Wall clock time and date at job start Tue Mar 31 2020 07:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08988 * 109.47504 * 2 1 4 4 N 1.46901 * 109.46922 * 120.00351 * 2 1 3 5 5 C 1.46897 * 110.99876 * 248.26111 * 4 2 1 6 6 C 1.53001 * 109.47474 * 295.07563 * 5 4 2 7 7 C 1.53004 * 109.47077 * 55.07435 * 5 4 2 8 8 C 1.52997 * 109.47202 * 175.06949 * 5 4 2 9 9 N 1.46502 * 109.46944 * 60.00551 * 8 5 4 10 10 C 1.34776 * 119.99920 * 179.97438 * 9 8 5 11 11 O 1.21682 * 120.00424 * 359.97438 * 10 9 8 12 12 C 1.46377 * 119.99645 * 179.97438 * 10 9 8 13 13 H 1.07999 * 120.00375 * 359.97438 * 12 10 9 14 14 C 1.40050 * 119.99706 * 179.97438 * 12 10 9 15 15 N 1.30668 * 119.99984 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99862 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47282 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47229 * 120.00239 * 16 14 12 19 19 H 1.48502 * 109.47210 * 240.00051 * 16 14 12 20 20 C 1.50707 * 109.47026 * 239.99857 * 2 1 3 21 21 C 1.38234 * 119.99569 * 100.00013 * 20 2 1 22 22 C 1.38235 * 119.99534 * 179.97438 * 21 20 2 23 23 C 1.38232 * 120.00259 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00051 * 359.97438 * 23 22 21 25 25 C 1.38231 * 119.99892 * 279.91118 * 20 2 1 26 26 H 1.09001 * 109.47431 * 175.28711 * 1 2 3 27 27 H 1.08997 * 109.46983 * 295.28967 * 1 2 3 28 28 H 1.08998 * 109.46878 * 55.29137 * 1 2 3 29 29 H 1.00901 * 111.00133 * 124.30615 * 4 2 1 30 30 H 1.09004 * 109.47047 * 58.88652 * 6 5 4 31 31 H 1.08993 * 109.47140 * 178.88534 * 6 5 4 32 32 H 1.08998 * 109.46711 * 298.88963 * 6 5 4 33 33 H 1.08999 * 109.47174 * 53.35411 * 7 5 4 34 34 H 1.08993 * 109.47559 * 173.36182 * 7 5 4 35 35 H 1.09000 * 109.47115 * 293.35820 * 7 5 4 36 36 H 1.09000 * 109.46788 * 179.97438 * 8 5 4 37 37 H 1.08992 * 109.47430 * 300.00462 * 8 5 4 38 38 H 0.97003 * 120.00092 * 359.97438 * 9 8 5 39 39 H 0.97001 * 119.99953 * 179.97438 * 15 14 12 40 40 H 1.07998 * 120.00215 * 0.26172 * 21 20 2 41 41 H 1.08005 * 119.99773 * 179.97438 * 22 21 20 42 42 H 1.08006 * 120.00282 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.99829 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00493 * 0.08927 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.6740 0.2471 2.1196 6 6 3.9317 0.8154 1.4592 7 6 1.7117 1.3894 2.4515 8 6 3.0599 -0.4847 3.4066 9 7 3.9814 -1.5785 3.0888 10 6 4.4584 -2.3653 4.0736 11 8 4.1241 -2.1670 5.2267 12 6 5.3786 -3.4585 3.7560 13 1 5.6749 -3.6348 2.7325 14 6 5.8747 -4.2758 4.7794 15 7 5.5157 -4.0628 6.0176 16 14 7.0484 -5.6713 4.3740 17 1 7.2942 -5.7019 2.9097 18 1 8.3334 -5.4605 5.0878 19 1 6.4503 -6.9614 4.8020 20 6 2.0323 -0.7105 -1.2305 21 6 2.4587 0.0194 -2.3243 22 6 2.9200 -0.6323 -3.4528 23 6 2.9554 -2.0137 -3.4872 24 6 2.5300 -2.7436 -2.3930 25 6 2.0684 -2.0919 -1.2646 26 1 -0.3634 -1.0242 -0.0844 27 1 -0.3633 0.4390 0.9292 28 1 -0.3633 0.5852 -0.8448 29 1 2.6407 -1.4484 0.9523 30 1 3.6590 1.3198 0.5322 31 1 4.4063 1.5275 2.1342 32 1 4.6256 0.0038 1.2407 33 1 0.7694 0.9774 2.8125 34 1 2.1509 2.0220 3.2228 35 1 1.5293 1.9827 1.5555 36 1 3.5459 0.2125 4.0892 37 1 2.1640 -0.8895 3.8771 38 1 4.2481 -1.7364 2.1697 39 1 5.8590 -4.6291 6.7263 40 1 2.4358 1.0988 -2.2954 41 1 3.2527 -0.0620 -4.3075 42 1 3.3154 -2.5229 -4.3691 43 1 2.5572 -3.8229 -2.4201 44 1 1.7353 -2.6621 -0.4101 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153754284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:56 Heat of formation + Delta-G solvation = -41.857193 kcal Electronic energy + Delta-G solvation = -23503.945283 eV Core-core repulsion = 20226.692920 eV Total energy + Delta-G solvation = -3277.252363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92055 -39.69754 -38.49275 -35.48716 -34.58787 -33.38059 -31.81256 -30.51842 -29.69492 -28.90570 -28.10729 -26.43166 -24.33658 -23.43047 -21.82255 -21.49946 -20.03481 -19.29818 -18.04118 -17.42293 -17.02557 -16.39767 -16.16304 -15.89438 -15.77817 -15.23286 -14.99772 -14.85038 -14.37816 -14.21095 -14.08868 -14.05808 -13.75103 -13.23816 -13.14660 -13.08554 -12.94251 -12.86043 -12.68512 -12.61959 -12.50188 -12.44248 -12.05175 -11.98001 -11.89677 -11.58228 -11.45531 -10.94239 -9.85489 -9.78969 -9.60794 -9.43212 -9.32904 -8.28210 -6.84212 0.46646 0.53080 1.39477 1.39797 1.57449 2.24758 2.48742 2.89963 3.04316 3.24314 3.65443 3.70409 3.82344 4.01373 4.08334 4.17247 4.19164 4.32115 4.38509 4.59235 4.66272 4.68165 4.69720 4.73823 4.76265 4.87477 4.90485 4.99409 5.05126 5.09973 5.15416 5.17984 5.23104 5.32337 5.38973 5.46443 5.60404 5.66324 5.66825 5.87937 6.14133 6.20170 6.23647 6.31797 6.42680 6.87890 7.54963 8.51209 8.69209 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.004515 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.426025 B = 6200.100287 C = 7575.078925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.123 3.877 3 H 0.083 0.917 4 N -0.678 5.678 5 C 0.111 3.889 6 C -0.171 4.171 7 C -0.133 4.133 8 C 0.151 3.849 9 N -0.747 5.747 10 C 0.538 3.462 11 O -0.633 6.633 12 C -0.572 4.572 13 H 0.084 0.916 14 C 0.029 3.971 15 N -0.822 5.822 16 Si 0.996 3.004 17 H -0.248 1.248 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.128 4.128 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.339 0.661 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 8.738 -20.768 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.014 3.986 3 H 0.100 0.900 4 N -0.311 5.311 5 C 0.019 3.981 6 C -0.230 4.230 7 C -0.191 4.191 8 C 0.026 3.974 9 N -0.401 5.401 10 C 0.342 3.658 11 O -0.521 6.521 12 C -0.609 4.609 13 H 0.102 0.898 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.816 3.184 17 H -0.171 1.171 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.146 4.146 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.222 0.778 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.868 8.895 -19.417 22.435 hybrid contribution 1.349 -0.750 -0.351 1.583 sum -5.519 8.145 -19.768 22.081 Atomic orbital electron populations 1.21798 0.93318 1.01678 1.01881 1.20610 0.96156 0.96801 0.85005 0.89951 1.60846 1.43291 1.11608 1.15333 1.21104 0.93450 0.92377 0.91122 1.22473 0.97730 1.01343 1.01482 1.21865 0.98667 0.96096 1.02491 1.20974 0.91806 0.88624 0.96001 1.45726 1.50740 1.34067 1.09595 1.18595 0.80999 0.82437 0.83762 1.90548 1.64516 1.74626 1.22406 1.21427 1.29070 1.14747 0.95652 0.89763 1.26949 0.97277 1.00466 0.93852 1.70200 1.37594 1.35758 1.01646 0.84996 0.77089 0.76362 0.79971 1.17074 1.19298 1.19336 1.20347 0.99518 0.93938 0.96598 1.21269 0.99056 1.00587 0.93066 1.21445 0.99289 0.94798 0.98635 1.21456 0.99757 0.94666 0.98882 1.21394 0.98882 1.00764 0.93636 1.21130 1.00279 0.94555 0.98635 0.93622 0.91981 0.91442 0.83999 0.90499 0.92007 0.93655 0.92046 0.91766 0.90147 0.94710 0.95137 0.77800 0.91636 0.84507 0.83900 0.84287 0.85222 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.44 71.98 0.68 -1.86 16 2 C 0.12 2.57 1.79 44.17 0.08 2.65 16 3 H 0.08 1.52 4.62 -2.39 -0.01 1.51 16 4 N -0.68 -18.19 5.77 -452.10 -2.61 -20.80 16 5 C 0.11 3.10 0.68 3.53 0.00 3.10 16 6 C -0.17 -4.33 8.24 71.98 0.59 -3.74 16 7 C -0.13 -3.04 7.57 71.98 0.54 -2.49 16 8 C 0.15 6.07 4.78 86.38 0.41 6.48 16 9 N -0.75 -34.32 5.01 -467.42 -2.34 -36.66 16 10 C 0.54 32.05 7.75 86.36 0.67 32.72 16 11 O -0.63 -43.71 15.02 -4.29 -0.06 -43.77 16 12 C -0.57 -33.11 9.54 24.83 0.24 -32.87 16 13 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 14 C 0.03 1.67 5.50 85.31 0.47 2.14 16 15 N -0.82 -51.35 11.83 21.84 0.26 -51.10 16 16 Si 1.00 41.68 29.56 68.60 2.03 43.71 16 17 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 C -0.10 -2.18 4.82 -19.86 -0.10 -2.28 16 21 C -0.12 -2.18 9.67 22.27 0.22 -1.96 16 22 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 23 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 24 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 25 C -0.13 -2.97 8.71 22.27 0.19 -2.78 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.23 7.21 -2.39 -0.02 1.22 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.34 10.02 5.42 -89.69 -0.49 9.54 16 30 H 0.08 1.56 6.50 -2.39 -0.02 1.55 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.28 6.83 -2.39 -0.02 1.26 16 33 H 0.06 1.47 7.75 -2.39 -0.02 1.46 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.42 6.55 -2.39 -0.02 1.41 16 36 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.39 15.71 6.26 -92.71 -0.58 15.13 16 39 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 40 H 0.14 1.87 8.04 -2.91 -0.02 1.85 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.12 2.94 7.33 -2.91 -0.02 2.92 16 Total: -1.00 -76.34 352.79 1.88 -74.46 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.06 Total: 41.38 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.67 Total: -7.23 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.69 Total: -108.55 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.06 Total: -43.77 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -76.34 1.88 -74.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153754284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.607 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds