Wall clock time and date at job start Tue Mar 31 2020 07:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47106 * 2 1 4 4 N 1.46894 * 109.47456 * 239.99459 * 2 1 3 5 5 C 1.46904 * 111.00054 * 113.99119 * 4 2 1 6 6 C 1.53004 * 109.47016 * 302.04093 * 5 4 2 7 7 C 1.52992 * 109.47271 * 182.03882 * 5 4 2 8 8 C 1.52998 * 109.46839 * 62.04049 * 5 4 2 9 9 N 1.46502 * 109.47634 * 55.53763 * 8 5 4 10 10 C 1.34774 * 120.00077 * 179.97438 * 9 8 5 11 11 O 1.21679 * 120.00012 * 0.02562 * 10 9 8 12 12 C 1.46380 * 119.99591 * 180.02562 * 10 9 8 13 13 H 1.07995 * 120.00076 * 6.61075 * 12 10 9 14 14 C 1.40050 * 119.99747 * 186.61114 * 12 10 9 15 15 N 1.30669 * 119.99718 * 6.67570 * 14 12 10 16 16 Si 1.86797 * 119.99754 * 186.67151 * 14 12 10 17 17 H 1.48503 * 109.47211 * 94.99076 * 16 14 12 18 18 H 1.48502 * 109.46870 * 214.99029 * 16 14 12 19 19 H 1.48496 * 109.47133 * 334.98841 * 16 14 12 20 20 C 1.50699 * 109.47013 * 119.99242 * 2 1 3 21 21 C 1.38239 * 119.99701 * 79.72944 * 20 2 1 22 22 C 1.38237 * 119.99894 * 179.80737 * 21 20 2 23 23 C 1.38239 * 120.00184 * 0.40275 * 22 21 20 24 24 C 1.38236 * 119.99778 * 359.85135 * 23 22 21 25 25 C 1.38233 * 120.00576 * 260.00599 * 20 2 1 26 26 H 1.08997 * 109.47476 * 300.65818 * 1 2 3 27 27 H 1.09005 * 109.46878 * 60.66143 * 1 2 3 28 28 H 1.09004 * 109.47331 * 180.65821 * 1 2 3 29 29 H 1.00903 * 111.00041 * 350.03856 * 4 2 1 30 30 H 1.09000 * 109.46788 * 306.88917 * 6 5 4 31 31 H 1.08999 * 109.46717 * 186.88402 * 6 5 4 32 32 H 1.09004 * 109.47050 * 66.88485 * 6 5 4 33 33 H 1.08999 * 109.47161 * 185.42534 * 7 5 4 34 34 H 1.09005 * 109.47579 * 305.42909 * 7 5 4 35 35 H 1.09005 * 109.47115 * 65.43035 * 7 5 4 36 36 H 1.09003 * 109.46963 * 175.53728 * 8 5 4 37 37 H 1.09006 * 109.47569 * 295.53582 * 8 5 4 38 38 H 0.96998 * 119.99243 * 359.97438 * 9 8 5 39 39 H 0.97004 * 119.99658 * 180.02562 * 15 14 12 40 40 H 1.07994 * 120.00393 * 0.02562 * 21 20 2 41 41 H 1.08002 * 120.00133 * 180.22526 * 22 21 20 42 42 H 1.07993 * 120.00558 * 179.83144 * 23 22 21 43 43 H 1.08002 * 119.99955 * 179.97438 * 24 23 22 44 44 H 1.08008 * 119.99818 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.7209 0.2372 -2.0947 6 6 1.7781 1.3768 -2.4865 7 6 3.1708 -0.5079 -3.3529 8 6 3.9442 0.8113 -1.3772 9 7 4.7948 -0.2855 -0.9082 10 6 5.9364 -0.0164 -0.2444 11 8 6.2606 1.1374 -0.0343 12 6 6.7865 -1.1124 0.2237 13 1 6.5565 -2.1304 -0.0537 14 6 7.8979 -0.8406 1.0313 15 7 8.1027 0.3714 1.4745 16 14 9.0874 -2.2109 1.4748 17 1 10.2250 -2.2072 0.5202 18 1 9.5972 -1.9969 2.8531 19 1 8.3858 -3.5177 1.4039 20 6 2.0323 -0.7102 1.2306 21 6 2.0614 -2.0918 1.2676 22 6 2.5259 -2.7433 2.3949 23 6 2.9535 -2.0134 3.4882 24 6 2.9194 -0.6319 3.4531 25 6 2.4586 0.0196 2.3244 26 1 -0.3634 0.5240 0.8840 27 1 -0.3633 0.5036 -0.8959 28 1 -0.3634 -1.0276 0.0118 29 1 1.2655 -1.1589 -1.6809 30 1 0.8530 0.9616 -2.8866 31 1 2.2549 1.9986 -3.2442 32 1 1.5546 1.9819 -1.6078 33 1 3.7735 0.1561 -3.9725 34 1 3.7640 -1.3769 -3.0680 35 1 2.2954 -0.8339 -3.9147 36 1 4.5085 1.4392 -2.0668 37 1 3.6188 1.4085 -0.5253 38 1 4.5361 -1.2053 -1.0754 39 1 8.8727 0.5597 2.0336 40 1 1.7246 -2.6622 0.4147 41 1 2.5520 -3.8227 2.4225 42 1 3.3138 -2.5224 4.3699 43 1 3.2531 -0.0616 4.3075 44 1 2.4320 1.0990 2.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153754177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:53 Heat of formation + Delta-G solvation = -18.823983 kcal Electronic energy + Delta-G solvation = -24366.504275 eV Core-core repulsion = 21090.250707 eV Total energy + Delta-G solvation = -3276.253568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53579 -38.07586 -36.54488 -33.96855 -32.46683 -31.55896 -30.41472 -29.49382 -28.18754 -27.14295 -26.79627 -24.61167 -23.26167 -22.06415 -20.28850 -19.60323 -18.96093 -16.94222 -16.58182 -15.76882 -15.25501 -15.09963 -14.76706 -14.29536 -14.04094 -13.78475 -13.54647 -13.37846 -13.00078 -12.85298 -12.79131 -12.57697 -12.35816 -12.08556 -12.00543 -11.84157 -11.49804 -11.22165 -11.20503 -11.07907 -10.94535 -10.75971 -10.58641 -10.43880 -10.29831 -10.15321 -10.08424 -8.71057 -8.38293 -8.23756 -8.18564 -7.42672 -7.20076 -6.06998 -4.45265 1.87893 1.95497 3.21327 3.28218 3.32059 4.12493 4.23070 4.38070 4.74588 4.90814 4.95797 5.12143 5.17457 5.26290 5.33109 5.44716 5.48301 5.54265 5.58931 5.63964 5.69932 5.77175 5.82022 5.95319 5.98745 6.02461 6.04194 6.07303 6.17338 6.21167 6.41438 6.48106 6.50740 6.57261 6.65147 6.94787 7.01378 7.06155 7.34481 7.51802 7.57803 7.60486 8.17975 8.36481 8.54123 9.18416 9.80482 10.76234 10.97915 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.006681 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.800369 B = 4189.968573 C = 5474.091308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 H 0.079 0.921 4 N -0.664 5.664 5 C 0.098 3.902 6 C -0.176 4.176 7 C -0.135 4.135 8 C 0.151 3.849 9 N -0.748 5.748 10 C 0.561 3.439 11 O -0.591 6.591 12 C -0.542 4.542 13 H 0.064 0.936 14 C 0.091 3.909 15 N -0.773 5.773 16 Si 0.901 3.099 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.056 4.056 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.109 4.109 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.336 0.664 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.386 0.614 39 H 0.265 0.735 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.899 -3.628 -2.958 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 H 0.097 0.903 4 N -0.294 5.294 5 C 0.007 3.993 6 C -0.235 4.235 7 C -0.193 4.193 8 C 0.025 3.975 9 N -0.403 5.403 10 C 0.364 3.636 11 O -0.475 6.475 12 C -0.579 4.579 13 H 0.082 0.918 14 C -0.127 4.127 15 N -0.402 5.402 16 Si 0.726 3.274 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.057 4.057 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.128 4.128 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.219 0.781 39 H 0.076 0.924 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.971 -2.865 -2.404 15.432 hybrid contribution -0.099 -0.546 -0.146 0.574 sum -15.070 -3.411 -2.551 15.661 Atomic orbital electron populations 1.22357 0.95767 1.02281 1.01954 1.20426 0.92455 0.97156 0.88780 0.90257 1.60513 1.31491 1.30298 1.07140 1.21281 0.94130 0.91210 0.92684 1.22547 0.99464 0.99662 1.01868 1.21781 1.00789 1.01155 0.95574 1.20843 0.89200 0.91001 0.96420 1.45830 1.24241 1.07074 1.63176 1.18111 0.79055 0.89679 0.76715 1.90566 1.73675 1.22672 1.60561 1.20846 1.10749 0.93227 1.33086 0.91761 1.25634 0.97436 0.95498 0.94176 1.70008 1.24976 1.19895 1.25311 0.86477 0.80831 0.82160 0.77972 1.19938 1.20632 1.18953 1.19618 0.98509 0.93777 0.93824 1.20752 0.99271 0.93866 0.96949 1.21034 1.00012 0.99277 0.93976 1.21002 1.00359 0.94204 0.98592 1.20982 0.99502 0.94601 0.98245 1.20897 0.99075 0.99276 0.93509 0.92030 0.92615 0.92087 0.84488 0.92772 0.91993 0.92386 0.92103 0.91250 0.93343 0.93671 0.94017 0.78137 0.92427 0.86439 0.86899 0.86936 0.86791 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.97 37.16 0.33 -1.36 16 2 C 0.12 1.62 1.81 -68.87 -0.12 1.49 16 3 H 0.08 1.19 4.59 -51.93 -0.24 0.95 16 4 N -0.66 -8.48 4.73 -94.26 -0.45 -8.93 16 5 C 0.10 1.34 0.61 -131.60 -0.08 1.26 16 6 C -0.18 -2.00 7.76 37.16 0.29 -1.72 16 7 C -0.14 -1.71 8.51 37.15 0.32 -1.39 16 8 C 0.15 2.94 4.26 -4.04 -0.02 2.92 16 9 N -0.75 -17.08 5.15 -61.72 -0.32 -17.40 16 10 C 0.56 16.37 7.72 -12.99 -0.10 16.27 16 11 O -0.59 -19.62 15.11 5.21 0.08 -19.54 16 12 C -0.54 -15.88 9.53 -35.63 -0.34 -16.22 16 13 H 0.06 1.77 7.86 -52.49 -0.41 1.36 16 14 C 0.09 2.64 5.49 -17.37 -0.10 2.55 16 15 N -0.77 -23.89 11.90 55.55 0.66 -23.23 16 16 Si 0.90 21.01 29.56 -169.99 -5.03 15.98 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C -0.06 -0.89 4.95 -104.62 -0.52 -1.41 16 21 C -0.09 -1.38 9.32 -39.58 -0.37 -1.75 16 22 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 16 23 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 24 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.34 3.55 8.10 -39.29 -0.32 3.23 16 30 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 6.65 -51.93 -0.35 0.34 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.97 7.29 -51.93 -0.38 0.60 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.89 6.53 -51.93 -0.34 0.55 16 38 H 0.39 8.25 7.31 -40.82 -0.30 7.95 16 39 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 40 H 0.12 1.60 7.73 -52.49 -0.41 1.19 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.11 1.84 8.04 -52.48 -0.42 1.41 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -34.95 357.66 -8.85 -43.81 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.91 Total: 12.61 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.28 Total: -8.70 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.10 Total: -49.55 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.08 Total: -19.54 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.95 -8.85 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153754177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.982 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds