Wall clock time and date at job start Tue Mar 31 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46374 * 2 1 4 4 C 1.53037 * 109.46552 * 119.98111 * 2 1 3 5 5 C 1.53117 * 109.27995 * 179.19084 * 4 2 1 6 6 H 1.09000 * 109.51930 * 62.25493 * 5 4 2 7 7 N 1.46498 * 109.52240 * 182.43937 * 5 4 2 8 8 C 1.39786 * 120.00162 * 204.68432 * 7 5 4 9 9 C 1.38954 * 120.00227 * 359.73213 * 8 7 5 10 10 C 1.38015 * 119.98865 * 179.71982 * 9 8 7 11 11 C 1.38899 * 120.00332 * 0.55264 * 10 9 8 12 12 O 1.35799 * 119.98924 * 179.70028 * 11 10 9 13 13 C 1.34807 * 116.99978 * 174.47489 * 12 11 10 14 14 H 1.07998 * 120.00012 * 5.06520 * 13 12 11 15 15 C 1.38622 * 120.00182 * 185.05473 * 13 12 11 16 16 N 1.31588 * 119.99956 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99767 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47342 * 89.99685 * 17 15 13 19 19 H 1.48503 * 109.46901 * 209.99547 * 17 15 13 20 20 H 1.48495 * 109.47407 * 329.99222 * 17 15 13 21 21 C 1.38891 * 120.01812 * 359.71893 * 11 10 9 22 22 C 1.38012 * 120.00356 * 0.02562 * 21 11 10 23 23 C 1.53111 * 109.16238 * 302.34890 * 5 4 2 24 24 C 1.53038 * 109.28104 * 57.65009 * 23 5 4 25 25 N 1.46843 * 109.45914 * 240.03390 * 2 1 3 26 26 C 1.46899 * 111.00239 * 54.14650 * 25 2 1 27 27 H 1.09005 * 109.46871 * 300.02235 * 1 2 3 28 28 H 1.08997 * 109.47586 * 60.01556 * 1 2 3 29 29 H 1.09001 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.50265 * 59.25142 * 4 2 1 31 31 H 1.09002 * 109.49954 * 299.13938 * 4 2 1 32 32 H 0.97004 * 120.00136 * 24.68302 * 7 5 4 33 33 H 1.07991 * 120.00113 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.99672 * 180.29387 * 10 9 8 35 35 H 0.96996 * 119.99683 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.00288 * 180.02562 * 21 11 10 37 37 H 1.08002 * 120.00485 * 179.97438 * 22 21 11 38 38 H 1.08999 * 109.50377 * 297.71088 * 23 5 4 39 39 H 1.08999 * 109.53408 * 177.61521 * 23 5 4 40 40 H 1.09005 * 109.45544 * 60.83975 * 24 23 5 41 41 H 1.09002 * 109.46403 * 180.80437 * 24 23 5 42 42 H 1.09004 * 109.47636 * 180.25353 * 26 25 2 43 43 H 1.09000 * 109.46937 * 300.25253 * 26 25 2 44 44 H 1.09001 * 109.47237 * 60.25548 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2498 5 6 3.5710 -0.7363 1.2354 6 1 3.9457 0.2868 1.2672 7 7 4.0642 -1.4759 2.3997 8 6 5.3420 -1.2156 2.9033 9 6 6.1465 -0.2591 2.2961 10 6 7.4058 0.0019 2.7970 11 6 7.8733 -0.6996 3.9009 12 8 9.1147 -0.4469 4.3898 13 6 9.4640 -1.0777 5.5289 14 1 8.8012 -1.8101 5.9656 15 6 10.6740 -0.7866 6.1394 16 7 11.0151 -1.4027 7.2510 17 14 11.8202 0.4804 5.3842 18 1 11.5037 1.8236 5.9328 19 1 13.2266 0.1317 5.7094 20 1 11.6416 0.4931 3.9101 21 6 7.0715 -1.6597 4.5046 22 6 5.8101 -1.9174 4.0074 23 6 4.0547 -1.4188 -0.0470 24 6 3.4863 -0.6775 -1.2593 25 7 2.0192 -0.6916 -1.1995 26 6 1.4372 -0.1102 -2.4166 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5136 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6659 -1.7449 1.2574 31 1 1.6895 -0.1984 2.1399 32 1 3.5041 -2.1464 2.8213 33 1 5.7848 0.2829 1.4349 34 1 8.0293 0.7487 2.3281 35 1 11.8616 -1.1987 7.6783 36 1 7.4350 -2.2047 5.3632 37 1 5.1868 -2.6642 4.4765 38 1 3.7124 -2.4536 -0.0599 39 1 5.1438 -1.3953 -0.0838 40 1 3.8403 0.3534 -1.2532 41 1 3.8173 -1.1696 -2.1739 42 1 1.8128 -0.6439 -3.2897 43 1 0.3514 -0.1968 -2.3772 44 1 1.7157 0.9413 -2.4860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155811158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:18 Heat of formation + Delta-G solvation = 6.512801 kcal Electronic energy + Delta-G solvation = -22809.299657 eV Core-core repulsion = 19534.144775 eV Total energy + Delta-G solvation = -3275.154882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.88467 -38.95537 -37.16732 -34.97594 -32.69136 -32.31504 -31.59337 -30.19022 -28.06067 -26.93145 -26.07055 -24.72841 -23.24977 -22.17509 -21.49102 -20.32243 -19.93771 -17.69896 -17.32510 -16.50716 -16.01785 -15.75154 -15.36458 -14.80258 -14.50966 -14.36782 -13.98494 -13.66000 -13.59487 -13.37440 -13.01051 -12.72423 -12.49049 -12.34410 -12.24150 -12.18822 -12.08040 -12.03388 -11.71114 -11.58684 -11.25341 -11.07261 -10.94820 -10.68063 -10.52564 -10.51170 -10.08021 -9.27044 -9.19192 -8.60908 -8.52452 -8.23098 -6.47778 -6.29112 -3.93412 2.13510 2.49247 3.29049 3.32497 3.47919 3.58701 3.72571 4.33857 4.50086 4.58857 4.65674 4.70418 4.89398 5.01534 5.03355 5.12974 5.15557 5.21600 5.26057 5.28666 5.32917 5.44367 5.51544 5.54810 5.60643 5.63809 5.69460 5.77476 5.83914 5.90153 6.01207 6.13999 6.17625 6.27095 6.46243 6.78515 6.80949 6.83120 6.85304 7.02900 7.36838 7.50884 7.81661 7.95428 8.12731 8.24375 9.07608 9.74033 10.79552 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.002854 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.373522 B = 9807.872930 C =10208.102405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 H 0.041 0.959 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.070 0.930 7 N -0.753 5.753 8 C 0.135 3.865 9 C -0.151 4.151 10 C -0.149 4.149 11 C 0.116 3.884 12 O -0.228 6.228 13 C -0.383 4.383 14 H 0.103 0.897 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.175 4.175 22 C -0.144 4.144 23 C -0.133 4.133 24 C 0.057 3.943 25 N -0.539 5.539 26 C 0.021 3.979 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.391 0.609 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.277 0.723 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.864 2.333 -16.290 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.156 4.156 5 C 0.053 3.947 6 H 0.088 0.912 7 N -0.387 5.387 8 C 0.037 3.963 9 C -0.173 4.173 10 C -0.169 4.169 11 C 0.065 3.935 12 O -0.135 6.135 13 C -0.460 4.460 14 H 0.120 0.880 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.195 4.195 22 C -0.167 4.167 23 C -0.172 4.172 24 C -0.071 4.071 25 N -0.264 5.264 26 C -0.127 4.127 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.225 0.775 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.648 2.096 -16.300 25.615 hybrid contribution 0.611 0.962 -0.008 1.140 sum -19.036 3.058 -16.307 25.252 Atomic orbital electron populations 1.21918 0.94172 1.02663 1.01781 1.21560 0.95420 0.95407 0.90060 0.94063 1.21884 0.94936 1.01875 0.96863 1.20712 0.92822 0.95645 0.85483 0.91181 1.44298 1.15141 1.45563 1.33669 1.17453 0.85987 0.97647 0.95238 1.20177 0.94423 1.00863 1.01869 1.20010 0.96225 1.02565 0.98113 1.18956 0.85665 0.94784 0.94076 1.83572 1.26230 1.63905 1.39797 1.20704 1.05307 1.21309 0.98640 0.87961 1.24426 0.96926 0.97863 0.95045 1.69667 1.23676 1.42110 1.17339 0.86184 0.78966 0.80995 0.80730 1.20100 1.21028 1.18470 1.21108 0.94486 1.01028 1.02854 1.20292 0.96717 1.02064 0.97587 1.22132 1.00884 1.00568 0.93658 1.22088 0.86748 0.99034 0.99223 1.61972 1.07461 1.54958 1.02040 1.22421 1.00648 0.97200 0.92440 0.92070 0.92415 0.91678 0.90708 0.90981 0.77514 0.87067 0.86654 0.91335 0.84920 0.87359 0.90977 0.90842 0.94874 0.90628 0.91485 0.90972 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.77 37.16 0.33 -0.69 16 2 C 0.08 0.71 2.44 -67.73 -0.17 0.54 16 3 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -1.07 4.84 -26.65 -0.13 -1.19 16 5 C 0.16 1.76 2.20 -67.81 -0.15 1.61 16 6 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 7 N -0.75 -9.71 5.26 -52.00 -0.27 -9.99 16 8 C 0.14 2.24 6.64 -83.70 -0.56 1.69 16 9 C -0.15 -2.61 8.85 -39.40 -0.35 -2.96 16 10 C -0.15 -3.01 9.98 -39.42 -0.39 -3.40 16 11 C 0.12 2.73 6.65 -39.09 -0.26 2.47 16 12 O -0.23 -6.18 8.58 -0.04 0.00 -6.18 16 13 C -0.38 -11.06 9.94 30.87 0.31 -10.76 16 14 H 0.10 3.00 5.43 -52.49 -0.28 2.72 16 15 C 0.06 1.70 5.49 -17.51 -0.10 1.60 16 16 N -0.89 -26.31 13.97 55.48 0.77 -25.54 16 17 Si 0.91 22.27 28.62 -169.99 -4.86 17.41 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.18 -3.83 9.16 -39.42 -0.36 -4.19 16 22 C -0.14 -2.63 9.89 -39.40 -0.39 -3.02 16 23 C -0.13 -1.41 5.61 -26.65 -0.15 -1.56 16 24 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 25 N -0.54 -4.75 4.75 -234.93 -1.11 -5.87 16 26 C 0.02 0.15 9.06 60.06 0.54 0.69 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.35 6.32 -51.93 -0.33 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.39 4.50 8.61 -40.82 -0.35 4.15 16 33 H 0.11 1.65 6.05 -52.49 -0.32 1.33 16 34 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.13 3.06 5.63 -52.49 -0.30 2.76 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.87 7.66 -51.93 -0.40 0.48 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.07 0.45 6.20 -51.93 -0.32 0.13 16 44 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -30.20 345.64 -8.95 -39.15 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.84 Total: 4.46 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.84 Total: -18.65 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.61 Total: -41.39 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.00 Total: -6.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.20 -8.95 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155811158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.660 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds