Wall clock time and date at job start Tue Mar 31 2020 07:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47106 * 2 1 4 4 N 1.46894 * 109.47456 * 239.99459 * 2 1 3 5 5 C 1.46904 * 111.00054 * 113.99119 * 4 2 1 6 6 C 1.53004 * 109.47016 * 302.04093 * 5 4 2 7 7 C 1.52992 * 109.47271 * 182.03882 * 5 4 2 8 8 C 1.52998 * 109.46839 * 62.04049 * 5 4 2 9 9 N 1.46502 * 109.47634 * 55.53763 * 8 5 4 10 10 C 1.34774 * 120.00077 * 179.97438 * 9 8 5 11 11 O 1.21679 * 120.00012 * 0.02562 * 10 9 8 12 12 C 1.46380 * 119.99591 * 180.02562 * 10 9 8 13 13 H 1.07995 * 120.00076 * 6.61075 * 12 10 9 14 14 C 1.40050 * 119.99747 * 186.61114 * 12 10 9 15 15 N 1.30669 * 119.99718 * 6.67570 * 14 12 10 16 16 Si 1.86797 * 119.99754 * 186.67151 * 14 12 10 17 17 H 1.48503 * 109.47211 * 94.99076 * 16 14 12 18 18 H 1.48502 * 109.46870 * 214.99029 * 16 14 12 19 19 H 1.48496 * 109.47133 * 334.98841 * 16 14 12 20 20 C 1.50699 * 109.47013 * 119.99242 * 2 1 3 21 21 C 1.38239 * 119.99701 * 79.72944 * 20 2 1 22 22 C 1.38237 * 119.99894 * 179.80737 * 21 20 2 23 23 C 1.38239 * 120.00184 * 0.40275 * 22 21 20 24 24 C 1.38236 * 119.99778 * 359.85135 * 23 22 21 25 25 C 1.38233 * 120.00576 * 260.00599 * 20 2 1 26 26 H 1.08997 * 109.47476 * 300.65818 * 1 2 3 27 27 H 1.09005 * 109.46878 * 60.66143 * 1 2 3 28 28 H 1.09004 * 109.47331 * 180.65821 * 1 2 3 29 29 H 1.00903 * 111.00041 * 350.03856 * 4 2 1 30 30 H 1.09000 * 109.46788 * 306.88917 * 6 5 4 31 31 H 1.08999 * 109.46717 * 186.88402 * 6 5 4 32 32 H 1.09004 * 109.47050 * 66.88485 * 6 5 4 33 33 H 1.08999 * 109.47161 * 185.42534 * 7 5 4 34 34 H 1.09005 * 109.47579 * 305.42909 * 7 5 4 35 35 H 1.09005 * 109.47115 * 65.43035 * 7 5 4 36 36 H 1.09003 * 109.46963 * 175.53728 * 8 5 4 37 37 H 1.09006 * 109.47569 * 295.53582 * 8 5 4 38 38 H 0.96998 * 119.99243 * 359.97438 * 9 8 5 39 39 H 0.97004 * 119.99658 * 180.02562 * 15 14 12 40 40 H 1.07994 * 120.00393 * 0.02562 * 21 20 2 41 41 H 1.08002 * 120.00133 * 180.22526 * 22 21 20 42 42 H 1.07993 * 120.00558 * 179.83144 * 23 22 21 43 43 H 1.08002 * 119.99955 * 179.97438 * 24 23 22 44 44 H 1.08008 * 119.99818 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.7209 0.2372 -2.0947 6 6 1.7781 1.3768 -2.4865 7 6 3.1708 -0.5079 -3.3529 8 6 3.9442 0.8113 -1.3772 9 7 4.7948 -0.2855 -0.9082 10 6 5.9364 -0.0164 -0.2444 11 8 6.2606 1.1374 -0.0343 12 6 6.7865 -1.1124 0.2237 13 1 6.5565 -2.1304 -0.0537 14 6 7.8979 -0.8406 1.0313 15 7 8.1027 0.3714 1.4745 16 14 9.0874 -2.2109 1.4748 17 1 10.2250 -2.2072 0.5202 18 1 9.5972 -1.9969 2.8531 19 1 8.3858 -3.5177 1.4039 20 6 2.0323 -0.7102 1.2306 21 6 2.0614 -2.0918 1.2676 22 6 2.5259 -2.7433 2.3949 23 6 2.9535 -2.0134 3.4882 24 6 2.9194 -0.6319 3.4531 25 6 2.4586 0.0196 2.3244 26 1 -0.3634 0.5240 0.8840 27 1 -0.3633 0.5036 -0.8959 28 1 -0.3634 -1.0276 0.0118 29 1 1.2655 -1.1589 -1.6809 30 1 0.8530 0.9616 -2.8866 31 1 2.2549 1.9986 -3.2442 32 1 1.5546 1.9819 -1.6078 33 1 3.7735 0.1561 -3.9725 34 1 3.7640 -1.3769 -3.0680 35 1 2.2954 -0.8339 -3.9147 36 1 4.5085 1.4392 -2.0668 37 1 3.6188 1.4085 -0.5253 38 1 4.5361 -1.2053 -1.0754 39 1 8.8727 0.5597 2.0336 40 1 1.7246 -2.6622 0.4147 41 1 2.5520 -3.8227 2.4225 42 1 3.3138 -2.5224 4.3699 43 1 3.2531 -0.0616 4.3075 44 1 2.4320 1.0990 2.2969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153754177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:53 Heat of formation + Delta-G solvation = -42.846727 kcal Electronic energy + Delta-G solvation = -24367.545979 eV Core-core repulsion = 21090.250707 eV Total energy + Delta-G solvation = -3277.295272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76652 -39.52959 -38.46138 -35.33142 -34.56893 -33.45715 -31.66186 -30.70065 -29.16868 -28.84713 -28.11370 -26.39517 -24.37773 -23.31889 -21.65592 -21.44437 -20.39287 -18.93468 -17.77837 -17.36887 -16.99878 -16.42966 -16.08796 -15.82508 -15.75756 -15.16744 -14.86574 -14.71478 -14.42937 -14.14586 -14.06387 -13.91791 -13.67053 -13.42482 -13.21672 -13.07375 -12.95143 -12.83347 -12.71031 -12.53168 -12.40425 -12.19044 -12.14626 -11.98763 -11.81421 -11.55144 -11.42196 -10.89332 -9.77776 -9.65279 -9.42373 -9.29147 -9.25282 -8.26280 -6.75531 0.62806 0.68025 1.37867 1.39740 1.54607 2.26314 2.54089 2.95692 3.16635 3.43032 3.70617 3.81542 3.95570 4.05814 4.16109 4.22458 4.25804 4.35519 4.38795 4.41166 4.67392 4.69400 4.73501 4.80424 4.82364 4.89136 4.93485 5.02009 5.06818 5.11380 5.19639 5.25579 5.27879 5.35612 5.36234 5.46536 5.70853 5.75554 5.82399 5.97933 6.18589 6.30191 6.35713 6.46742 6.70827 6.93577 7.73122 8.59061 8.76402 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.006681 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.800369 B = 4189.968573 C = 5474.091308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.056 0.944 4 N -0.666 5.666 5 C 0.112 3.888 6 C -0.170 4.170 7 C -0.131 4.131 8 C 0.153 3.847 9 N -0.729 5.729 10 C 0.546 3.454 11 O -0.643 6.643 12 C -0.570 4.570 13 H 0.079 0.921 14 C 0.033 3.967 15 N -0.825 5.825 16 Si 0.989 3.011 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.249 1.249 20 C -0.062 4.062 21 C -0.096 4.096 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.140 4.140 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.357 0.643 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.026 0.974 37 H 0.016 0.984 38 H 0.396 0.604 39 H 0.271 0.729 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.237 -6.387 -4.314 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 H 0.074 0.926 4 N -0.300 5.300 5 C 0.021 3.979 6 C -0.229 4.229 7 C -0.189 4.189 8 C 0.027 3.973 9 N -0.382 5.382 10 C 0.349 3.651 11 O -0.531 6.531 12 C -0.607 4.607 13 H 0.097 0.903 14 C -0.181 4.181 15 N -0.455 5.455 16 Si 0.808 3.192 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.172 1.172 20 C -0.063 4.063 21 C -0.114 4.114 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.159 4.159 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.179 0.821 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.035 0.965 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.134 0.866 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.375 -5.657 -3.799 17.736 hybrid contribution 0.281 0.359 0.267 0.528 sum -16.093 -5.298 -3.532 17.307 Atomic orbital electron populations 1.22257 0.92842 1.03347 1.02823 1.20342 0.94613 0.95472 0.88042 0.92588 1.60329 1.32486 1.30155 1.06984 1.21073 0.92105 0.92379 0.92390 1.22486 1.00057 0.98671 1.01717 1.21753 1.02027 1.00151 0.94978 1.20971 0.90911 0.89918 0.95511 1.45448 1.22904 1.08427 1.61450 1.18463 0.80558 0.89062 0.77012 1.90519 1.75328 1.24504 1.62779 1.21324 1.11777 0.93839 1.33724 0.90322 1.26851 0.99326 0.98559 0.93390 1.70174 1.26078 1.23008 1.26221 0.85146 0.77724 0.78346 0.77947 1.18865 1.19747 1.17188 1.19937 0.97800 0.94390 0.94165 1.21050 0.98975 0.93659 0.97687 1.21433 0.99039 1.00724 0.93588 1.21299 1.00651 0.93842 0.99847 1.21213 1.00231 0.95628 0.98541 1.21072 1.00782 0.99213 0.94800 0.92383 0.90613 0.90795 0.82143 0.89523 0.91838 0.93167 0.92670 0.92736 0.89746 0.95616 0.96530 0.76988 0.91889 0.84231 0.84274 0.85164 0.86632 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.97 71.98 0.65 -2.13 16 2 C 0.13 3.21 1.81 44.17 0.08 3.29 16 3 H 0.06 1.72 4.59 -2.39 -0.01 1.71 16 4 N -0.67 -15.54 4.73 -452.12 -2.14 -17.68 16 5 C 0.11 2.89 0.61 3.52 0.00 2.89 16 6 C -0.17 -3.48 7.76 71.98 0.56 -2.92 16 7 C -0.13 -2.99 8.51 71.98 0.61 -2.38 16 8 C 0.15 6.09 4.26 86.38 0.37 6.46 16 9 N -0.73 -34.04 5.15 -467.40 -2.41 -36.45 16 10 C 0.55 32.97 7.72 86.36 0.67 33.64 16 11 O -0.64 -44.93 15.11 -4.28 -0.06 -45.00 16 12 C -0.57 -33.86 9.53 24.83 0.24 -33.62 16 13 H 0.08 4.29 7.86 -2.91 -0.02 4.27 16 14 C 0.03 1.94 5.49 85.31 0.47 2.40 16 15 N -0.82 -52.56 11.90 21.84 0.26 -52.30 16 16 Si 0.99 43.04 29.56 68.60 2.03 45.06 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 20 C -0.06 -1.96 4.95 -19.87 -0.10 -2.05 16 21 C -0.10 -2.78 9.32 22.27 0.21 -2.57 16 22 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 23 C -0.14 -4.44 10.05 22.27 0.22 -4.22 16 24 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 25 C -0.14 -5.09 9.67 22.27 0.22 -4.87 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.07 7.66 -2.38 -0.02 1.06 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.36 6.04 8.10 -89.69 -0.73 5.31 16 30 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.12 6.65 -2.39 -0.02 1.11 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.41 7.29 -2.38 -0.02 1.39 16 35 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.02 0.75 6.53 -2.38 -0.02 0.73 16 38 H 0.40 16.84 7.31 -92.71 -0.68 16.16 16 39 H 0.27 15.71 8.29 -92.71 -0.77 14.94 16 40 H 0.14 3.37 7.73 -2.91 -0.02 3.34 16 41 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 43 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 44 H 0.10 3.69 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -80.17 357.66 1.91 -78.26 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.41 Total: 42.47 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.63 Total: -14.38 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -4.29 Total: -106.42 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.06 Total: -45.00 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -80.17 1.91 -78.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153754177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.414 kcal (2) G-P(sol) polarization free energy of solvation -80.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds