Wall clock time and date at job start Tue Mar 31 2020 08:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46740 * 2 1 4 4 C 1.50700 * 109.47245 * 239.99746 * 2 1 3 5 5 H 1.08000 * 119.99772 * 245.42082 * 4 2 1 6 6 C 1.37878 * 119.99839 * 65.42661 * 4 2 1 7 7 N 1.31513 * 119.99576 * 184.96084 * 6 4 2 8 8 Si 1.86797 * 120.00293 * 5.23089 * 6 4 2 9 9 H 1.48495 * 109.47071 * 269.72837 * 8 6 4 10 10 H 1.48505 * 109.46730 * 29.73119 * 8 6 4 11 11 H 1.48499 * 109.47000 * 149.72845 * 8 6 4 12 12 N 1.46896 * 109.47001 * 119.99381 * 2 1 3 13 13 C 1.46898 * 111.00315 * 58.95896 * 12 2 1 14 14 C 1.46899 * 111.00489 * 295.00210 * 12 2 1 15 15 C 1.52997 * 109.47340 * 189.99836 * 14 12 2 16 16 C 1.50701 * 109.47075 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00028 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00097 * 180.02562 * 16 15 14 19 19 C 1.46500 * 120.00170 * 5.12597 * 18 16 15 20 20 C 1.39929 * 119.99914 * 185.11726 * 18 16 15 21 21 C 1.38863 * 120.07244 * 245.07097 * 20 18 16 22 22 C 1.38115 * 119.92638 * 179.79368 * 21 20 18 23 23 C 1.38276 * 120.07366 * 0.48564 * 22 21 20 24 24 C 1.38288 * 120.13942 * 359.74935 * 23 22 21 25 25 C 1.38107 * 120.06829 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47091 * 54.87685 * 1 2 3 27 27 H 1.09001 * 109.46545 * 174.87417 * 1 2 3 28 28 H 1.08999 * 109.47251 * 294.87398 * 1 2 3 29 29 H 0.97006 * 119.99877 * 355.26640 * 7 6 4 30 30 H 1.09008 * 109.47009 * 59.99488 * 13 12 2 31 31 H 1.08995 * 109.47596 * 179.97438 * 13 12 2 32 32 H 1.09011 * 109.46752 * 300.00112 * 13 12 2 33 33 H 1.09000 * 109.46823 * 310.00314 * 14 12 2 34 34 H 1.08997 * 109.47050 * 69.99882 * 14 12 2 35 35 H 1.08993 * 109.47166 * 299.99952 * 15 14 12 36 36 H 1.09004 * 109.47211 * 60.00701 * 15 14 12 37 37 H 1.08991 * 109.47142 * 89.99517 * 19 18 16 38 38 H 1.08993 * 109.46803 * 210.00087 * 19 18 16 39 39 H 1.09001 * 109.46680 * 329.99523 * 19 18 16 40 40 H 1.08004 * 120.03870 * 0.03194 * 21 20 18 41 41 H 1.08009 * 119.96243 * 180.22996 * 22 21 20 42 42 H 1.08001 * 119.93603 * 179.72199 * 23 22 21 43 43 H 1.07996 * 119.96319 * 179.97438 * 24 23 22 44 44 H 1.08007 * 120.03345 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5792 -1.6368 -1.1336 6 6 1.7940 -0.1778 -2.4796 7 7 2.1459 -0.8450 -3.5569 8 14 0.9781 1.4947 -2.6417 9 1 -0.4950 1.3220 -2.7138 10 1 1.3216 2.3294 -1.4624 11 1 1.4593 2.1625 -3.8778 12 7 2.0196 -0.6923 1.1995 13 6 1.5284 -2.0760 1.2462 14 6 1.6487 0.0393 2.4181 15 6 2.3788 -0.5660 3.6186 16 6 1.9987 0.1850 4.8686 17 8 1.2207 1.1134 4.8054 18 7 2.5240 -0.1742 6.0567 19 6 3.5483 -1.2197 6.1186 20 6 2.0911 0.4515 7.2310 21 6 2.9717 1.2308 7.9696 22 6 2.5401 1.8505 9.1259 23 6 1.2353 1.6876 9.5538 24 6 0.3572 0.9083 8.8232 25 6 0.7813 0.2897 7.6635 26 1 -0.3633 0.5912 -0.8405 27 1 -0.3632 -1.0236 -0.0918 28 1 -0.3634 0.4323 0.9323 29 1 2.6343 -1.6789 -3.4730 30 1 1.8764 -2.6150 0.3649 31 1 1.9061 -2.5656 2.1437 32 1 0.4385 -2.0741 1.2641 33 1 1.9297 1.0872 2.3124 34 1 0.5722 -0.0343 2.5726 35 1 2.0978 -1.6138 3.7243 36 1 3.4553 -0.4922 3.4642 37 1 4.5354 -0.7673 6.0250 38 1 3.4769 -1.7421 7.0726 39 1 3.3944 -1.9278 5.3043 40 1 3.9921 1.3552 7.6381 41 1 3.2236 2.4598 9.6989 42 1 0.9014 2.1696 10.4608 43 1 -0.6611 0.7826 9.1602 44 1 0.0951 -0.3192 7.0935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135148520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:17 Heat of formation + Delta-G solvation = -14.724008 kcal Electronic energy + Delta-G solvation = -22971.605142 eV Core-core repulsion = 19695.529362 eV Total energy + Delta-G solvation = -3276.075779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63293 -39.74959 -38.95329 -36.59616 -35.06521 -33.09113 -31.90890 -31.28928 -30.17062 -27.76734 -27.24841 -26.91026 -24.59190 -23.53486 -22.77562 -20.94798 -20.34280 -19.41963 -18.55248 -18.00224 -17.22497 -17.09883 -16.65967 -16.12731 -15.80333 -15.48623 -15.33954 -15.01943 -14.70996 -14.52011 -14.36582 -14.06848 -13.80982 -13.60740 -13.49473 -13.46577 -13.30592 -13.08102 -12.74525 -12.52957 -12.39047 -12.35959 -12.16464 -11.89012 -11.63529 -11.57276 -11.02269 -10.83901 -10.56112 -10.36587 -9.92322 -9.40473 -9.02998 -8.69368 -6.33195 0.26397 0.41575 1.41807 1.47790 1.51444 1.67953 1.83560 2.46403 2.77625 3.09752 3.19680 3.69904 3.95227 3.97148 4.02467 4.08207 4.21696 4.23518 4.41133 4.44784 4.49404 4.50203 4.52220 4.62218 4.64661 4.67855 4.68911 4.80364 4.87671 4.91301 4.91878 5.05309 5.06104 5.20442 5.37820 5.43051 5.45622 5.54923 5.61568 5.78018 6.05770 6.07453 6.17100 6.25738 6.52805 6.72058 7.05364 7.43954 8.70611 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.003076 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.887430 B = 9100.986253 C = 9449.370696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.180 3.820 3 H 0.030 0.970 4 C -0.571 4.571 5 H 0.034 0.966 6 C -0.024 4.024 7 N -0.949 5.949 8 Si 1.088 2.912 9 H -0.267 1.267 10 H -0.259 1.259 11 H -0.291 1.291 12 N -0.536 5.536 13 C 0.035 3.965 14 C 0.071 3.929 15 C -0.120 4.120 16 C 0.517 3.483 17 O -0.571 6.571 18 N -0.576 5.576 19 C 0.071 3.929 20 C 0.120 3.880 21 C -0.132 4.132 22 C -0.111 4.111 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.132 4.132 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 0.837 29.475 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.071 3.929 3 H 0.048 0.952 4 C -0.609 4.609 5 H 0.052 0.948 6 C -0.222 4.222 7 N -0.586 5.586 8 Si 0.912 3.088 9 H -0.193 1.193 10 H -0.183 1.183 11 H -0.218 1.218 12 N -0.260 5.260 13 C -0.113 4.113 14 C -0.058 4.058 15 C -0.160 4.160 16 C 0.307 3.693 17 O -0.450 6.450 18 N -0.306 5.306 19 C -0.070 4.070 20 C 0.030 3.970 21 C -0.152 4.152 22 C -0.129 4.129 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.152 4.152 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.161 0.839 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.678 2.345 28.290 28.395 hybrid contribution -0.206 -1.479 0.422 1.551 sum 0.472 0.867 28.712 28.729 Atomic orbital electron populations 1.22622 1.00094 1.01016 0.99895 1.19651 0.90028 0.94566 0.88648 0.95192 1.22221 1.37486 1.09046 0.92169 0.94823 1.26962 0.97136 1.06107 0.91949 1.70938 1.39288 1.17104 1.31288 0.83448 0.76516 0.72541 0.76307 1.19301 1.18348 1.21751 1.62126 1.59625 1.02807 1.01403 1.22285 0.97236 0.89932 1.01820 1.21731 0.97112 0.97601 0.89326 1.21597 1.03981 1.00949 0.89431 1.21188 0.79523 0.83306 0.85252 1.90702 1.36835 1.30723 1.86698 1.45564 1.41767 1.39214 1.04025 1.22202 0.90159 0.89551 1.05085 1.17877 0.94019 0.97106 0.88025 1.21422 1.00428 0.96733 0.96598 1.21407 0.96843 0.98904 0.95784 1.21566 0.93521 0.98363 1.00735 1.21335 1.00969 0.96918 0.94181 1.21332 0.95331 1.01137 0.97401 0.93817 0.93190 0.93153 0.93847 0.93470 0.89611 0.96266 0.92447 0.95483 0.86450 0.86423 0.90586 0.89411 0.88683 0.84823 0.82988 0.83044 0.83922 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.80 8.04 71.98 0.58 -7.22 16 2 C 0.18 8.63 1.92 44.17 0.08 8.72 16 3 H 0.03 1.51 6.53 -2.39 -0.02 1.49 16 4 C -0.57 -32.45 8.41 25.60 0.22 -32.24 16 5 H 0.03 2.08 6.78 -2.91 -0.02 2.06 16 6 C -0.02 -1.44 5.43 84.66 0.46 -0.98 16 7 N -0.95 -60.16 13.70 21.45 0.29 -59.86 16 8 Si 1.09 52.17 25.29 68.60 1.73 53.90 16 9 H -0.27 -11.96 6.82 99.48 0.68 -11.28 16 10 H -0.26 -11.45 6.35 99.48 0.63 -10.82 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 N -0.54 -21.86 4.74 -901.47 -4.27 -26.13 16 13 C 0.04 1.29 8.70 127.69 1.11 2.40 16 14 C 0.07 2.49 3.69 86.30 0.32 2.80 16 15 C -0.12 -3.06 4.09 29.85 0.12 -2.94 16 16 C 0.52 14.49 7.51 87.66 0.66 15.15 16 17 O -0.57 -21.16 15.67 -3.05 -0.05 -21.21 16 18 N -0.58 -12.46 2.93 -654.58 -1.92 -14.39 16 19 C 0.07 0.89 10.13 127.77 1.29 2.18 16 20 C 0.12 2.70 4.80 38.15 0.18 2.88 16 21 C -0.13 -2.45 9.81 22.39 0.22 -2.23 16 22 C -0.11 -1.63 10.04 22.25 0.22 -1.41 16 23 C -0.12 -1.77 10.04 22.29 0.22 -1.55 16 24 C -0.12 -2.02 10.04 22.25 0.22 -1.79 16 25 C -0.13 -2.98 9.42 22.39 0.21 -2.76 16 26 H 0.04 1.93 4.42 -2.39 -0.01 1.92 16 27 H 0.05 2.19 6.68 -2.39 -0.02 2.17 16 28 H 0.05 1.98 6.51 -2.39 -0.02 1.97 16 29 H 0.25 16.16 8.72 -92.70 -0.81 15.35 16 30 H 0.05 1.99 6.43 -2.38 -0.02 1.98 16 31 H 0.09 2.38 6.30 -2.39 -0.02 2.36 16 32 H 0.02 0.69 6.40 -2.38 -0.02 0.68 16 33 H 0.06 2.20 7.96 -2.39 -0.02 2.18 16 34 H 0.03 0.99 6.78 -2.39 -0.02 0.98 16 35 H 0.12 2.43 5.92 -2.39 -0.01 2.42 16 36 H 0.12 2.68 8.04 -2.39 -0.02 2.66 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.87 8.05 -2.39 -0.02 0.85 16 39 H 0.09 0.97 6.45 -2.39 -0.02 0.96 16 40 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.11 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -74.93 345.07 2.76 -72.17 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.85 Total: 14.48 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 6.13 Total: -18.98 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -5.90 Total: -100.38 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 1.73 Total: 53.90 kcal Total: -74.93 2.76 -72.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135148520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.450 kcal (2) G-P(sol) polarization free energy of solvation -74.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds