Wall clock time and date at job start Tue Mar 31 2020 08:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47157 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00302 * 2 1 3 5 5 H 1.08000 * 119.99681 * 120.00059 * 4 2 1 6 6 C 1.37878 * 120.00074 * 299.99776 * 4 2 1 7 7 N 1.31509 * 120.00160 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47152 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47257 * 300.00302 * 8 6 4 11 11 H 1.48505 * 109.47071 * 59.99970 * 8 6 4 12 12 N 1.46497 * 109.46959 * 240.00562 * 2 1 3 13 13 C 1.34778 * 120.00145 * 85.00123 * 12 2 1 14 14 O 1.21582 * 120.00043 * 359.97438 * 13 12 2 15 15 N 1.34781 * 119.99798 * 179.97438 * 13 12 2 16 16 C 1.39941 * 119.99698 * 175.37648 * 15 13 12 17 17 C 1.38871 * 120.07215 * 214.81111 * 16 15 13 18 18 C 1.38114 * 119.93178 * 179.77118 * 17 16 15 19 19 C 1.38283 * 120.07106 * 0.50553 * 18 17 16 20 20 C 1.50692 * 119.92958 * 179.72082 * 19 18 17 21 21 C 1.53001 * 109.47272 * 240.02518 * 20 19 18 22 22 C 1.52998 * 109.47658 * 0.03081 * 20 19 18 23 23 C 1.53008 * 109.46888 * 120.02559 * 20 19 18 24 24 C 1.38285 * 120.13764 * 359.75208 * 19 18 17 25 25 C 1.38116 * 120.07111 * 359.97438 * 24 19 18 26 26 H 1.08996 * 109.47011 * 299.99836 * 1 2 3 27 27 H 1.09004 * 109.47070 * 59.99335 * 1 2 3 28 28 H 1.08997 * 109.47428 * 179.97438 * 1 2 3 29 29 H 0.96997 * 120.00226 * 179.97438 * 7 6 4 30 30 H 0.96998 * 120.00320 * 264.99560 * 12 2 1 31 31 H 0.96992 * 120.00370 * 355.37762 * 15 13 12 32 32 H 1.07997 * 120.03049 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.96656 * 180.26150 * 18 17 16 34 34 H 1.08997 * 109.47280 * 60.00255 * 21 20 19 35 35 H 1.08998 * 109.47004 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.46924 * 299.99972 * 21 20 19 37 37 H 1.08999 * 109.47141 * 59.99463 * 22 20 19 38 38 H 1.08988 * 109.47495 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.46743 * 299.99937 * 22 20 19 40 40 H 1.09002 * 109.46911 * 60.00053 * 23 20 19 41 41 H 1.08993 * 109.47286 * 179.97438 * 23 20 19 42 42 H 1.08999 * 109.47217 * 300.00113 * 23 20 19 43 43 H 1.07996 * 119.96587 * 179.97438 * 24 19 18 44 44 H 1.07993 * 120.03669 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 1.8270 -0.4202 5.2204 10 1 1.8281 -2.5200 4.0080 11 1 3.8076 -1.1192 4.0076 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3572 14 8 1.8574 1.1615 -2.4118 15 7 2.5967 -0.6532 -3.4575 16 6 2.6390 0.0180 -4.6847 17 6 2.3853 -0.6706 -5.8637 18 6 2.4231 -0.0043 -7.0728 19 6 2.7235 1.3450 -7.1113 20 6 2.7700 2.0676 -8.4329 21 6 4.1682 2.6512 -8.6461 22 6 2.4492 1.0865 -9.5622 23 6 1.7398 3.1988 -8.4322 24 6 2.9818 2.0325 -5.9396 25 6 2.9400 1.3731 -4.7267 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1607 3.4844 30 1 2.2490 -1.6316 -1.1528 31 1 2.8911 -1.5756 -3.3989 32 1 2.1547 -1.7253 -5.8346 33 1 2.2218 -0.5384 -7.9897 34 1 4.9021 1.8454 -8.6466 35 1 4.2017 3.1742 -9.6018 36 1 4.3966 3.3502 -7.8416 37 1 1.4532 0.6707 -9.4103 38 1 2.4824 1.6092 -10.5180 39 1 3.1831 0.2805 -9.5627 40 1 1.9683 3.8978 -7.6276 41 1 1.7737 3.7217 -9.3879 42 1 0.7437 2.7830 -8.2803 43 1 3.2164 3.0861 -5.9728 44 1 3.1422 1.9104 -3.8120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153248156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:53 Heat of formation + Delta-G solvation = -38.653296 kcal Electronic energy + Delta-G solvation = -22747.373689 eV Core-core repulsion = 19470.260258 eV Total energy + Delta-G solvation = -3277.113431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.63826 -40.31166 -37.78141 -36.60197 -35.15416 -34.23401 -32.00227 -31.07685 -29.19995 -28.15511 -28.05118 -27.34579 -24.44138 -23.43414 -22.78822 -21.54752 -20.15069 -19.76091 -18.82703 -17.87177 -17.06888 -16.58144 -16.43916 -15.97763 -15.63583 -15.37924 -15.07275 -14.95027 -14.57674 -14.40946 -14.19592 -13.92967 -13.62264 -13.54418 -13.05995 -13.00064 -12.85574 -12.73782 -12.67898 -12.49440 -12.41981 -12.27895 -12.15488 -11.83825 -11.66727 -11.39694 -11.21232 -11.12365 -10.88338 -10.60879 -9.84720 -9.79408 -8.85858 -8.18205 -6.36014 0.40466 0.53686 1.44903 1.47399 1.55099 1.79087 2.17592 2.41909 2.92202 3.12234 3.44746 3.75431 3.87794 4.14201 4.19146 4.21061 4.44863 4.52136 4.63393 4.69647 4.76398 4.83142 4.88525 4.91461 4.96359 5.05732 5.07712 5.08731 5.09836 5.17498 5.26896 5.34186 5.42030 5.49053 5.49466 5.53334 5.57698 5.65576 5.68508 5.80026 5.85765 6.07883 6.18217 6.27651 6.71562 7.23010 7.33049 7.67252 8.88237 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.002796 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.592202 B =10013.359563 C =10191.028313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.290 3.710 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.286 1.286 10 H -0.263 1.263 11 H -0.271 1.271 12 N -0.714 5.714 13 C 0.691 3.309 14 O -0.626 6.626 15 N -0.677 5.677 16 C 0.145 3.855 17 C -0.144 4.144 18 C -0.101 4.101 19 C -0.092 4.092 20 C -0.027 4.027 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.146 4.146 26 H 0.068 0.932 27 H 0.009 0.991 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.420 0.580 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.124 0.876 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 -3.804 -23.642 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.212 1.212 10 H -0.188 1.188 11 H -0.196 1.196 12 N -0.367 5.367 13 C 0.391 3.609 14 O -0.507 6.507 15 N -0.326 5.326 16 C 0.050 3.950 17 C -0.164 4.164 18 C -0.119 4.119 19 C -0.093 4.093 20 C -0.027 4.027 21 C -0.194 4.194 22 C -0.199 4.199 23 C -0.197 4.197 24 C -0.122 4.122 25 C -0.167 4.167 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.239 0.761 31 H 0.259 0.741 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.377 -2.659 -23.434 23.987 hybrid contribution 0.312 -0.673 1.550 1.718 sum 4.688 -3.331 -21.884 22.627 Atomic orbital electron populations 1.21923 0.98443 0.99453 0.99467 1.18240 0.90867 0.91636 0.80677 0.98393 1.21501 1.32784 1.13705 0.90632 0.90712 1.25816 0.94841 0.95586 1.02352 1.70048 1.36865 1.23919 1.24754 0.85358 0.78597 0.78706 0.77420 1.21177 1.18753 1.19602 1.45449 1.68897 1.13947 1.08392 1.16293 0.78416 0.84991 0.81182 1.90846 1.58789 1.16251 1.84789 1.42465 1.67531 1.16895 1.05722 1.17818 0.99904 0.92459 0.84801 1.21141 1.03193 1.01448 0.90638 1.21270 0.98899 0.93846 0.97857 1.20047 1.00269 0.94305 0.94702 1.19513 0.96509 0.95411 0.91222 1.21881 0.94798 1.00678 1.02061 1.21950 1.01889 0.98831 0.97183 1.21907 0.98135 0.97388 1.02252 1.20933 1.00043 0.99971 0.91302 1.21259 1.02025 0.94780 0.98615 0.91320 0.97233 0.94020 0.92474 0.76121 0.74148 0.83273 0.82518 0.92556 0.90939 0.93278 0.92122 0.91207 0.91606 0.93415 0.90789 0.93186 0.85764 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 2 C 0.29 15.30 2.56 44.24 0.11 15.42 16 3 H 0.00 -0.12 7.58 -2.38 -0.02 -0.13 16 4 C -0.55 -29.13 8.73 25.60 0.22 -28.91 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.77 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 8 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 9 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 N -0.71 -30.37 5.07 -461.42 -2.34 -32.71 16 13 C 0.69 29.36 8.37 179.05 1.50 30.86 16 14 O -0.63 -32.46 13.44 -3.97 -0.05 -32.52 16 15 N -0.68 -21.34 5.34 -317.17 -1.70 -23.04 16 16 C 0.15 4.49 6.30 38.15 0.24 4.73 16 17 C -0.14 -3.31 9.97 22.39 0.22 -3.09 16 18 C -0.10 -2.03 8.97 22.25 0.20 -1.83 16 19 C -0.09 -2.04 4.76 -19.84 -0.09 -2.13 16 20 C -0.03 -0.43 0.85 -52.93 -0.05 -0.47 16 21 C -0.14 -2.02 8.29 71.98 0.60 -1.42 16 22 C -0.14 -1.68 7.13 71.98 0.51 -1.16 16 23 C -0.14 -2.29 8.29 71.98 0.60 -1.70 16 24 C -0.10 -2.88 8.70 22.25 0.19 -2.69 16 25 C -0.15 -5.05 8.70 22.39 0.19 -4.85 16 26 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 27 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.40 14.08 8.56 -92.71 -0.79 13.29 16 31 H 0.42 9.68 8.84 -92.71 -0.82 8.86 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.16 2.17 5.88 -2.91 -0.02 2.16 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.80 7.38 -2.39 -0.02 0.79 16 37 H 0.06 0.71 7.51 -2.39 -0.02 0.69 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 0.70 7.51 -2.39 -0.02 0.68 16 40 H 0.05 0.87 7.38 -2.39 -0.02 0.86 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.12 3.17 7.09 -2.91 -0.02 3.15 16 44 H 0.10 4.35 6.22 -2.91 -0.02 4.33 16 Total: -1.00 -69.81 353.32 3.15 -66.67 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.60 Total: 32.71 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.57 Total: -2.32 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.79 Total: -108.54 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.05 Total: -32.52 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.81 3.15 -66.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153248156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.015 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds