Wall clock time and date at job start Tue Mar 31 2020 07:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.45949 * 2 1 4 4 C 1.53029 * 109.46514 * 240.03260 * 2 1 3 5 5 C 1.53117 * 109.28132 * 180.80604 * 4 2 1 6 6 H 1.08996 * 109.57286 * 297.71241 * 5 4 2 7 7 N 1.46504 * 109.52346 * 177.55558 * 5 4 2 8 8 C 1.39668 * 120.00178 * 155.31639 * 7 5 4 9 9 C 1.39013 * 120.04000 * 359.97438 * 8 7 5 10 10 C 1.38149 * 120.06386 * 180.02562 * 9 8 7 11 11 C 1.38165 * 120.14344 * 359.97438 * 10 9 8 12 12 C 1.38924 * 120.07854 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.02933 * 179.97438 * 12 11 10 14 14 C 1.34830 * 116.99726 * 185.51954 * 13 12 11 15 15 H 1.08004 * 120.00296 * 354.92047 * 14 13 12 16 16 C 1.38653 * 119.99883 * 174.92321 * 14 13 12 17 17 N 1.31562 * 119.99911 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00201 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47309 * 270.00013 * 18 16 14 20 20 H 1.48500 * 109.47297 * 149.99865 * 18 16 14 21 21 H 1.48508 * 109.46873 * 30.00201 * 18 16 14 22 22 C 1.38751 * 120.04402 * 180.25695 * 8 7 5 23 23 C 1.53114 * 109.16024 * 57.65084 * 5 4 2 24 24 C 1.53034 * 109.28083 * 302.34482 * 23 5 4 25 25 N 1.46842 * 109.52018 * 59.18071 * 24 23 5 26 26 C 1.46905 * 111.00065 * 174.16119 * 25 24 23 27 27 H 1.09000 * 109.47311 * 300.02344 * 1 2 3 28 28 H 1.09003 * 109.47349 * 60.02213 * 1 2 3 29 29 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.50759 * 60.85968 * 4 2 1 31 31 H 1.09008 * 109.49937 * 300.74307 * 4 2 1 32 32 H 0.97001 * 119.99812 * 335.31431 * 7 5 4 33 33 H 1.08007 * 119.96525 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.92740 * 179.97438 * 10 9 8 35 35 H 1.07997 * 119.96225 * 179.97438 * 11 10 9 36 36 H 0.97003 * 119.99987 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.06576 * 0.02562 * 22 8 7 38 38 H 1.09006 * 109.50310 * 62.29143 * 23 5 4 39 39 H 1.09010 * 109.50343 * 182.40238 * 23 5 4 40 40 H 1.09000 * 109.46682 * 179.19479 * 24 23 5 41 41 H 1.08999 * 109.46166 * 299.17587 * 24 23 5 42 42 H 1.09002 * 109.46949 * 56.04868 * 26 25 24 43 43 H 1.08997 * 109.47043 * 176.04227 * 26 25 24 44 44 H 1.08998 * 109.47137 * 296.04560 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2499 5 6 3.5709 -0.7359 -1.2356 6 1 3.9465 0.2868 -1.2677 7 7 4.0642 -1.4754 -2.4001 8 6 5.3408 -1.2152 -2.9032 9 6 6.1440 -0.2542 -2.3000 10 6 7.4066 0.0040 -2.7976 11 6 7.8754 -0.6918 -3.8953 12 6 7.0778 -1.6534 -4.5028 13 8 7.5392 -2.3361 -5.5816 14 6 6.6752 -3.1716 -6.1926 15 1 5.6942 -3.3362 -5.7720 16 6 7.0462 -3.8195 -7.3609 17 7 6.2033 -4.6352 -7.9569 18 14 8.7427 -3.5344 -8.0889 19 1 8.6899 -2.3901 -9.0340 20 1 9.1822 -4.7543 -8.8127 21 1 9.7046 -3.2320 -6.9987 22 6 5.8068 -1.9113 -4.0093 23 6 4.0547 -1.4187 0.0467 24 6 3.4865 -0.6777 1.2591 25 7 2.0193 -0.6917 1.1994 26 6 1.4373 -0.1106 2.4166 27 1 -0.3634 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6895 -0.1980 -2.1399 31 1 1.6659 -1.7446 -1.2576 32 1 3.5041 -2.1459 -2.8217 33 1 5.7805 0.2911 -1.4415 34 1 8.0286 0.7514 -2.3275 35 1 8.8628 -0.4873 -4.2821 36 1 6.4627 -5.0882 -8.7744 37 1 5.1829 -2.6549 -4.4829 38 1 3.7124 -2.4535 0.0593 39 1 5.1439 -1.3946 0.0831 40 1 3.8174 -1.1699 2.1736 41 1 3.8402 0.3533 1.2531 42 1 1.8277 0.8968 2.5608 43 1 0.3527 -0.0690 2.3166 44 1 1.6995 -0.7284 3.2754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155939773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:22 Heat of formation + Delta-G solvation = 4.709161 kcal Electronic energy + Delta-G solvation = -23002.949424 eV Core-core repulsion = 19727.716330 eV Total energy + Delta-G solvation = -3275.233094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.86034 -38.96139 -37.10881 -35.09627 -32.64856 -32.36346 -31.92580 -29.14920 -28.39654 -27.05487 -25.94216 -25.13245 -23.12652 -21.80144 -21.69774 -20.23457 -19.84561 -17.81357 -17.46452 -16.19270 -15.74756 -15.58720 -15.28927 -14.84652 -14.71356 -14.47323 -13.99766 -13.74622 -13.70482 -13.36063 -13.03073 -12.85010 -12.42666 -12.30290 -12.19534 -12.12865 -12.06017 -12.01305 -11.65798 -11.27903 -11.17672 -10.95485 -10.80085 -10.65865 -10.52501 -10.46444 -10.15196 -9.40760 -9.37023 -8.77808 -8.56359 -7.43711 -6.80698 -6.35653 -4.02298 2.32740 2.49719 3.26284 3.29885 3.45248 3.62526 3.73105 4.29292 4.54516 4.62859 4.68992 4.74444 4.92732 4.97358 5.05484 5.15835 5.18755 5.19997 5.30630 5.32367 5.36196 5.48494 5.54556 5.58572 5.66865 5.69043 5.83050 5.88790 5.92874 5.95630 6.07156 6.17505 6.26922 6.36686 6.55007 6.62139 6.83584 6.87314 7.00664 7.25975 7.31196 7.56618 7.85255 7.96759 8.10211 8.23997 9.00583 9.65418 10.72326 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.003206 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.380997 B = 8730.625848 C = 9369.468407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 H 0.041 0.959 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.073 0.927 7 N -0.747 5.747 8 C 0.251 3.749 9 C -0.274 4.274 10 C -0.041 4.041 11 C -0.239 4.239 12 C 0.196 3.804 13 O -0.219 6.219 14 C -0.386 4.386 15 H 0.105 0.895 16 C 0.062 3.938 17 N -0.883 5.883 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.291 4.291 23 C -0.133 4.133 24 C 0.059 3.941 25 N -0.539 5.539 26 C 0.019 3.981 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.396 0.604 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.278 0.722 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 9.748 17.881 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.051 3.949 6 H 0.091 0.909 7 N -0.377 5.377 8 C 0.150 3.850 9 C -0.297 4.297 10 C -0.060 4.060 11 C -0.260 4.260 12 C 0.143 3.857 13 O -0.123 6.123 14 C -0.462 4.462 15 H 0.123 0.877 16 C -0.141 4.141 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.315 4.315 23 C -0.172 4.172 24 C -0.069 4.069 25 N -0.264 5.264 26 C -0.129 4.129 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.230 0.770 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.888 9.220 17.681 21.832 hybrid contribution 0.573 0.512 -0.478 0.905 sum -8.314 9.733 17.203 21.443 Atomic orbital electron populations 1.21942 0.94143 1.02780 1.01764 1.21544 0.95444 0.95350 0.90024 0.94101 1.21900 0.94785 1.02112 0.96949 1.20785 0.92978 0.95736 0.85360 0.90890 1.44619 1.15231 1.44759 1.33095 1.17487 0.84215 0.92248 0.91085 1.20151 0.96929 1.06341 1.06240 1.20364 0.94516 0.96870 0.94251 1.20015 1.01409 1.02647 1.01882 1.18800 0.91026 0.89183 0.86662 1.83581 1.39865 1.51244 1.37646 1.20757 0.97637 1.20758 1.06999 0.87727 1.24460 0.99231 0.95220 0.95164 1.69652 1.35549 1.27936 1.19039 0.86190 0.83477 0.77706 0.79583 1.19957 1.20899 1.18330 1.20618 0.99180 1.09429 1.02251 1.22124 1.00912 1.00655 0.93517 1.22070 0.86757 0.98940 0.99161 1.61966 1.07450 1.54982 1.02042 1.22459 1.00578 0.97376 0.92493 0.92351 0.92001 0.91593 0.90849 0.90534 0.76959 0.87718 0.87147 0.87003 0.91186 0.85216 0.90863 0.90758 0.90624 0.94913 0.95827 0.90818 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.79 37.16 0.33 -0.81 16 2 C 0.09 0.78 2.44 -67.73 -0.17 0.62 16 3 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -1.23 4.84 -26.66 -0.13 -1.36 16 5 C 0.16 1.91 2.21 -67.81 -0.15 1.76 16 6 H 0.07 0.93 6.49 -51.93 -0.34 0.59 16 7 N -0.75 -11.23 5.25 -52.07 -0.27 -11.50 16 8 C 0.25 4.65 6.63 -83.81 -0.56 4.10 16 9 C -0.27 -4.73 8.87 -39.33 -0.35 -5.08 16 10 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 11 C -0.24 -4.93 9.99 -39.35 -0.39 -5.32 16 12 C 0.20 4.68 6.65 -39.13 -0.26 4.42 16 13 O -0.22 -5.92 8.58 0.05 0.00 -5.92 16 14 C -0.39 -11.08 9.94 30.89 0.31 -10.77 16 15 H 0.11 3.07 5.43 -52.48 -0.29 2.79 16 16 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 17 N -0.88 -25.87 13.96 55.48 0.77 -25.10 16 18 Si 0.90 22.07 28.62 -169.99 -4.86 17.20 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.29 -6.44 9.01 -39.20 -0.35 -6.79 16 23 C -0.13 -1.53 5.61 -26.65 -0.15 -1.68 16 24 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 25 N -0.54 -5.10 4.75 -234.93 -1.12 -6.22 16 26 C 0.02 0.14 9.30 60.07 0.56 0.70 16 27 H 0.06 0.39 6.15 -51.93 -0.32 0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.40 5.76 8.61 -40.82 -0.35 5.41 16 33 H 0.10 1.57 6.07 -52.48 -0.32 1.25 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.13 3.03 5.63 -52.49 -0.30 2.73 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.93 7.69 -51.92 -0.40 0.53 16 40 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.49 5.75 -51.93 -0.30 0.19 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -29.98 345.42 -8.91 -38.89 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.81 Total: 6.56 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.83 Total: -19.12 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.61 Total: -42.82 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: 0.00 Total: -5.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.98 -8.91 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155939773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.599 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds