Wall clock time and date at job start Tue Mar 31 2020 08:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00302 * 2 1 3 5 5 H 1.08000 * 119.99681 * 120.00059 * 4 2 1 6 6 C 1.37878 * 120.00074 * 299.99776 * 4 2 1 7 7 N 1.31509 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47152 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00302 * 8 6 4 11 11 H 1.48505 * 109.47071 * 59.99970 * 8 6 4 12 12 N 1.46497 * 109.46959 * 240.00562 * 2 1 3 13 13 C 1.34778 * 120.00145 * 85.00123 * 12 2 1 14 14 O 1.21582 * 120.00043 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99798 * 179.97438 * 13 12 2 16 16 C 1.39941 * 119.99698 * 175.37648 * 15 13 12 17 17 C 1.38871 * 120.07215 * 214.81111 * 16 15 13 18 18 C 1.38114 * 119.93178 * 179.77118 * 17 16 15 19 19 C 1.38283 * 120.07106 * 0.50553 * 18 17 16 20 20 C 1.50692 * 119.92958 * 179.72082 * 19 18 17 21 21 C 1.53001 * 109.47272 * 240.02518 * 20 19 18 22 22 C 1.52998 * 109.47658 * 0.03081 * 20 19 18 23 23 C 1.53008 * 109.46888 * 120.02559 * 20 19 18 24 24 C 1.38285 * 120.13764 * 359.75208 * 19 18 17 25 25 C 1.38116 * 120.07111 * 359.97438 * 24 19 18 26 26 H 1.08996 * 109.47011 * 299.99836 * 1 2 3 27 27 H 1.09004 * 109.47070 * 59.99335 * 1 2 3 28 28 H 1.08997 * 109.47428 * 179.97438 * 1 2 3 29 29 H 0.96997 * 120.00226 * 179.97438 * 7 6 4 30 30 H 0.96998 * 120.00320 * 264.99560 * 12 2 1 31 31 H 0.96992 * 120.00370 * 355.37762 * 15 13 12 32 32 H 1.07997 * 120.03049 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.96656 * 180.26150 * 18 17 16 34 34 H 1.08997 * 109.47280 * 60.00255 * 21 20 19 35 35 H 1.08998 * 109.47004 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.46924 * 299.99972 * 21 20 19 37 37 H 1.08999 * 109.47141 * 59.99463 * 22 20 19 38 38 H 1.08988 * 109.47495 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.46743 * 299.99937 * 22 20 19 40 40 H 1.09002 * 109.46911 * 60.00053 * 23 20 19 41 41 H 1.08993 * 109.47286 * 179.97438 * 23 20 19 42 42 H 1.08999 * 109.47217 * 300.00113 * 23 20 19 43 43 H 1.07996 * 119.96587 * 179.97438 * 24 19 18 44 44 H 1.07993 * 120.03669 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 1.8270 -0.4202 5.2204 10 1 1.8281 -2.5200 4.0080 11 1 3.8076 -1.1192 4.0076 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3572 14 8 1.8574 1.1615 -2.4118 15 7 2.5967 -0.6532 -3.4575 16 6 2.6390 0.0180 -4.6847 17 6 2.3853 -0.6706 -5.8637 18 6 2.4231 -0.0043 -7.0728 19 6 2.7235 1.3450 -7.1113 20 6 2.7700 2.0676 -8.4329 21 6 4.1682 2.6512 -8.6461 22 6 2.4492 1.0865 -9.5622 23 6 1.7398 3.1988 -8.4322 24 6 2.9818 2.0325 -5.9396 25 6 2.9400 1.3731 -4.7267 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1607 3.4844 30 1 2.2490 -1.6316 -1.1528 31 1 2.8911 -1.5756 -3.3989 32 1 2.1547 -1.7253 -5.8346 33 1 2.2218 -0.5384 -7.9897 34 1 4.9021 1.8454 -8.6466 35 1 4.2017 3.1742 -9.6018 36 1 4.3966 3.3502 -7.8416 37 1 1.4532 0.6707 -9.4103 38 1 2.4824 1.6092 -10.5180 39 1 3.1831 0.2805 -9.5627 40 1 1.9683 3.8978 -7.6276 41 1 1.7737 3.7217 -9.3879 42 1 0.7437 2.7830 -8.2803 43 1 3.2164 3.0861 -5.9728 44 1 3.1422 1.9104 -3.8120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153248156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:56 Heat of formation + Delta-G solvation = -20.274718 kcal Electronic energy + Delta-G solvation = -22746.576734 eV Core-core repulsion = 19470.260258 eV Total energy + Delta-G solvation = -3276.316476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30850 -39.07357 -36.61499 -34.82831 -33.76665 -32.34777 -30.96089 -29.37023 -27.85621 -27.47041 -27.36346 -25.25758 -23.12173 -22.36816 -21.19555 -19.80616 -19.24332 -18.14258 -17.52979 -16.07230 -15.71901 -15.18009 -14.96276 -14.58312 -14.37770 -14.14804 -14.08539 -13.68984 -13.39936 -13.12000 -12.79767 -12.64828 -12.37665 -12.21439 -12.05189 -11.83143 -11.72284 -11.46727 -11.12847 -11.09567 -10.97873 -10.78833 -10.75542 -10.55684 -10.33765 -10.23785 -9.85370 -9.34447 -9.06146 -8.70814 -8.57143 -8.05765 -7.62424 -6.13343 -4.22785 1.49731 1.61786 3.21914 3.24962 3.30407 3.33314 3.70834 4.08580 4.31577 4.54503 4.65998 4.87624 4.95576 5.12536 5.15917 5.19183 5.22744 5.40134 5.48013 5.54264 5.61264 5.69035 5.74072 5.78662 5.85283 5.87930 5.93746 6.12965 6.18080 6.21411 6.53219 6.56700 6.77611 6.81291 6.84527 6.98210 7.13040 7.25081 7.33564 7.46415 7.61248 7.83325 7.99988 8.14684 8.72221 8.84860 9.24497 9.45879 10.92694 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.002796 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.592202 B =10013.359563 C =10191.028313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.719 5.719 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.698 5.698 16 C 0.175 3.825 17 C -0.155 4.155 18 C -0.104 4.104 19 C -0.100 4.100 20 C -0.026 4.026 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.097 4.097 25 C -0.118 4.118 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.401 0.599 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.119 0.881 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -1.519 -21.442 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.460 6.460 15 N -0.345 5.345 16 C 0.079 3.921 17 C -0.176 4.176 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.026 4.026 21 C -0.195 4.195 22 C -0.200 4.200 23 C -0.196 4.196 24 C -0.115 4.115 25 C -0.139 4.139 26 H 0.109 0.891 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.236 0.764 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.827 -0.314 -21.177 21.522 hybrid contribution 0.456 -1.464 1.022 1.843 sum 4.283 -1.778 -20.155 20.682 Atomic orbital electron populations 1.22105 0.98552 0.99088 1.00943 1.18669 0.90848 0.93732 0.78833 0.93285 1.21171 1.32599 1.13301 0.90278 0.92135 1.24879 0.94807 0.94966 0.99027 1.69891 1.35702 1.22396 1.24039 0.86490 0.79152 0.79560 0.81770 1.21098 1.20171 1.20175 1.45869 1.68614 1.13294 1.09271 1.16172 0.78630 0.85511 0.80418 1.90865 1.57032 1.14107 1.83956 1.42845 1.68552 1.16301 1.06831 1.17582 0.97728 0.92476 0.84273 1.20840 1.04921 1.00176 0.91671 1.20836 1.00432 0.93947 0.97047 1.19673 1.02373 0.93845 0.94209 1.19425 0.95926 0.95101 0.92125 1.21885 0.95458 1.00723 1.01427 1.21948 1.01629 0.98977 0.97409 1.21897 0.98648 0.97492 1.01574 1.20844 0.99748 0.99512 0.91423 1.21409 0.99648 0.93865 0.98969 0.89086 0.96590 0.95532 0.92468 0.78199 0.76405 0.86181 0.85793 0.92572 0.92676 0.92388 0.92313 0.92664 0.92352 0.92340 0.92678 0.92483 0.86278 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.28 7.18 2.56 -69.09 -0.18 7.01 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 N -0.72 -15.06 5.07 -59.82 -0.30 -15.36 16 13 C 0.69 14.25 8.37 -86.91 -0.73 13.53 16 14 O -0.58 -14.19 13.44 5.29 0.07 -14.12 16 15 N -0.70 -11.03 5.34 -14.22 -0.08 -11.11 16 16 C 0.18 2.73 6.30 -83.69 -0.53 2.20 16 17 C -0.16 -1.97 9.97 -39.39 -0.39 -2.37 16 18 C -0.10 -1.20 8.97 -39.61 -0.36 -1.56 16 19 C -0.10 -1.18 4.76 -104.59 -0.50 -1.68 16 20 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 21 C -0.14 -1.16 8.29 37.16 0.31 -0.85 16 22 C -0.14 -1.11 7.13 37.16 0.26 -0.85 16 23 C -0.14 -1.26 8.29 37.16 0.31 -0.95 16 24 C -0.10 -1.31 8.70 -39.61 -0.34 -1.66 16 25 C -0.12 -1.94 8.70 -39.39 -0.34 -2.29 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.39 6.87 8.56 -40.82 -0.35 6.52 16 31 H 0.40 4.90 8.84 -40.82 -0.36 4.54 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.15 5.88 -52.49 -0.31 0.84 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 37 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 38 H 0.05 0.37 8.14 -51.94 -0.42 -0.05 16 39 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 40 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.12 1.44 7.09 -52.49 -0.37 1.07 16 44 H 0.14 2.70 6.22 -52.49 -0.33 2.37 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -30.79 353.32 -8.94 -39.73 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.90 Total: 10.22 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.67 Total: -5.98 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.25 Total: -50.72 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.79 -8.94 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153248156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.455 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds