Wall clock time and date at job start Tue Mar 31 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46374 * 2 1 4 4 C 1.53037 * 109.46552 * 119.98111 * 2 1 3 5 5 C 1.53117 * 109.27995 * 179.19084 * 4 2 1 6 6 H 1.09000 * 109.51930 * 62.25493 * 5 4 2 7 7 N 1.46498 * 109.52240 * 182.43937 * 5 4 2 8 8 C 1.39786 * 120.00162 * 204.68432 * 7 5 4 9 9 C 1.38954 * 120.00227 * 359.73213 * 8 7 5 10 10 C 1.38015 * 119.98865 * 179.71982 * 9 8 7 11 11 C 1.38899 * 120.00332 * 0.55264 * 10 9 8 12 12 O 1.35799 * 119.98924 * 179.70028 * 11 10 9 13 13 C 1.34807 * 116.99978 * 174.47489 * 12 11 10 14 14 H 1.07998 * 120.00012 * 5.06520 * 13 12 11 15 15 C 1.38622 * 120.00182 * 185.05473 * 13 12 11 16 16 N 1.31588 * 119.99956 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99767 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47342 * 89.99685 * 17 15 13 19 19 H 1.48503 * 109.46901 * 209.99547 * 17 15 13 20 20 H 1.48495 * 109.47407 * 329.99222 * 17 15 13 21 21 C 1.38891 * 120.01812 * 359.71893 * 11 10 9 22 22 C 1.38012 * 120.00356 * 0.02562 * 21 11 10 23 23 C 1.53111 * 109.16238 * 302.34890 * 5 4 2 24 24 C 1.53038 * 109.28104 * 57.65009 * 23 5 4 25 25 N 1.46843 * 109.45914 * 240.03390 * 2 1 3 26 26 C 1.46899 * 111.00239 * 54.14650 * 25 2 1 27 27 H 1.09005 * 109.46871 * 300.02235 * 1 2 3 28 28 H 1.08997 * 109.47586 * 60.01556 * 1 2 3 29 29 H 1.09001 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.50265 * 59.25142 * 4 2 1 31 31 H 1.09002 * 109.49954 * 299.13938 * 4 2 1 32 32 H 0.97004 * 120.00136 * 24.68302 * 7 5 4 33 33 H 1.07991 * 120.00113 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.99672 * 180.29387 * 10 9 8 35 35 H 0.96996 * 119.99683 * 180.02562 * 16 15 13 36 36 H 1.07998 * 120.00288 * 180.02562 * 21 11 10 37 37 H 1.08002 * 120.00485 * 179.97438 * 22 21 11 38 38 H 1.08999 * 109.50377 * 297.71088 * 23 5 4 39 39 H 1.08999 * 109.53408 * 177.61521 * 23 5 4 40 40 H 1.09005 * 109.45544 * 60.83975 * 24 23 5 41 41 H 1.09002 * 109.46403 * 180.80437 * 24 23 5 42 42 H 1.09004 * 109.47636 * 180.25353 * 26 25 2 43 43 H 1.09000 * 109.46937 * 300.25253 * 26 25 2 44 44 H 1.09001 * 109.47237 * 60.25548 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2498 5 6 3.5710 -0.7363 1.2354 6 1 3.9457 0.2868 1.2672 7 7 4.0642 -1.4759 2.3997 8 6 5.3420 -1.2156 2.9033 9 6 6.1465 -0.2591 2.2961 10 6 7.4058 0.0019 2.7970 11 6 7.8733 -0.6996 3.9009 12 8 9.1147 -0.4469 4.3898 13 6 9.4640 -1.0777 5.5289 14 1 8.8012 -1.8101 5.9656 15 6 10.6740 -0.7866 6.1394 16 7 11.0151 -1.4027 7.2510 17 14 11.8202 0.4804 5.3842 18 1 11.5037 1.8236 5.9328 19 1 13.2266 0.1317 5.7094 20 1 11.6416 0.4931 3.9101 21 6 7.0715 -1.6597 4.5046 22 6 5.8101 -1.9174 4.0074 23 6 4.0547 -1.4188 -0.0470 24 6 3.4863 -0.6775 -1.2593 25 7 2.0192 -0.6916 -1.1995 26 6 1.4372 -0.1102 -2.4166 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5136 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6659 -1.7449 1.2574 31 1 1.6895 -0.1984 2.1399 32 1 3.5041 -2.1464 2.8213 33 1 5.7848 0.2829 1.4349 34 1 8.0293 0.7487 2.3281 35 1 11.8616 -1.1987 7.6783 36 1 7.4350 -2.2047 5.3632 37 1 5.1868 -2.6642 4.4765 38 1 3.7124 -2.4536 -0.0599 39 1 5.1438 -1.3953 -0.0838 40 1 3.8403 0.3534 -1.2532 41 1 3.8173 -1.1696 -2.1739 42 1 1.8128 -0.6439 -3.2897 43 1 0.3514 -0.1968 -2.3772 44 1 1.7157 0.9413 -2.4860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155811158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:17 Heat of formation + Delta-G solvation = -12.827270 kcal Electronic energy + Delta-G solvation = -22810.138305 eV Core-core repulsion = 19534.144775 eV Total energy + Delta-G solvation = -3275.993531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.00239 -40.31574 -38.66934 -36.19156 -34.35097 -33.36088 -32.78610 -31.73085 -29.27600 -27.89965 -27.19311 -26.31064 -24.26082 -23.42337 -22.69813 -21.62347 -20.74224 -19.60793 -19.08088 -17.84097 -17.04268 -16.60167 -16.41296 -16.03525 -15.67134 -15.57719 -15.39855 -15.30837 -15.00842 -14.47433 -14.30638 -14.02241 -13.89897 -13.74092 -13.41505 -13.16341 -13.08724 -12.90425 -12.77865 -12.72919 -12.52598 -12.37860 -11.99590 -11.93385 -11.78180 -11.67045 -11.30438 -11.18549 -10.94223 -10.25650 -9.79944 -9.25616 -8.43020 -7.97606 -6.10669 0.56116 0.88800 1.33407 1.38176 1.54965 2.33133 2.58039 2.84889 2.96264 3.17303 3.29976 3.75532 3.91084 3.97143 4.09750 4.13308 4.19108 4.33644 4.42260 4.51416 4.52675 4.57114 4.58043 4.66138 4.71195 4.82442 4.88975 4.91800 4.92927 5.01304 5.08954 5.10259 5.21417 5.22806 5.24386 5.34478 5.43742 5.49614 5.63330 5.84062 5.86758 6.14602 6.15708 6.18391 6.61370 6.92784 7.02458 7.73315 8.69437 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.002854 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.373522 B = 9807.872930 C =10208.102405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.038 0.962 4 C -0.110 4.110 5 C 0.157 3.843 6 H 0.067 0.933 7 N -0.740 5.740 8 C 0.164 3.836 9 C -0.148 4.148 10 C -0.142 4.142 11 C 0.066 3.934 12 O -0.255 6.255 13 C -0.391 4.391 14 H 0.078 0.922 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.263 1.263 21 C -0.186 4.186 22 C -0.151 4.151 23 C -0.127 4.127 24 C 0.060 3.940 25 N -0.548 5.548 26 C 0.020 3.980 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.282 0.718 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.244 3.378 -18.793 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.056 0.944 4 C -0.148 4.148 5 C 0.051 3.949 6 H 0.085 0.915 7 N -0.372 5.372 8 C 0.063 3.937 9 C -0.171 4.171 10 C -0.161 4.161 11 C 0.018 3.982 12 O -0.164 6.164 13 C -0.467 4.467 14 H 0.095 0.905 15 C -0.193 4.193 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.188 1.188 21 C -0.206 4.206 22 C -0.173 4.173 23 C -0.167 4.167 24 C -0.068 4.068 25 N -0.273 5.273 26 C -0.127 4.127 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -22.110 3.128 -18.844 29.219 hybrid contribution 0.974 0.569 0.585 1.270 sum -21.137 3.696 -18.259 28.175 Atomic orbital electron populations 1.21884 0.92877 1.02756 1.02592 1.21585 0.96437 0.94950 0.89537 0.94408 1.21825 0.93100 1.02257 0.97649 1.20893 0.94309 0.95055 0.84637 0.91504 1.44428 1.13586 1.45394 1.33793 1.17556 0.86995 0.95608 0.93582 1.20476 0.93246 1.00868 1.02465 1.20277 0.97289 1.01908 0.96672 1.19443 0.85502 0.97138 0.96165 1.83500 1.28448 1.64942 1.39474 1.20675 1.05347 1.21137 0.99581 0.90475 1.25259 0.98464 1.00037 0.95583 1.69755 1.24664 1.44078 1.18877 0.85196 0.77364 0.78562 0.79439 1.19223 1.19434 1.18770 1.21069 0.96048 1.00980 1.02498 1.20464 0.95626 1.02971 0.98284 1.22036 1.00110 1.00449 0.94074 1.22034 0.87232 0.98849 0.98695 1.61988 1.07079 1.55446 1.02814 1.22468 1.01173 0.97248 0.91837 0.91368 0.91598 0.91896 0.90518 0.90455 0.76244 0.83894 0.85474 0.90863 0.87464 0.84835 0.91467 0.92060 0.94824 0.89980 0.90996 0.90033 0.95628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.77 71.98 0.63 -0.88 16 2 C 0.08 1.15 2.44 44.94 0.11 1.26 16 3 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.11 -1.63 4.84 30.65 0.15 -1.48 16 5 C 0.16 2.93 2.20 45.07 0.10 3.02 16 6 H 0.07 1.35 6.51 -2.39 -0.02 1.34 16 7 N -0.74 -16.65 5.26 -318.44 -1.67 -18.33 16 8 C 0.16 5.04 6.64 38.21 0.25 5.30 16 9 C -0.15 -4.75 8.85 22.39 0.20 -4.55 16 10 C -0.14 -5.59 9.98 22.38 0.22 -5.37 16 11 C 0.07 3.19 6.65 22.58 0.15 3.34 16 12 O -0.25 -14.31 8.58 -23.04 -0.20 -14.51 16 13 C -0.39 -23.76 9.94 67.91 0.68 -23.08 16 14 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 15 C 0.00 0.20 5.49 84.82 0.47 0.67 16 16 N -0.93 -57.32 13.97 21.61 0.30 -57.02 16 17 Si 0.97 46.97 28.62 68.60 1.96 48.93 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.19 -8.43 9.16 22.37 0.20 -8.23 16 22 C -0.15 -5.37 9.89 22.39 0.22 -5.14 16 23 C -0.13 -2.35 5.61 30.64 0.17 -2.18 16 24 C 0.06 0.94 5.46 86.33 0.47 1.41 16 25 N -0.55 -8.01 4.75 -897.18 -4.26 -12.26 16 26 C 0.02 0.23 9.06 127.69 1.16 1.39 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.60 6.32 -2.39 -0.02 0.58 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.40 7.82 8.61 -92.70 -0.80 7.02 16 33 H 0.14 3.69 6.05 -2.92 -0.02 3.68 16 34 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.11 5.34 5.63 -2.91 -0.02 5.32 16 37 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.29 7.66 -2.39 -0.02 1.27 16 40 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.08 1.18 8.09 -2.39 -0.02 1.17 16 42 H 0.07 0.74 8.10 -2.39 -0.02 0.72 16 43 H 0.08 0.77 6.20 -2.39 -0.01 0.75 16 44 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -67.78 345.64 1.51 -66.27 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.20 Total: 21.46 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 5.18 Total: -34.53 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -5.63 Total: -87.61 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.20 Total: -14.51 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.96 Total: 48.93 kcal Total: -67.78 1.51 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155811158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.444 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds