Wall clock time and date at job start Tue Mar 31 2020 07:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08988 * 109.47504 * 2 1 4 4 N 1.46901 * 109.46922 * 120.00351 * 2 1 3 5 5 C 1.46897 * 110.99876 * 248.26111 * 4 2 1 6 6 C 1.53001 * 109.47474 * 295.07563 * 5 4 2 7 7 C 1.53004 * 109.47077 * 55.07435 * 5 4 2 8 8 C 1.52997 * 109.47202 * 175.06949 * 5 4 2 9 9 N 1.46502 * 109.46944 * 60.00551 * 8 5 4 10 10 C 1.34776 * 119.99920 * 179.97438 * 9 8 5 11 11 O 1.21682 * 120.00424 * 359.97438 * 10 9 8 12 12 C 1.46377 * 119.99645 * 179.97438 * 10 9 8 13 13 H 1.07999 * 120.00375 * 359.97438 * 12 10 9 14 14 C 1.40050 * 119.99706 * 179.97438 * 12 10 9 15 15 N 1.30668 * 119.99984 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99862 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47282 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47229 * 120.00239 * 16 14 12 19 19 H 1.48502 * 109.47210 * 240.00051 * 16 14 12 20 20 C 1.50707 * 109.47026 * 239.99857 * 2 1 3 21 21 C 1.38234 * 119.99569 * 100.00013 * 20 2 1 22 22 C 1.38235 * 119.99534 * 179.97438 * 21 20 2 23 23 C 1.38232 * 120.00259 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00051 * 359.97438 * 23 22 21 25 25 C 1.38231 * 119.99892 * 279.91118 * 20 2 1 26 26 H 1.09001 * 109.47431 * 175.28711 * 1 2 3 27 27 H 1.08997 * 109.46983 * 295.28967 * 1 2 3 28 28 H 1.08998 * 109.46878 * 55.29137 * 1 2 3 29 29 H 1.00901 * 111.00133 * 124.30615 * 4 2 1 30 30 H 1.09004 * 109.47047 * 58.88652 * 6 5 4 31 31 H 1.08993 * 109.47140 * 178.88534 * 6 5 4 32 32 H 1.08998 * 109.46711 * 298.88963 * 6 5 4 33 33 H 1.08999 * 109.47174 * 53.35411 * 7 5 4 34 34 H 1.08993 * 109.47559 * 173.36182 * 7 5 4 35 35 H 1.09000 * 109.47115 * 293.35820 * 7 5 4 36 36 H 1.09000 * 109.46788 * 179.97438 * 8 5 4 37 37 H 1.08992 * 109.47430 * 300.00462 * 8 5 4 38 38 H 0.97003 * 120.00092 * 359.97438 * 9 8 5 39 39 H 0.97001 * 119.99953 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.00215 * 0.26172 * 21 20 2 41 41 H 1.08005 * 119.99773 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.00282 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.99829 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00493 * 0.08927 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.6740 0.2471 2.1196 6 6 3.9317 0.8154 1.4592 7 6 1.7117 1.3894 2.4515 8 6 3.0599 -0.4847 3.4066 9 7 3.9814 -1.5785 3.0888 10 6 4.4584 -2.3653 4.0736 11 8 4.1241 -2.1670 5.2267 12 6 5.3786 -3.4585 3.7560 13 1 5.6749 -3.6348 2.7325 14 6 5.8747 -4.2758 4.7794 15 7 5.5157 -4.0628 6.0176 16 14 7.0484 -5.6713 4.3740 17 1 7.2942 -5.7019 2.9097 18 1 8.3334 -5.4605 5.0878 19 1 6.4503 -6.9614 4.8020 20 6 2.0323 -0.7105 -1.2305 21 6 2.4587 0.0194 -2.3243 22 6 2.9200 -0.6323 -3.4528 23 6 2.9554 -2.0137 -3.4872 24 6 2.5300 -2.7436 -2.3930 25 6 2.0684 -2.0919 -1.2646 26 1 -0.3634 -1.0242 -0.0844 27 1 -0.3633 0.4390 0.9292 28 1 -0.3633 0.5852 -0.8448 29 1 2.6407 -1.4484 0.9523 30 1 3.6590 1.3198 0.5322 31 1 4.4063 1.5275 2.1342 32 1 4.6256 0.0038 1.2407 33 1 0.7694 0.9774 2.8125 34 1 2.1509 2.0220 3.2228 35 1 1.5293 1.9827 1.5555 36 1 3.5459 0.2125 4.0892 37 1 2.1640 -0.8895 3.8771 38 1 4.2481 -1.7364 2.1697 39 1 5.8590 -4.6291 6.7263 40 1 2.4358 1.0988 -2.2954 41 1 3.2527 -0.0620 -4.3075 42 1 3.3154 -2.5229 -4.3691 43 1 2.5572 -3.8229 -2.4201 44 1 1.7353 -2.6621 -0.4101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153754284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:57 Heat of formation + Delta-G solvation = -19.028092 kcal Electronic energy + Delta-G solvation = -23502.955339 eV Core-core repulsion = 20226.692920 eV Total energy + Delta-G solvation = -3276.262419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.94395 -38.35752 -36.70511 -34.16325 -32.52821 -31.60937 -31.02568 -29.59867 -28.72918 -27.07086 -26.85176 -24.71661 -23.44254 -22.63254 -20.58883 -19.73373 -18.81345 -17.60310 -16.87131 -15.91909 -15.53918 -15.22798 -14.80938 -14.62237 -14.35319 -13.94100 -13.79282 -13.46264 -13.33097 -13.13958 -12.93713 -12.56984 -12.25543 -12.24075 -12.09070 -11.91315 -11.61955 -11.56229 -11.27530 -11.21525 -11.06251 -10.91345 -10.73852 -10.59737 -10.48738 -10.33744 -10.10874 -8.99330 -8.82069 -8.79966 -8.26886 -7.55281 -7.40821 -6.14133 -4.59026 1.26401 1.32629 3.15059 3.23191 3.27478 3.70656 4.12943 4.18691 4.58197 4.64995 4.80925 4.89260 4.92068 5.01802 5.06604 5.19571 5.30868 5.37892 5.41530 5.50315 5.52231 5.66551 5.71160 5.82291 5.85896 5.91614 5.92173 5.95947 6.00352 6.14841 6.19253 6.31708 6.36258 6.41645 6.43427 6.45877 6.56349 6.70697 6.92502 7.26075 7.47358 7.55342 7.97146 8.16513 8.37893 9.07245 9.58933 10.65311 10.84878 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.004515 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.426025 B = 6200.100287 C = 7575.078925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.118 3.882 3 H 0.070 0.930 4 N -0.668 5.668 5 C 0.099 3.901 6 C -0.177 4.177 7 C -0.138 4.138 8 C 0.149 3.851 9 N -0.764 5.764 10 C 0.556 3.444 11 O -0.581 6.581 12 C -0.545 4.545 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.905 3.095 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.094 4.094 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.109 4.109 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.348 0.652 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.374 0.626 39 H 0.267 0.733 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 8.276 -17.825 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.088 0.912 4 N -0.302 5.302 5 C 0.008 3.992 6 C -0.236 4.236 7 C -0.195 4.195 8 C 0.023 3.977 9 N -0.420 5.420 10 C 0.360 3.640 11 O -0.464 6.464 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.730 3.270 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.095 4.095 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.127 4.127 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.169 0.831 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.206 0.794 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.613 8.397 -16.409 19.943 hybrid contribution 1.647 -0.640 -1.222 2.148 sum -5.966 7.757 -17.632 20.166 Atomic orbital electron populations 1.21821 0.93817 1.02151 1.01203 1.20586 0.95900 0.96639 0.86039 0.91175 1.60859 1.43669 1.11614 1.14026 1.21267 0.92143 0.92355 0.93444 1.22531 0.98785 1.01813 1.00473 1.21883 0.99681 0.96842 1.01141 1.20895 0.93856 0.89708 0.93201 1.46103 1.51373 1.34488 1.10032 1.18181 0.80737 0.81540 0.83589 1.90596 1.62618 1.73052 1.20096 1.20909 1.28676 1.14284 0.94392 0.91606 1.25687 0.95549 0.97408 0.94464 1.70033 1.35814 1.33924 0.99967 0.86364 0.80224 0.81048 0.79379 1.18853 1.20229 1.20184 1.20334 0.98849 0.94143 0.96160 1.21009 0.99575 0.99553 0.93363 1.21095 1.00151 0.94671 0.98058 1.21149 1.00366 0.94212 0.98601 1.21199 0.98650 1.00074 0.93463 1.21126 0.99088 0.94018 0.98514 0.92321 0.91835 0.93223 0.83075 0.93083 0.91962 0.92131 0.91510 0.92091 0.92815 0.93172 0.92552 0.79401 0.92255 0.86437 0.86353 0.86342 0.85960 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.44 37.16 0.35 -1.05 16 2 C 0.12 1.33 1.79 -68.86 -0.12 1.21 16 3 H 0.07 0.76 4.62 -51.94 -0.24 0.52 16 4 N -0.67 -9.09 5.77 -94.25 -0.54 -9.63 16 5 C 0.10 1.41 0.68 -131.60 -0.09 1.32 16 6 C -0.18 -2.38 8.24 37.16 0.31 -2.07 16 7 C -0.14 -1.67 7.57 37.16 0.28 -1.38 16 8 C 0.15 2.88 4.78 -4.04 -0.02 2.86 16 9 N -0.76 -17.00 5.01 -61.72 -0.31 -17.31 16 10 C 0.56 15.95 7.75 -12.99 -0.10 15.85 16 11 O -0.58 -19.08 15.02 5.20 0.08 -19.00 16 12 C -0.55 -15.54 9.54 -35.63 -0.34 -15.88 16 13 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 14 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 15 N -0.77 -23.34 11.83 55.55 0.66 -22.68 16 16 Si 0.91 20.36 29.56 -169.99 -5.02 15.34 16 17 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.09 -1.07 4.82 -104.62 -0.50 -1.57 16 21 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.11 -1.29 8.71 -39.58 -0.34 -1.64 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.68 7.21 -51.93 -0.37 0.30 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.35 5.10 5.42 -39.29 -0.21 4.89 16 30 H 0.05 0.60 6.50 -51.93 -0.34 0.26 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.89 6.83 -51.93 -0.35 0.53 16 33 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.56 6.55 -51.93 -0.34 0.22 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.37 7.44 6.26 -40.82 -0.26 7.19 16 39 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 40 H 0.12 1.03 8.04 -52.49 -0.42 0.61 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.13 1.59 7.33 -52.49 -0.38 1.21 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -33.84 352.79 -8.76 -42.60 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.67 Total: 11.82 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.25 Total: -6.43 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.20 Total: -49.63 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.08 Total: -19.00 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.84 -8.76 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153754284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.570 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds