Wall clock time and date at job start Tue Mar 31 2020 08:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46905 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00423 * 2 1 3 5 5 H 1.08002 * 119.99953 * 120.00005 * 4 2 1 6 6 C 1.37869 * 119.99967 * 299.99726 * 4 2 1 7 7 N 1.31516 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46898 * 60.00316 * 8 6 4 10 10 H 1.48503 * 109.47191 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47509 * 300.00396 * 8 6 4 12 12 N 1.46900 * 109.46816 * 240.00522 * 2 1 3 13 13 C 1.46902 * 110.99847 * 183.95649 * 12 2 1 14 14 C 1.46897 * 111.00180 * 59.99950 * 12 2 1 15 15 C 1.53001 * 109.47092 * 189.99890 * 14 12 2 16 16 C 1.50697 * 109.47205 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00275 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99810 * 354.72424 * 18 16 15 20 20 C 1.39925 * 120.00212 * 174.71903 * 18 16 15 21 21 C 1.38864 * 120.07321 * 246.90227 * 20 18 16 22 22 C 1.38111 * 119.93195 * 179.79157 * 21 20 18 23 23 C 1.38285 * 120.06648 * 0.48542 * 22 21 20 24 24 C 1.38281 * 120.14258 * 359.74213 * 23 22 21 25 25 C 1.38108 * 120.07082 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.46661 * 299.99639 * 1 2 3 27 27 H 1.09000 * 109.47038 * 59.99623 * 1 2 3 28 28 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99987 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46778 * 296.04056 * 13 12 2 31 31 H 1.08996 * 109.47470 * 56.04228 * 13 12 2 32 32 H 1.08999 * 109.47342 * 176.04858 * 13 12 2 33 33 H 1.08998 * 109.47049 * 309.99507 * 14 12 2 34 34 H 1.08999 * 109.47272 * 70.00041 * 14 12 2 35 35 H 1.09003 * 109.47299 * 299.99908 * 15 14 12 36 36 H 1.09004 * 109.47369 * 59.99786 * 15 14 12 37 37 H 1.09003 * 109.46617 * 89.99944 * 19 18 16 38 38 H 1.08996 * 109.46834 * 209.99707 * 19 18 16 39 39 H 1.08999 * 109.47021 * 329.99938 * 19 18 16 40 40 H 1.08007 * 120.03630 * 0.02562 * 21 20 18 41 41 H 1.08000 * 119.97083 * 180.22975 * 22 21 20 42 42 H 1.08000 * 119.92359 * 179.72452 * 23 22 21 43 43 H 1.07999 * 119.96504 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.03832 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0080 10 1 1.8271 -0.4202 5.2204 11 1 1.8259 -2.5205 4.0075 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0262 -2.4211 15 6 1.8626 -0.9041 -3.6342 16 6 1.3800 -0.2204 -4.8874 17 8 0.8377 0.8623 -4.8173 18 7 1.5508 -0.8119 -6.0863 19 6 2.3070 -2.0629 -6.1848 20 6 1.0060 -0.2314 -7.2370 21 6 -0.0218 -0.8697 -7.9186 22 6 -0.5603 -0.2920 -9.0516 23 6 -0.0703 0.9160 -9.5130 24 6 0.9562 1.5519 -8.8393 25 6 1.4958 0.9817 -7.7030 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7083 1.1606 3.4845 30 1 3.9192 0.2044 -1.2301 31 1 3.8070 -1.2915 -0.2721 32 1 3.8164 -1.3720 -2.0502 33 1 0.4722 0.1325 -2.3563 34 1 2.0519 0.9347 -2.5280 35 1 2.9391 -1.0629 -3.6990 36 1 1.3594 -1.8651 -3.5273 37 1 1.6281 -2.9078 -6.0688 38 1 2.7926 -2.1181 -7.1590 39 1 3.0625 -2.0935 -5.3997 40 1 -0.4022 -1.8152 -7.5610 41 1 -1.3622 -0.7861 -9.5801 42 1 -0.4902 1.3635 -10.4018 43 1 1.3364 2.4954 -9.2020 44 1 2.2978 1.4786 -7.1774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135148498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:12 Heat of formation + Delta-G solvation = -12.383691 kcal Electronic energy + Delta-G solvation = -22876.004695 eV Core-core repulsion = 19600.030399 eV Total energy + Delta-G solvation = -3275.974296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.60680 -39.66759 -38.66522 -36.57512 -35.05893 -32.72252 -31.89206 -31.14474 -30.43538 -27.89189 -27.49562 -26.18056 -24.57379 -23.54084 -22.86962 -21.13948 -20.35368 -18.53021 -18.32027 -17.92736 -17.26402 -17.08833 -16.80915 -16.12111 -15.67552 -15.44336 -15.29691 -15.02650 -14.52347 -14.34262 -14.23328 -14.07378 -13.83733 -13.60233 -13.55497 -13.21982 -12.93007 -12.80815 -12.59819 -12.58432 -12.48968 -12.17445 -12.13161 -12.05089 -11.94790 -11.49573 -11.01103 -10.86666 -10.50752 -10.31510 -9.90937 -9.42002 -9.00423 -8.10161 -6.23223 0.27800 0.42809 1.44160 1.46696 1.48874 1.54119 1.86296 2.43590 2.78353 3.17226 3.29214 3.74330 3.98555 3.99703 4.04177 4.12654 4.23711 4.25287 4.50634 4.51513 4.55040 4.58904 4.67341 4.70278 4.73756 4.80596 4.90605 4.96051 5.02297 5.03794 5.06580 5.08674 5.29658 5.39233 5.47543 5.49407 5.55710 5.63227 5.71785 5.76396 6.07630 6.19513 6.23175 6.37003 6.67861 6.91502 7.08267 7.46120 8.96350 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.037591 B = 0.002860 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.685903 B = 9788.605755 C =10067.863419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.215 3.785 3 H -0.045 1.045 4 C -0.518 4.518 5 H 0.068 0.932 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.268 1.268 12 N -0.537 5.537 13 C 0.034 3.966 14 C 0.071 3.929 15 C -0.115 4.115 16 C 0.515 3.485 17 O -0.575 6.575 18 N -0.576 5.576 19 C 0.071 3.929 20 C 0.117 3.883 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.130 4.130 26 H 0.060 0.940 27 H 0.020 0.980 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.000 1.000 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.007 0.993 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.142 0.858 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -6.895 -24.967 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.108 3.892 3 H -0.027 1.027 4 C -0.556 4.556 5 H 0.086 0.914 6 C -0.192 4.192 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.262 5.262 13 C -0.114 4.114 14 C -0.058 4.058 15 C -0.155 4.155 16 C 0.306 3.694 17 O -0.453 6.453 18 N -0.306 5.306 19 C -0.069 4.069 20 C 0.027 3.973 21 C -0.150 4.150 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.150 4.150 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.160 0.840 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.684 -6.722 -24.748 25.700 hybrid contribution 0.497 1.054 1.210 1.680 sum 2.181 -5.669 -23.538 24.309 Atomic orbital electron populations 1.21679 0.97662 0.99369 0.99301 1.19041 0.92494 0.90052 0.87587 1.02736 1.21410 1.31225 1.12439 0.90545 0.91387 1.25816 0.95350 0.95761 1.02251 1.70050 1.37861 1.24444 1.24134 0.85495 0.78751 0.78670 0.78010 1.19421 1.21311 1.19314 1.62107 1.10716 1.51834 1.01508 1.22341 0.87334 0.98859 1.02881 1.21742 1.00190 0.94085 0.89812 1.21576 1.04478 1.00566 0.88865 1.21261 0.77847 0.84891 0.85447 1.90707 1.44586 1.22866 1.87175 1.45556 1.54138 1.26483 1.04427 1.22209 0.96407 0.83408 1.04880 1.17888 0.95964 0.94810 0.88621 1.21437 0.94997 1.01557 0.96978 1.21413 0.99987 0.95878 0.95714 1.21568 0.96343 0.95425 1.00728 1.21333 0.97107 1.00525 0.94644 1.21346 1.00623 0.95898 0.97101 0.92167 0.96073 0.94453 0.92981 0.98122 0.91633 0.89262 0.92254 0.97521 0.86285 0.86047 0.90274 0.89462 0.88757 0.84610 0.82863 0.83007 0.84043 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.40 8.76 71.98 0.63 -5.77 16 2 C 0.22 11.50 2.06 44.17 0.09 11.59 16 3 H -0.04 -2.73 8.14 -2.39 -0.02 -2.75 16 4 C -0.52 -28.77 7.88 25.60 0.20 -28.57 16 5 H 0.07 3.64 6.41 -2.91 -0.02 3.62 16 6 C 0.01 0.36 5.30 84.65 0.45 0.81 16 7 N -0.93 -54.96 11.32 21.44 0.24 -54.72 16 8 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 N -0.54 -23.29 4.62 -901.47 -4.17 -27.46 16 13 C 0.03 1.27 9.04 127.69 1.15 2.43 16 14 C 0.07 2.77 4.06 86.30 0.35 3.12 16 15 C -0.12 -3.19 4.30 29.85 0.13 -3.06 16 16 C 0.52 15.65 7.55 87.66 0.66 16.31 16 17 O -0.57 -23.14 15.54 -3.06 -0.05 -23.19 16 18 N -0.58 -13.31 2.93 -654.55 -1.92 -15.22 16 19 C 0.07 0.94 10.10 127.77 1.29 2.23 16 20 C 0.12 2.81 4.83 38.15 0.18 2.99 16 21 C -0.13 -2.53 9.85 22.39 0.22 -2.31 16 22 C -0.11 -1.74 10.04 22.25 0.22 -1.52 16 23 C -0.12 -1.89 10.04 22.29 0.22 -1.67 16 24 C -0.12 -2.23 10.04 22.25 0.22 -2.01 16 25 C -0.13 -3.17 9.31 22.39 0.21 -2.96 16 26 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 27 H 0.02 1.02 6.20 -2.39 -0.01 1.00 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.06 2.63 6.10 -2.39 -0.01 2.62 16 32 H 0.09 2.48 6.47 -2.39 -0.02 2.47 16 33 H 0.06 2.58 5.79 -2.39 -0.01 2.57 16 34 H 0.01 0.28 8.08 -2.39 -0.02 0.26 16 35 H 0.12 2.62 5.65 -2.39 -0.01 2.61 16 36 H 0.12 2.93 8.14 -2.39 -0.02 2.92 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.92 8.05 -2.39 -0.02 0.90 16 39 H 0.09 1.01 6.48 -2.39 -0.02 0.99 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -73.67 353.04 3.36 -70.31 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.98 Total: 12.79 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 6.24 Total: -8.37 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -5.84 Total: -97.40 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.67 3.36 -70.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135148498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.928 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds