82 -0.35 -7.46 16 19 C 0.08 0.64 10.10 59.85 0.60 1.25 16 20 C 0.14 1.78 4.83 -83.69 -0.40 1.38 16 21 C -0.12 -1.29 9.85 -39.40 -0.39 -1.68 16 22 C -0.11 -1.02 10.04 -39.61 -0.40 -1.42 16 23 C -0.12 -1.11 10.04 -39.55 -0.40 -1.50 16 24 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.11 -1.27 9.31 -39.39 -0.37 -1.64 16 26 H 0.08 2.35 6.07 -51.93 -0.32 2.04 16 27 H 0.01 0.25 6.20 -51.93 -0.32 -0.07 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 1.62 6.10 -51.93 -0.32 1.30 16 32 H 0.04 0.65 6.47 -51.93 -0.34 0.32 16 33 H 0.08 1.73 5.79 -51.93 -0.30 1.43 16 34 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.09 1.16 5.65 -51.93 -0.29 0.87 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 39 H 0.08 0.58 6.48 -51.93 -0.34 0.24 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -32.52 353.04 -8.79 -41.31 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.76 Total: -0.28 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.60 Total: -7.16 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.82 Total: -45.52 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.52 -8.79 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135148498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.979 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds