Wall clock time and date at job start Tue Mar 31 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46311 * 2 1 4 4 C 1.53032 * 109.46586 * 240.01757 * 2 1 3 5 5 C 1.53125 * 109.27871 * 180.81890 * 4 2 1 6 6 H 1.09007 * 109.52064 * 297.68271 * 5 4 2 7 7 N 1.46504 * 109.52310 * 177.56059 * 5 4 2 8 8 C 1.39780 * 119.99918 * 154.99658 * 7 5 4 9 9 C 1.38950 * 120.00573 * 180.02562 * 8 7 5 10 10 C 1.38008 * 119.99382 * 180.02562 * 9 8 7 11 11 C 1.38903 * 120.00636 * 0.02562 * 10 9 8 12 12 O 1.35802 * 119.99115 * 179.70584 * 11 10 9 13 13 C 1.34810 * 117.00036 * 354.44076 * 12 11 10 14 14 H 1.08002 * 120.00171 * 5.05275 * 13 12 11 15 15 C 1.38619 * 120.00082 * 185.05027 * 13 12 11 16 16 N 1.31588 * 119.99580 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47086 * 60.00345 * 17 15 13 19 19 H 1.48509 * 109.47144 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47609 * 300.00295 * 17 15 13 21 21 C 1.38898 * 120.01250 * 359.97109 * 11 10 9 22 22 C 1.38009 * 120.00514 * 0.02562 * 21 11 10 23 23 C 1.53110 * 109.16369 * 57.65344 * 5 4 2 24 24 C 1.53037 * 109.28129 * 302.34847 * 23 5 4 25 25 N 1.46847 * 109.52372 * 59.17384 * 24 23 5 26 26 C 1.46903 * 111.00243 * 174.16075 * 25 24 23 27 27 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47569 * 299.97909 * 1 2 3 29 29 H 1.09002 * 109.46742 * 59.98062 * 1 2 3 30 30 H 1.08994 * 109.50359 * 60.87888 * 4 2 1 31 31 H 1.09003 * 109.53700 * 300.77731 * 4 2 1 32 32 H 0.96999 * 119.99796 * 334.99872 * 7 5 4 33 33 H 1.08000 * 120.00358 * 0.03930 * 9 8 7 34 34 H 1.08005 * 119.99591 * 179.97438 * 10 9 8 35 35 H 0.97002 * 119.99770 * 179.97438 * 16 15 13 36 36 H 1.07991 * 119.99505 * 180.02562 * 21 11 10 37 37 H 1.07998 * 120.00532 * 180.02562 * 22 21 11 38 38 H 1.09005 * 109.50164 * 62.28283 * 23 5 4 39 39 H 1.09000 * 109.50795 * 182.40251 * 23 5 4 40 40 H 1.08999 * 109.46200 * 299.16368 * 24 23 5 41 41 H 1.09002 * 109.45916 * 179.18582 * 24 23 5 42 42 H 1.08998 * 109.47545 * 184.21147 * 26 25 24 43 43 H 1.08994 * 109.47332 * 304.21317 * 26 25 24 44 44 H 1.09002 * 109.46879 * 64.21446 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 3.5711 -0.7365 -1.2351 6 1 3.9459 0.2866 -1.2680 7 7 4.0644 -1.4762 -2.3995 8 6 5.3396 -1.2112 -2.9070 9 6 5.8074 -1.9123 -4.0116 10 6 7.0667 -1.6509 -4.5121 11 6 7.8667 -0.6873 -3.9113 12 8 9.1081 -0.4345 -4.4003 13 6 9.5477 -1.2307 -5.3955 14 1 8.8904 -1.9731 -5.8235 15 6 10.8434 -1.0964 -5.8694 16 7 11.6444 -0.1922 -5.3476 17 14 11.4523 -2.1991 -7.2488 18 1 10.6072 -1.9977 -8.4531 19 1 12.8616 -1.8579 -7.5697 20 1 11.3726 -3.6185 -6.8198 21 6 7.3993 0.0137 -2.8071 22 6 6.1400 -0.2473 -2.3062 23 6 4.0546 -1.4191 0.0472 24 6 3.4862 -0.6779 1.2595 25 7 2.0191 -0.6917 1.1996 26 6 1.4369 -0.1104 2.4166 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5142 -0.8898 30 1 1.6898 -0.1983 -2.1398 31 1 1.6658 -1.7448 -1.2581 32 1 3.5060 -2.1498 -2.8183 33 1 5.1855 -2.6617 -4.4787 34 1 7.4305 -2.1962 -5.3705 35 1 12.5512 -0.0985 -5.6790 36 1 8.0213 0.7631 -2.3404 37 1 5.7765 0.2981 -1.4479 38 1 3.7121 -2.4539 0.0600 39 1 5.1437 -1.3952 0.0838 40 1 3.8402 0.3530 1.2536 41 1 3.8170 -1.1703 2.1740 42 1 0.3513 -0.2008 2.3792 43 1 1.8158 -0.6412 3.2899 44 1 1.7117 0.9423 2.4838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155810801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:04 Heat of formation + Delta-G solvation = -15.454016 kcal Electronic energy + Delta-G solvation = -22774.819243 eV Core-core repulsion = 19498.711808 eV Total energy + Delta-G solvation = -3276.107435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.94145 -40.25249 -38.56862 -36.15899 -34.17642 -33.36375 -32.70956 -31.70307 -29.12207 -27.83632 -27.26552 -26.42817 -24.23283 -23.38043 -22.75062 -21.66350 -20.73988 -19.62910 -18.84244 -17.78692 -16.95776 -16.53680 -16.40390 -16.14807 -15.65081 -15.50780 -15.42177 -15.24672 -15.02325 -14.37693 -14.26844 -14.06389 -13.77136 -13.43564 -13.37518 -13.09068 -13.06458 -12.87315 -12.74434 -12.70563 -12.51464 -12.31095 -12.13403 -11.97496 -11.76147 -11.66975 -11.30208 -11.08357 -10.86559 -10.15504 -9.77121 -9.26559 -8.38719 -7.92329 -6.02415 0.58892 0.94133 1.36813 1.48197 1.53023 2.23275 2.60732 2.91881 2.95661 3.25600 3.67582 3.75941 3.90911 3.97808 4.10831 4.15711 4.19735 4.33628 4.42758 4.51120 4.52319 4.57939 4.58540 4.66771 4.73157 4.82083 4.91555 4.92283 4.94316 5.01283 5.09577 5.11678 5.13001 5.22633 5.26680 5.32211 5.42092 5.50763 5.56302 5.79199 5.99919 6.11877 6.14069 6.17959 6.63020 7.05408 7.08334 7.94122 8.85724 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.043093 B = 0.002735 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.600109 B =10235.086480 C =10555.676709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.036 0.964 4 C -0.109 4.109 5 C 0.157 3.843 6 H 0.063 0.937 7 N -0.739 5.739 8 C 0.156 3.844 9 C -0.145 4.145 10 C -0.193 4.193 11 C 0.062 3.938 12 O -0.243 6.243 13 C -0.406 4.406 14 H 0.098 0.902 15 C -0.029 4.029 16 N -0.928 5.928 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.127 4.127 24 C 0.060 3.940 25 N -0.546 5.546 26 C 0.020 3.980 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.403 0.597 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.270 0.730 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.771 -2.207 11.913 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.147 4.147 5 C 0.051 3.949 6 H 0.081 0.919 7 N -0.372 5.372 8 C 0.055 3.945 9 C -0.167 4.167 10 C -0.212 4.212 11 C 0.013 3.987 12 O -0.151 6.151 13 C -0.483 4.483 14 H 0.116 0.884 15 C -0.225 4.225 16 N -0.568 5.568 17 Si 0.836 3.164 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.176 4.176 22 C -0.168 4.168 23 C -0.166 4.166 24 C -0.068 4.068 25 N -0.272 5.272 26 C -0.127 4.127 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.594 -2.327 12.067 26.602 hybrid contribution 1.025 0.367 -0.689 1.289 sum -22.568 -1.960 11.378 25.350 Atomic orbital electron populations 1.21878 0.92735 1.02816 1.02600 1.21599 0.96532 0.94891 0.89576 0.94590 1.21815 0.92946 1.02319 0.97612 1.20875 0.94386 0.94924 0.84724 0.91905 1.44357 1.13841 1.45209 1.33813 1.17512 0.87113 0.95806 0.94081 1.20500 0.95660 1.02660 0.97916 1.21061 0.95856 1.01451 1.02869 1.19721 0.86776 0.97023 0.95229 1.83934 1.27645 1.53741 1.49780 1.21719 0.98082 1.16366 1.12133 0.88439 1.26536 0.94789 0.99314 1.01868 1.70205 1.07685 1.35160 1.43700 0.84676 0.77618 0.77551 0.76530 1.18217 1.19804 1.18298 1.20215 0.97645 1.02994 0.96713 1.20405 0.93184 1.00819 1.02364 1.22030 0.99928 1.00531 0.94158 1.22030 0.87342 0.98742 0.98716 1.61998 1.06945 1.55394 1.02841 1.22471 1.01222 0.97201 0.91840 0.91783 0.91620 0.91329 0.90414 0.90344 0.76153 0.84236 0.86302 0.92159 0.87092 0.84523 0.91267 0.92416 0.95062 0.89977 0.89911 0.90994 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.77 71.98 0.63 -0.95 16 2 C 0.08 1.21 2.44 44.93 0.11 1.32 16 3 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 4 C -0.11 -1.70 4.85 30.65 0.15 -1.55 16 5 C 0.16 3.15 2.21 45.07 0.10 3.25 16 6 H 0.06 1.41 6.48 -2.38 -0.02 1.40 16 7 N -0.74 -17.36 5.26 -318.41 -1.67 -19.03 16 8 C 0.16 5.02 6.64 38.22 0.25 5.27 16 9 C -0.15 -5.12 9.89 22.39 0.22 -4.90 16 10 C -0.19 -8.63 9.16 22.37 0.20 -8.43 16 11 C 0.06 3.20 6.65 22.59 0.15 3.35 16 12 O -0.24 -15.16 9.76 -23.11 -0.23 -15.38 16 13 C -0.41 -24.45 9.48 67.91 0.64 -23.80 16 14 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 15 C -0.03 -1.70 5.49 84.82 0.47 -1.24 16 16 N -0.93 -58.83 13.67 21.61 0.30 -58.54 16 17 Si 1.02 44.24 29.55 68.60 2.03 46.26 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 C -0.16 -6.92 9.98 22.37 0.22 -6.70 16 22 C -0.15 -5.14 8.89 22.39 0.20 -4.94 16 23 C -0.13 -2.55 5.63 30.64 0.17 -2.38 16 24 C 0.06 1.03 5.46 86.33 0.47 1.50 16 25 N -0.55 -8.53 4.75 -897.17 -4.26 -12.79 16 26 C 0.02 0.25 9.05 127.69 1.16 1.40 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.63 6.32 -2.39 -0.02 0.61 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.40 7.93 8.62 -92.71 -0.80 7.13 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.12 5.40 5.63 -2.91 -0.02 5.38 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.11 4.89 8.06 -2.92 -0.02 4.86 16 37 H 0.14 4.06 6.10 -2.91 -0.02 4.04 16 38 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.06 1.35 7.74 -2.39 -0.02 1.33 16 40 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 42 H 0.08 0.83 6.21 -2.39 -0.01 0.81 16 43 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 44 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -71.83 346.94 1.51 -70.32 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.20 Total: 27.93 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 5.15 Total: -38.78 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -5.64 Total: -90.35 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.23 Total: -15.38 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.83 1.51 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155810801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.863 kcal (2) G-P(sol) polarization free energy of solvation -71.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds