Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46311 * 2 1 4 4 C 1.53032 * 109.46586 * 240.01757 * 2 1 3 5 5 C 1.53125 * 109.27871 * 180.81890 * 4 2 1 6 6 H 1.09007 * 109.52064 * 297.68271 * 5 4 2 7 7 N 1.46504 * 109.52310 * 177.56059 * 5 4 2 8 8 C 1.39780 * 119.99918 * 154.99658 * 7 5 4 9 9 C 1.38950 * 120.00573 * 180.02562 * 8 7 5 10 10 C 1.38008 * 119.99382 * 180.02562 * 9 8 7 11 11 C 1.38903 * 120.00636 * 0.02562 * 10 9 8 12 12 O 1.35802 * 119.99115 * 179.70584 * 11 10 9 13 13 C 1.34810 * 117.00036 * 354.44076 * 12 11 10 14 14 H 1.08002 * 120.00171 * 5.05275 * 13 12 11 15 15 C 1.38619 * 120.00082 * 185.05027 * 13 12 11 16 16 N 1.31588 * 119.99580 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47086 * 60.00345 * 17 15 13 19 19 H 1.48509 * 109.47144 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47609 * 300.00295 * 17 15 13 21 21 C 1.38898 * 120.01250 * 359.97109 * 11 10 9 22 22 C 1.38009 * 120.00514 * 0.02562 * 21 11 10 23 23 C 1.53110 * 109.16369 * 57.65344 * 5 4 2 24 24 C 1.53037 * 109.28129 * 302.34847 * 23 5 4 25 25 N 1.46847 * 109.52372 * 59.17384 * 24 23 5 26 26 C 1.46903 * 111.00243 * 174.16075 * 25 24 23 27 27 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47569 * 299.97909 * 1 2 3 29 29 H 1.09002 * 109.46742 * 59.98062 * 1 2 3 30 30 H 1.08994 * 109.50359 * 60.87888 * 4 2 1 31 31 H 1.09003 * 109.53700 * 300.77731 * 4 2 1 32 32 H 0.96999 * 119.99796 * 334.99872 * 7 5 4 33 33 H 1.08000 * 120.00358 * 0.03930 * 9 8 7 34 34 H 1.08005 * 119.99591 * 179.97438 * 10 9 8 35 35 H 0.97002 * 119.99770 * 179.97438 * 16 15 13 36 36 H 1.07991 * 119.99505 * 180.02562 * 21 11 10 37 37 H 1.07998 * 120.00532 * 180.02562 * 22 21 11 38 38 H 1.09005 * 109.50164 * 62.28283 * 23 5 4 39 39 H 1.09000 * 109.50795 * 182.40251 * 23 5 4 40 40 H 1.08999 * 109.46200 * 299.16368 * 24 23 5 41 41 H 1.09002 * 109.45916 * 179.18582 * 24 23 5 42 42 H 1.08998 * 109.47545 * 184.21147 * 26 25 24 43 43 H 1.08994 * 109.47332 * 304.21317 * 26 25 24 44 44 H 1.09002 * 109.46879 * 64.21446 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 3.5711 -0.7365 -1.2351 6 1 3.9459 0.2866 -1.2680 7 7 4.0644 -1.4762 -2.3995 8 6 5.3396 -1.2112 -2.9070 9 6 5.8074 -1.9123 -4.0116 10 6 7.0667 -1.6509 -4.5121 11 6 7.8667 -0.6873 -3.9113 12 8 9.1081 -0.4345 -4.4003 13 6 9.5477 -1.2307 -5.3955 14 1 8.8904 -1.9731 -5.8235 15 6 10.8434 -1.0964 -5.8694 16 7 11.6444 -0.1922 -5.3476 17 14 11.4523 -2.1991 -7.2488 18 1 10.6072 -1.9977 -8.4531 19 1 12.8616 -1.8579 -7.5697 20 1 11.3726 -3.6185 -6.8198 21 6 7.3993 0.0137 -2.8071 22 6 6.1400 -0.2473 -2.3062 23 6 4.0546 -1.4191 0.0472 24 6 3.4862 -0.6779 1.2595 25 7 2.0191 -0.6917 1.1996 26 6 1.4369 -0.1104 2.4166 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5142 -0.8898 30 1 1.6898 -0.1983 -2.1398 31 1 1.6658 -1.7448 -1.2581 32 1 3.5060 -2.1498 -2.8183 33 1 5.1855 -2.6617 -4.4787 34 1 7.4305 -2.1962 -5.3705 35 1 12.5512 -0.0985 -5.6790 36 1 8.0213 0.7631 -2.3404 37 1 5.7765 0.2981 -1.4479 38 1 3.7121 -2.4539 0.0600 39 1 5.1437 -1.3952 0.0838 40 1 3.8402 0.3530 1.2536 41 1 3.8170 -1.1703 2.1740 42 1 0.3513 -0.2008 2.3792 43 1 1.8158 -0.6412 3.2899 44 1 1.7117 0.9423 2.4838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155810801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = 5.099703 kcal Electronic energy + Delta-G solvation = -22773.927967 eV Core-core repulsion = 19498.711808 eV Total energy + Delta-G solvation = -3275.216159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82426 -38.80937 -37.00382 -34.87953 -32.65381 -32.23659 -31.42794 -30.10045 -27.92202 -26.81459 -25.97405 -24.89521 -23.20146 -22.08240 -21.43786 -20.35688 -19.88795 -17.78201 -17.06545 -16.41299 -15.92130 -15.69507 -15.24632 -14.75422 -14.47051 -14.37931 -13.91937 -13.82009 -13.47378 -13.19807 -12.93665 -12.69083 -12.44608 -12.42265 -12.25923 -12.16082 -12.00650 -11.64480 -11.58069 -11.41956 -11.20728 -11.03040 -10.97064 -10.66426 -10.54024 -10.45475 -10.31272 -9.21271 -9.13256 -8.57078 -8.41100 -8.14135 -6.36373 -6.29844 -3.87247 2.23080 2.60634 3.20158 3.21451 3.23825 3.62574 3.79299 4.08044 4.54382 4.65864 4.70004 4.76210 4.94014 5.05514 5.16191 5.19070 5.22199 5.29453 5.32519 5.35351 5.46215 5.49024 5.55760 5.59401 5.65607 5.70136 5.80666 5.81464 5.87636 5.94756 6.06062 6.21901 6.25240 6.34028 6.58204 6.82671 6.86819 6.89720 6.94962 7.17008 7.34641 7.48364 7.67727 8.02543 8.14427 8.29495 9.15852 9.90766 10.88734 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.043093 B = 0.002735 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.600109 B =10235.086480 C =10555.676709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.070 0.930 7 N -0.754 5.754 8 C 0.126 3.874 9 C -0.143 4.143 10 C -0.190 4.190 11 C 0.113 3.887 12 O -0.189 6.189 13 C -0.387 4.387 14 H 0.087 0.913 15 C 0.036 3.964 16 N -0.870 5.870 17 Si 0.937 3.063 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.272 1.272 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.133 4.133 24 C 0.057 3.943 25 N -0.539 5.539 26 C 0.021 3.979 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.390 0.610 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.267 0.733 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.517 -0.934 11.443 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 H 0.059 0.941 4 C -0.155 4.155 5 C 0.054 3.946 6 H 0.088 0.912 7 N -0.388 5.388 8 C 0.029 3.971 9 C -0.165 4.165 10 C -0.209 4.209 11 C 0.060 3.940 12 O -0.094 6.094 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.167 4.167 16 N -0.507 5.507 17 Si 0.763 3.237 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.170 4.170 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.071 4.071 25 N -0.264 5.264 26 C -0.127 4.127 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.223 0.777 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.235 -1.037 11.555 23.325 hybrid contribution 0.371 -0.040 -0.777 0.862 sum -19.864 -1.077 10.778 22.625 Atomic orbital electron populations 1.21916 0.94212 1.02627 1.01755 1.21562 0.95380 0.95430 0.90087 0.94053 1.21880 0.95031 1.01799 0.96812 1.20703 0.92719 0.95683 0.85523 0.91186 1.44257 1.15468 1.45340 1.33727 1.17397 0.86165 0.97968 0.95614 1.20233 0.96686 1.01949 0.97624 1.20989 0.94697 1.02165 1.03091 1.19234 0.87174 0.94390 0.93170 1.83985 1.25151 1.51937 1.48331 1.21182 0.97288 1.16027 1.11843 0.89533 1.25209 0.94953 0.97637 0.98900 1.70044 1.07106 1.32431 1.41086 0.85841 0.78132 0.79590 0.80173 1.19696 1.20437 1.19692 1.20022 0.96332 1.03357 0.97321 1.20188 0.94451 1.00483 1.01781 1.22132 1.00922 1.00503 0.93671 1.22090 0.86700 0.99070 0.99242 1.61975 1.07501 1.54938 1.02022 1.22417 1.00615 0.97207 0.92458 0.91707 0.92429 0.92094 0.91037 0.90772 0.77668 0.87660 0.85558 0.92280 0.86624 0.87229 0.91037 0.90818 0.94847 0.90642 0.91007 0.91498 0.95791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.77 37.16 0.33 -0.73 16 2 C 0.08 0.74 2.44 -67.72 -0.17 0.58 16 3 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -1.11 4.85 -26.65 -0.13 -1.24 16 5 C 0.16 1.85 2.21 -67.81 -0.15 1.70 16 6 H 0.07 0.89 6.48 -51.92 -0.34 0.55 16 7 N -0.75 -10.14 5.26 -51.99 -0.27 -10.41 16 8 C 0.13 2.19 6.64 -83.70 -0.56 1.63 16 9 C -0.14 -2.66 9.89 -39.40 -0.39 -3.05 16 10 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 11 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 12 O -0.19 -5.54 9.76 -0.06 0.00 -5.54 16 13 C -0.39 -11.10 9.48 30.87 0.29 -10.81 16 14 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 15 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 16 N -0.87 -26.25 13.67 55.48 0.76 -25.49 16 17 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 C -0.15 -3.25 9.98 -39.42 -0.39 -3.65 16 22 C -0.15 -2.69 8.89 -39.40 -0.35 -3.04 16 23 C -0.13 -1.49 5.63 -26.66 -0.15 -1.64 16 24 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 25 N -0.54 -4.96 4.75 -234.93 -1.11 -6.07 16 26 C 0.02 0.16 9.05 60.07 0.54 0.70 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 4.66 8.62 -40.82 -0.35 4.31 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 2.81 5.63 -52.48 -0.30 2.51 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 37 H 0.11 1.74 6.10 -52.49 -0.32 1.42 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.07 0.47 6.21 -51.93 -0.32 0.15 16 43 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 44 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -31.23 346.94 -9.12 -40.35 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.83 Total: 5.99 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -1.86 Total: -20.12 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.63 Total: -41.98 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.23 -9.12 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155810801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.446 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds