Wall clock time and date at job start Tue Mar 31 2020 07:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.45949 * 2 1 4 4 C 1.53029 * 109.46514 * 240.03260 * 2 1 3 5 5 C 1.53117 * 109.28132 * 180.80604 * 4 2 1 6 6 H 1.08996 * 109.57286 * 297.71241 * 5 4 2 7 7 N 1.46504 * 109.52346 * 177.55558 * 5 4 2 8 8 C 1.39668 * 120.00178 * 155.31639 * 7 5 4 9 9 C 1.39013 * 120.04000 * 359.97438 * 8 7 5 10 10 C 1.38149 * 120.06386 * 180.02562 * 9 8 7 11 11 C 1.38165 * 120.14344 * 359.97438 * 10 9 8 12 12 C 1.38924 * 120.07854 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.02933 * 179.97438 * 12 11 10 14 14 C 1.34830 * 116.99726 * 185.51954 * 13 12 11 15 15 H 1.08004 * 120.00296 * 354.92047 * 14 13 12 16 16 C 1.38653 * 119.99883 * 174.92321 * 14 13 12 17 17 N 1.31562 * 119.99911 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00201 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47309 * 270.00013 * 18 16 14 20 20 H 1.48500 * 109.47297 * 149.99865 * 18 16 14 21 21 H 1.48508 * 109.46873 * 30.00201 * 18 16 14 22 22 C 1.38751 * 120.04402 * 180.25695 * 8 7 5 23 23 C 1.53114 * 109.16024 * 57.65084 * 5 4 2 24 24 C 1.53034 * 109.28083 * 302.34482 * 23 5 4 25 25 N 1.46842 * 109.52018 * 59.18071 * 24 23 5 26 26 C 1.46905 * 111.00065 * 174.16119 * 25 24 23 27 27 H 1.09000 * 109.47311 * 300.02344 * 1 2 3 28 28 H 1.09003 * 109.47349 * 60.02213 * 1 2 3 29 29 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.50759 * 60.85968 * 4 2 1 31 31 H 1.09008 * 109.49937 * 300.74307 * 4 2 1 32 32 H 0.97001 * 119.99812 * 335.31431 * 7 5 4 33 33 H 1.08007 * 119.96525 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.92740 * 179.97438 * 10 9 8 35 35 H 1.07997 * 119.96225 * 179.97438 * 11 10 9 36 36 H 0.97003 * 119.99987 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.06576 * 0.02562 * 22 8 7 38 38 H 1.09006 * 109.50310 * 62.29143 * 23 5 4 39 39 H 1.09010 * 109.50343 * 182.40238 * 23 5 4 40 40 H 1.09000 * 109.46682 * 179.19479 * 24 23 5 41 41 H 1.08999 * 109.46166 * 299.17587 * 24 23 5 42 42 H 1.09002 * 109.46949 * 56.04868 * 26 25 24 43 43 H 1.08997 * 109.47043 * 176.04227 * 26 25 24 44 44 H 1.08998 * 109.47137 * 296.04560 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2499 5 6 3.5709 -0.7359 -1.2356 6 1 3.9465 0.2868 -1.2677 7 7 4.0642 -1.4754 -2.4001 8 6 5.3408 -1.2152 -2.9032 9 6 6.1440 -0.2542 -2.3000 10 6 7.4066 0.0040 -2.7976 11 6 7.8754 -0.6918 -3.8953 12 6 7.0778 -1.6534 -4.5028 13 8 7.5392 -2.3361 -5.5816 14 6 6.6752 -3.1716 -6.1926 15 1 5.6942 -3.3362 -5.7720 16 6 7.0462 -3.8195 -7.3609 17 7 6.2033 -4.6352 -7.9569 18 14 8.7427 -3.5344 -8.0889 19 1 8.6899 -2.3901 -9.0340 20 1 9.1822 -4.7543 -8.8127 21 1 9.7046 -3.2320 -6.9987 22 6 5.8068 -1.9113 -4.0093 23 6 4.0547 -1.4187 0.0467 24 6 3.4865 -0.6777 1.2591 25 7 2.0193 -0.6917 1.1994 26 6 1.4373 -0.1106 2.4166 27 1 -0.3634 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 -0.3633 -1.0277 0.0005 30 1 1.6895 -0.1980 -2.1399 31 1 1.6659 -1.7446 -1.2576 32 1 3.5041 -2.1459 -2.8217 33 1 5.7805 0.2911 -1.4415 34 1 8.0286 0.7514 -2.3275 35 1 8.8628 -0.4873 -4.2821 36 1 6.4627 -5.0882 -8.7744 37 1 5.1829 -2.6549 -4.4829 38 1 3.7124 -2.4535 0.0593 39 1 5.1439 -1.3946 0.0831 40 1 3.8174 -1.1699 2.1736 41 1 3.8402 0.3533 1.2531 42 1 1.8277 0.8968 2.5608 43 1 0.3527 -0.0690 2.3166 44 1 1.6995 -0.7284 3.2754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155939773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:21 Heat of formation + Delta-G solvation = -14.516549 kcal Electronic energy + Delta-G solvation = -23003.783113 eV Core-core repulsion = 19727.716330 eV Total energy + Delta-G solvation = -3276.066783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05772 -40.35527 -38.64652 -36.37349 -34.41246 -33.39322 -33.13092 -30.74266 -29.73168 -27.95053 -27.11224 -26.77034 -24.03342 -23.29137 -22.92227 -21.50482 -20.80204 -19.75397 -19.10347 -17.41648 -16.89885 -16.72647 -16.47780 -16.19068 -15.88622 -15.67331 -15.41337 -15.37037 -15.12007 -14.67584 -14.33907 -14.10946 -13.89334 -13.68077 -13.41371 -13.12306 -12.97634 -12.83438 -12.74440 -12.57237 -12.52801 -12.26795 -12.06200 -11.96528 -11.79072 -11.69272 -11.44649 -11.26825 -10.96434 -10.63274 -9.25628 -9.18097 -8.48406 -8.25595 -6.20844 0.73664 0.88199 1.31712 1.36687 1.53174 2.29554 2.47715 2.82748 2.94724 3.14860 3.25919 3.70140 3.87329 3.92862 4.08950 4.21705 4.29740 4.31413 4.44336 4.49083 4.50804 4.57386 4.59809 4.66785 4.74002 4.80000 4.87288 4.89951 4.93810 4.98559 5.02461 5.07177 5.14104 5.19811 5.28948 5.39926 5.45195 5.47138 5.75330 5.84757 5.90910 6.14839 6.17090 6.18303 6.59576 6.82018 6.86703 7.63731 8.63474 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.003206 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.380997 B = 8730.625848 C = 9369.468407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.044 0.956 4 C -0.114 4.114 5 C 0.156 3.844 6 H 0.077 0.923 7 N -0.742 5.742 8 C 0.255 3.745 9 C -0.258 4.258 10 C -0.026 4.026 11 C -0.251 4.251 12 C 0.160 3.840 13 O -0.245 6.245 14 C -0.396 4.396 15 H 0.078 0.922 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.313 4.313 23 C -0.127 4.127 24 C 0.064 3.936 25 N -0.552 5.552 26 C 0.019 3.981 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.396 0.604 33 H 0.139 0.861 34 H 0.157 0.843 35 H 0.121 0.879 36 H 0.284 0.716 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.082 0.918 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 12.188 20.352 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.062 0.938 4 C -0.153 4.153 5 C 0.051 3.949 6 H 0.095 0.905 7 N -0.370 5.370 8 C 0.151 3.849 9 C -0.280 4.280 10 C -0.045 4.045 11 C -0.272 4.272 12 C 0.110 3.890 13 O -0.153 6.153 14 C -0.472 4.472 15 H 0.096 0.904 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.337 4.337 23 C -0.166 4.166 24 C -0.065 4.065 25 N -0.277 5.277 26 C -0.129 4.129 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.100 0.900 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.709 11.683 20.210 24.916 hybrid contribution 0.335 -0.103 -0.947 1.010 sum -8.374 11.579 19.264 23.985 Atomic orbital electron populations 1.21914 0.92948 1.02673 1.02726 1.21534 0.96377 0.95035 0.89210 0.93834 1.21860 0.93309 1.02059 0.98027 1.21003 0.94226 0.95348 0.84307 0.90509 1.44827 1.13987 1.44584 1.33575 1.17587 0.85621 0.91750 0.89932 1.20599 0.96400 1.04841 1.06205 1.20875 0.94802 0.96280 0.92512 1.20308 1.01682 1.02332 1.02869 1.19394 0.92497 0.90520 0.86621 1.83522 1.39789 1.52481 1.39459 1.20690 0.97253 1.21665 1.07625 0.90434 1.25287 1.03188 0.95006 0.95459 1.69736 1.37540 1.29428 1.19980 0.85210 0.78482 0.78330 0.78636 1.19053 1.19175 1.18737 1.20575 0.98941 1.10146 1.04019 1.22030 1.00405 1.00151 0.94018 1.22012 0.87055 0.99037 0.98356 1.61959 1.07292 1.55644 1.02854 1.22505 1.01037 0.97632 0.91686 0.91051 0.91441 0.92220 0.90746 0.91197 0.76993 0.84299 0.82518 0.86057 0.90654 0.87981 0.92181 0.91541 0.89754 0.94183 0.95269 0.89960 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.79 71.98 0.63 -1.24 16 2 C 0.09 1.38 2.44 44.93 0.11 1.49 16 3 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 4 C -0.11 -2.18 4.84 30.64 0.15 -2.03 16 5 C 0.16 3.48 2.21 45.07 0.10 3.58 16 6 H 0.08 1.70 6.49 -2.39 -0.02 1.68 16 7 N -0.74 -21.87 5.25 -318.64 -1.67 -23.54 16 8 C 0.26 9.29 6.63 38.20 0.25 9.54 16 9 C -0.26 -8.09 8.87 22.43 0.20 -7.89 16 10 C -0.03 -0.83 10.03 22.23 0.22 -0.61 16 11 C -0.25 -10.10 9.99 22.42 0.22 -9.87 16 12 C 0.16 7.83 6.65 22.56 0.15 7.98 16 13 O -0.25 -13.86 8.58 -22.74 -0.20 -14.06 16 14 C -0.40 -24.11 9.94 67.92 0.68 -23.43 16 15 H 0.08 4.97 5.43 -2.91 -0.02 4.96 16 16 C 0.01 0.50 5.49 84.83 0.47 0.97 16 17 N -0.93 -56.54 13.96 21.61 0.30 -56.23 16 18 Si 0.97 46.65 28.62 68.60 1.96 48.62 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 22 C -0.31 -14.44 9.01 22.52 0.20 -14.23 16 23 C -0.13 -2.66 5.61 30.64 0.17 -2.49 16 24 C 0.06 1.06 5.46 86.33 0.47 1.53 16 25 N -0.55 -9.01 4.75 -897.20 -4.26 -13.27 16 26 C 0.02 0.23 9.30 127.69 1.19 1.42 16 27 H 0.07 0.74 6.15 -2.39 -0.01 0.73 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.40 11.77 8.61 -92.71 -0.80 10.97 16 33 H 0.14 3.47 6.07 -2.91 -0.02 3.45 16 34 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 36 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.10 5.21 5.63 -2.91 -0.02 5.20 16 38 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.50 7.69 -2.38 -0.02 1.48 16 40 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 41 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.08 0.85 5.75 -2.39 -0.01 0.84 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.08 345.42 1.55 -66.53 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.20 Total: 27.24 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 5.22 Total: -35.28 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -5.63 Total: -93.05 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.20 Total: -14.06 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.96 Total: 48.62 kcal Total: -68.08 1.55 -66.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155939773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.015 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds