Wall clock time and date at job start Tue Mar 31 2020 08:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46740 * 2 1 4 4 C 1.50700 * 109.47245 * 239.99746 * 2 1 3 5 5 H 1.08000 * 119.99772 * 245.42082 * 4 2 1 6 6 C 1.37878 * 119.99839 * 65.42661 * 4 2 1 7 7 N 1.31513 * 119.99576 * 184.96084 * 6 4 2 8 8 Si 1.86797 * 120.00293 * 5.23089 * 6 4 2 9 9 H 1.48495 * 109.47071 * 269.72837 * 8 6 4 10 10 H 1.48505 * 109.46730 * 29.73119 * 8 6 4 11 11 H 1.48499 * 109.47000 * 149.72845 * 8 6 4 12 12 N 1.46896 * 109.47001 * 119.99381 * 2 1 3 13 13 C 1.46898 * 111.00315 * 58.95896 * 12 2 1 14 14 C 1.46899 * 111.00489 * 295.00210 * 12 2 1 15 15 C 1.52997 * 109.47340 * 189.99836 * 14 12 2 16 16 C 1.50701 * 109.47075 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00028 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00097 * 180.02562 * 16 15 14 19 19 C 1.46500 * 120.00170 * 5.12597 * 18 16 15 20 20 C 1.39929 * 119.99914 * 185.11726 * 18 16 15 21 21 C 1.38863 * 120.07244 * 245.07097 * 20 18 16 22 22 C 1.38115 * 119.92638 * 179.79368 * 21 20 18 23 23 C 1.38276 * 120.07366 * 0.48564 * 22 21 20 24 24 C 1.38288 * 120.13942 * 359.74935 * 23 22 21 25 25 C 1.38107 * 120.06829 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47091 * 54.87685 * 1 2 3 27 27 H 1.09001 * 109.46545 * 174.87417 * 1 2 3 28 28 H 1.08999 * 109.47251 * 294.87398 * 1 2 3 29 29 H 0.97006 * 119.99877 * 355.26640 * 7 6 4 30 30 H 1.09008 * 109.47009 * 59.99488 * 13 12 2 31 31 H 1.08995 * 109.47596 * 179.97438 * 13 12 2 32 32 H 1.09011 * 109.46752 * 300.00112 * 13 12 2 33 33 H 1.09000 * 109.46823 * 310.00314 * 14 12 2 34 34 H 1.08997 * 109.47050 * 69.99882 * 14 12 2 35 35 H 1.08993 * 109.47166 * 299.99952 * 15 14 12 36 36 H 1.09004 * 109.47211 * 60.00701 * 15 14 12 37 37 H 1.08991 * 109.47142 * 89.99517 * 19 18 16 38 38 H 1.08993 * 109.46803 * 210.00087 * 19 18 16 39 39 H 1.09001 * 109.46680 * 329.99523 * 19 18 16 40 40 H 1.08004 * 120.03870 * 0.03194 * 21 20 18 41 41 H 1.08009 * 119.96243 * 180.22996 * 22 21 20 42 42 H 1.08001 * 119.93603 * 179.72199 * 23 22 21 43 43 H 1.07996 * 119.96319 * 179.97438 * 24 23 22 44 44 H 1.08007 * 120.03345 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5792 -1.6368 -1.1336 6 6 1.7940 -0.1778 -2.4796 7 7 2.1459 -0.8450 -3.5569 8 14 0.9781 1.4947 -2.6417 9 1 -0.4950 1.3220 -2.7138 10 1 1.3216 2.3294 -1.4624 11 1 1.4593 2.1625 -3.8778 12 7 2.0196 -0.6923 1.1995 13 6 1.5284 -2.0760 1.2462 14 6 1.6487 0.0393 2.4181 15 6 2.3788 -0.5660 3.6186 16 6 1.9987 0.1850 4.8686 17 8 1.2207 1.1134 4.8054 18 7 2.5240 -0.1742 6.0567 19 6 3.5483 -1.2197 6.1186 20 6 2.0911 0.4515 7.2310 21 6 2.9717 1.2308 7.9696 22 6 2.5401 1.8505 9.1259 23 6 1.2353 1.6876 9.5538 24 6 0.3572 0.9083 8.8232 25 6 0.7813 0.2897 7.6635 26 1 -0.3633 0.5912 -0.8405 27 1 -0.3632 -1.0236 -0.0918 28 1 -0.3634 0.4323 0.9323 29 1 2.6343 -1.6789 -3.4730 30 1 1.8764 -2.6150 0.3649 31 1 1.9061 -2.5656 2.1437 32 1 0.4385 -2.0741 1.2641 33 1 1.9297 1.0872 2.3124 34 1 0.5722 -0.0343 2.5726 35 1 2.0978 -1.6138 3.7243 36 1 3.4553 -0.4922 3.4642 37 1 4.5354 -0.7673 6.0250 38 1 3.4769 -1.7421 7.0726 39 1 3.3944 -1.9278 5.3043 40 1 3.9921 1.3552 7.6381 41 1 3.2236 2.4598 9.6989 42 1 0.9014 2.1696 10.4608 43 1 -0.6611 0.7826 9.1602 44 1 0.0951 -0.3192 7.0935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135148520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:19 Heat of formation + Delta-G solvation = 7.625001 kcal Electronic energy + Delta-G solvation = -22970.636016 eV Core-core repulsion = 19695.529362 eV Total energy + Delta-G solvation = -3275.106654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68196 -38.76352 -37.39323 -35.66128 -33.11032 -31.54747 -31.19557 -30.16576 -28.72339 -26.95909 -25.84308 -24.90016 -23.36073 -22.78735 -21.53106 -19.44469 -19.05202 -17.63586 -17.29935 -16.94804 -16.29217 -16.22739 -15.13409 -14.99952 -14.53726 -14.12854 -14.02933 -13.67670 -13.54057 -13.32033 -13.23128 -12.90527 -12.81862 -12.70403 -12.20180 -11.84293 -11.66928 -11.61102 -11.46306 -11.42944 -11.19475 -10.75588 -10.59495 -10.24296 -9.91862 -9.83235 -9.65601 -9.54305 -9.19834 -8.68238 -8.59763 -8.36372 -7.34919 -6.39132 -4.02422 1.01132 1.13981 2.54779 2.71857 3.40458 3.47740 3.49699 3.62030 4.46678 4.51618 4.67391 4.70063 4.78661 4.85250 4.99178 5.07970 5.15355 5.22995 5.27604 5.34380 5.36084 5.38943 5.46483 5.73850 5.76177 5.98775 6.06225 6.11125 6.20715 6.24435 6.25930 6.32337 6.35544 6.38916 6.45306 6.64236 6.70434 6.82255 6.94489 7.08809 7.27623 7.72241 8.03220 8.07782 8.31252 8.47486 8.99042 9.66330 11.01761 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.003076 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.887430 B = 9100.986253 C = 9449.370696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.181 3.819 3 H 0.040 0.960 4 C -0.577 4.577 5 H 0.064 0.936 6 C 0.026 3.974 7 N -0.916 5.916 8 Si 1.054 2.946 9 H -0.286 1.286 10 H -0.279 1.279 11 H -0.290 1.290 12 N -0.527 5.527 13 C 0.032 3.968 14 C 0.065 3.935 15 C -0.132 4.132 16 C 0.518 3.482 17 O -0.522 6.522 18 N -0.585 5.585 19 C 0.079 3.921 20 C 0.147 3.853 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.109 4.109 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 0.159 26.519 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.615 4.615 5 H 0.082 0.918 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.885 3.115 9 H -0.213 1.213 10 H -0.205 1.205 11 H -0.217 1.217 12 N -0.250 5.250 13 C -0.117 4.117 14 C -0.064 4.064 15 C -0.172 4.172 16 C 0.307 3.693 17 O -0.396 6.396 18 N -0.316 5.316 19 C -0.063 4.063 20 C 0.057 3.943 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.634 1.714 25.276 25.341 hybrid contribution -0.269 -1.197 1.189 1.709 sum 0.365 0.516 26.464 26.472 Atomic orbital electron populations 1.22764 1.01627 1.01013 0.98922 1.19833 0.88967 0.95373 0.88529 0.94261 1.22047 1.38880 1.10255 0.90359 0.91755 1.25681 0.96721 1.03402 0.91989 1.70820 1.37241 1.16908 1.30197 0.83864 0.76151 0.75932 0.75596 1.21303 1.20549 1.21691 1.62235 1.59308 1.01980 1.01486 1.22298 0.97159 0.91077 1.01134 1.21809 0.97025 0.98432 0.89112 1.21732 1.03724 1.00272 0.91505 1.21148 0.79956 0.83871 0.84288 1.90726 1.34405 1.28529 1.85896 1.45560 1.42004 1.39153 1.04875 1.21909 0.90634 0.90103 1.03666 1.17612 0.93380 0.95738 0.87613 1.21223 1.00113 0.96807 0.96112 1.21022 0.96200 0.99438 0.96270 1.21180 0.93780 0.99215 1.00134 1.21045 0.99754 0.97217 0.94752 1.21243 0.95325 1.00058 0.96280 0.93487 0.92919 0.95249 0.92364 0.90569 0.93811 0.96327 0.90772 0.94697 0.88788 0.87964 0.92022 0.90916 0.89861 0.85810 0.85684 0.85880 0.85683 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 8.04 37.16 0.30 -3.87 16 2 C 0.18 4.38 1.92 -68.87 -0.13 4.25 16 3 H 0.04 1.00 6.53 -51.93 -0.34 0.66 16 4 C -0.58 -16.13 8.41 -34.44 -0.29 -16.42 16 5 H 0.06 1.92 6.78 -52.49 -0.36 1.57 16 6 C 0.03 0.75 5.43 -17.82 -0.10 0.66 16 7 N -0.92 -28.33 13.70 55.43 0.76 -27.57 16 8 Si 1.05 26.09 25.29 -169.99 -4.30 21.79 16 9 H -0.29 -6.77 6.82 56.52 0.39 -6.39 16 10 H -0.28 -6.53 6.35 56.52 0.36 -6.17 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 N -0.53 -10.98 4.74 -236.29 -1.12 -12.10 16 13 C 0.03 0.60 8.70 60.06 0.52 1.12 16 14 C 0.07 1.18 3.69 -3.83 -0.01 1.17 16 15 C -0.13 -1.83 4.09 -27.88 -0.11 -1.94 16 16 C 0.52 7.55 7.51 -10.98 -0.08 7.46 16 17 O -0.52 -9.66 15.67 5.55 0.09 -9.58 16 18 N -0.58 -6.77 2.93 -120.83 -0.35 -7.13 16 19 C 0.08 0.60 10.13 59.85 0.61 1.21 16 20 C 0.15 1.74 4.80 -83.69 -0.40 1.33 16 21 C -0.12 -1.25 9.81 -39.40 -0.39 -1.64 16 22 C -0.11 -0.96 10.04 -39.61 -0.40 -1.36 16 23 C -0.12 -1.06 10.04 -39.55 -0.40 -1.46 16 24 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 25 C -0.11 -1.26 9.42 -39.39 -0.37 -1.63 16 26 H 0.05 1.08 4.42 -51.93 -0.23 0.85 16 27 H 0.05 1.18 6.68 -51.93 -0.35 0.83 16 28 H 0.03 0.60 6.51 -51.93 -0.34 0.26 16 29 H 0.27 8.18 8.72 -40.82 -0.36 7.82 16 30 H 0.08 1.60 6.43 -51.92 -0.33 1.27 16 31 H 0.04 0.67 6.30 -51.93 -0.33 0.34 16 32 H 0.02 0.35 6.40 -51.92 -0.33 0.01 16 33 H 0.07 1.44 7.96 -51.93 -0.41 1.03 16 34 H 0.03 0.66 6.78 -51.93 -0.35 0.31 16 35 H 0.09 1.13 5.92 -51.93 -0.31 0.83 16 36 H 0.10 1.30 8.04 -51.93 -0.42 0.89 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.45 8.05 -51.93 -0.42 0.04 16 39 H 0.08 0.56 6.45 -51.93 -0.33 0.23 16 40 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -33.56 345.07 -7.97 -41.54 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.59 Total: 0.41 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.65 Total: -12.55 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.72 Total: -46.80 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.30 Total: 21.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.56 -7.97 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135148520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.164 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds