Wall clock time and date at job start Tue Mar 31 2020 07:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.45240 * 2 1 4 4 C 1.53038 * 109.46148 * 240.01908 * 2 1 3 5 5 C 1.53121 * 109.27670 * 180.80413 * 4 2 1 6 6 H 1.08999 * 109.57737 * 177.59115 * 5 4 2 7 7 N 1.46496 * 109.52209 * 297.75493 * 5 4 2 8 8 C 1.39676 * 119.99772 * 204.68335 * 7 5 4 9 9 C 1.39010 * 120.03643 * 359.97438 * 8 7 5 10 10 C 1.38150 * 120.05981 * 180.02562 * 9 8 7 11 11 C 1.38176 * 120.14188 * 0.22930 * 10 9 8 12 12 C 1.38918 * 120.08063 * 359.49786 * 11 10 9 13 13 O 1.35749 * 120.03362 * 180.25554 * 12 11 10 14 14 C 1.34830 * 116.99867 * 174.73731 * 13 12 11 15 15 H 1.07996 * 120.00380 * 5.05042 * 14 13 12 16 16 C 1.38652 * 119.99840 * 185.05414 * 14 13 12 17 17 N 1.31564 * 119.99867 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46886 * 89.99894 * 18 16 14 20 20 H 1.48498 * 109.47387 * 209.99882 * 18 16 14 21 21 H 1.48503 * 109.46876 * 330.00152 * 18 16 14 22 22 C 1.38749 * 120.04314 * 180.02562 * 8 7 5 23 23 C 1.53123 * 109.15919 * 57.65601 * 5 4 2 24 24 C 1.53033 * 109.27829 * 302.34733 * 23 5 4 25 25 N 1.46845 * 109.45954 * 119.96651 * 2 1 3 26 26 C 1.46897 * 111.00613 * 305.85677 * 25 2 1 27 27 H 1.08998 * 109.47035 * 300.03553 * 1 2 3 28 28 H 1.09001 * 109.46989 * 60.03165 * 1 2 3 29 29 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49867 * 60.86477 * 4 2 1 31 31 H 1.08997 * 109.50537 * 300.75115 * 4 2 1 32 32 H 0.96998 * 120.00392 * 24.68187 * 7 5 4 33 33 H 1.07999 * 119.97350 * 0.02562 * 9 8 7 34 34 H 1.08000 * 119.93185 * 179.97438 * 10 9 8 35 35 H 1.08001 * 119.96140 * 179.74520 * 11 10 9 36 36 H 0.96998 * 120.00035 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.06883 * 359.97438 * 22 8 7 38 38 H 1.09001 * 109.50066 * 62.28701 * 23 5 4 39 39 H 1.08993 * 109.50375 * 182.39886 * 23 5 4 40 40 H 1.09001 * 109.46257 * 179.19629 * 24 23 5 41 41 H 1.09004 * 109.46278 * 299.17050 * 24 23 5 42 42 H 1.08998 * 109.46938 * 291.83907 * 26 25 2 43 43 H 1.09003 * 109.46818 * 51.83156 * 26 25 2 44 44 H 1.08995 * 109.47851 * 171.83741 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5710 -0.7362 -1.2355 6 1 3.9390 -1.2859 -2.1018 7 7 4.0746 0.6389 -1.2780 8 6 5.3513 0.8997 -1.7809 9 6 6.1449 -0.1449 -2.2407 10 6 7.4079 0.1125 -2.7376 11 6 7.8882 1.4076 -2.7750 12 6 7.0980 2.4566 -2.3223 13 8 7.5688 3.7291 -2.3643 14 6 6.7133 4.7102 -2.0127 15 1 5.7315 4.4618 -1.6376 16 6 7.0940 6.0380 -2.1329 17 7 8.2902 6.3406 -2.5896 18 14 5.9086 7.3973 -1.6466 19 1 6.0996 7.7308 -0.2122 20 1 6.1706 8.6022 -2.4741 21 1 4.5132 6.9394 -1.8668 22 6 5.8294 2.2016 -1.8211 23 6 4.0548 -1.4188 0.0469 24 6 3.4864 -0.6776 1.2592 25 7 2.0193 -0.6916 1.1995 26 6 1.4373 -0.1104 2.4166 27 1 -0.3633 0.5144 0.8896 28 1 -0.3633 0.5133 -0.8903 29 1 -0.3633 -1.0276 0.0005 30 1 1.6895 -0.1983 -2.1399 31 1 1.6659 -1.7448 -1.2575 32 1 3.5214 1.3681 -0.9570 33 1 5.7738 -1.1586 -2.2094 34 1 8.0229 -0.7007 -3.0939 35 1 8.8776 1.6050 -3.1603 36 1 8.5567 7.2694 -2.6733 37 1 5.2150 3.0150 -1.4642 38 1 3.7125 -2.4536 0.0597 39 1 5.1439 -1.3948 0.0834 40 1 3.8174 -1.1697 2.1737 41 1 3.8402 0.3534 1.2531 42 1 1.8277 0.8970 2.5607 43 1 0.3527 -0.0687 2.3166 44 1 1.6995 -0.7280 3.2756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155939999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:33 Heat of formation + Delta-G solvation = 5.365966 kcal Electronic energy + Delta-G solvation = -23443.504563 eV Core-core repulsion = 20168.299950 eV Total energy + Delta-G solvation = -3275.204613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98735 -38.77074 -36.84127 -34.91344 -32.57677 -32.27142 -31.78901 -28.92917 -28.09391 -27.01644 -26.27731 -25.21195 -23.11268 -21.78818 -21.55181 -20.83360 -19.06091 -17.70824 -17.34682 -16.01777 -15.89183 -15.52397 -15.06704 -14.88994 -14.63619 -14.30537 -14.24673 -13.66902 -13.54609 -13.39964 -12.88573 -12.64610 -12.53337 -12.26753 -12.21635 -12.01188 -11.89812 -11.65372 -11.60609 -11.40711 -11.13415 -11.02835 -10.73733 -10.61274 -10.52269 -10.39634 -10.20135 -9.36905 -9.34236 -8.73894 -8.44663 -7.32372 -6.72590 -6.39334 -3.98463 2.41700 2.60752 3.14161 3.15136 3.19460 3.69718 3.85236 4.00635 4.57671 4.62366 4.73324 4.82457 5.03327 5.10713 5.17746 5.19048 5.27144 5.36091 5.40087 5.42979 5.52362 5.53347 5.65543 5.69069 5.74197 5.84825 5.86698 5.92922 5.95640 6.04457 6.09174 6.17199 6.31831 6.41485 6.68745 6.70536 6.92610 6.96533 7.08078 7.17892 7.42805 7.52290 7.71075 8.06440 8.07249 8.24110 9.06897 9.80244 10.79161 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.004354 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.056336 B = 6429.717048 C = 7707.218508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.040 0.960 4 C -0.117 4.117 5 C 0.154 3.846 6 H 0.080 0.920 7 N -0.748 5.748 8 C 0.252 3.748 9 C -0.279 4.279 10 C -0.040 4.040 11 C -0.238 4.238 12 C 0.190 3.810 13 O -0.179 6.179 14 C -0.388 4.388 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.304 4.304 23 C -0.131 4.131 24 C 0.059 3.941 25 N -0.537 5.537 26 C 0.018 3.982 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.390 0.610 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.269 0.731 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 -13.923 5.956 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.048 3.952 6 H 0.098 0.902 7 N -0.380 5.380 8 C 0.150 3.850 9 C -0.302 4.302 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.136 3.864 13 O -0.083 6.083 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.327 4.327 23 C -0.170 4.170 24 C -0.069 4.069 25 N -0.263 5.263 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.225 0.775 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.627 -14.283 5.793 20.573 hybrid contribution -0.564 1.875 0.538 2.031 sum -14.191 -12.408 6.331 19.885 Atomic orbital electron populations 1.21945 0.94368 1.02518 1.01783 1.21591 0.95244 0.95569 0.90522 0.94206 1.21907 0.94770 1.01965 0.96914 1.20807 0.92840 0.84023 0.97498 0.90190 1.44701 1.15394 1.06802 1.71084 1.17467 0.84078 0.92915 0.90508 1.20097 0.97098 0.96813 1.16186 1.20381 0.94460 0.95068 0.95993 1.20031 1.01452 0.91255 1.13107 1.19067 0.90792 0.86124 0.90457 1.83985 1.38576 1.10517 1.75176 1.21276 0.97164 0.84250 1.43767 0.89305 1.25255 0.97116 0.97336 0.96837 1.70042 1.18193 1.19135 1.42650 0.85754 0.79512 0.79781 0.78593 1.19997 1.20263 1.19377 1.20489 0.99494 0.95066 1.17688 1.22064 1.01026 0.99396 0.94552 1.22019 0.86467 0.99698 0.98735 1.61999 1.07638 1.54713 1.01926 1.22455 1.00424 0.97586 0.92526 0.92406 0.92108 0.91737 0.90913 0.90006 0.77520 0.87725 0.87277 0.87006 0.92145 0.86068 0.90950 0.90717 0.91120 0.94294 0.95727 0.90928 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.79 37.16 0.33 -0.92 16 2 C 0.08 0.80 2.28 -67.72 -0.15 0.65 16 3 H 0.04 0.46 6.64 -51.93 -0.34 0.12 16 4 C -0.12 -1.18 5.03 -26.65 -0.13 -1.32 16 5 C 0.15 1.84 2.49 -67.81 -0.17 1.67 16 6 H 0.08 0.98 6.49 -51.93 -0.34 0.64 16 7 N -0.75 -11.09 4.52 -52.06 -0.24 -11.32 16 8 C 0.25 4.69 6.63 -83.81 -0.56 4.13 16 9 C -0.28 -4.94 8.85 -39.33 -0.35 -5.29 16 10 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 11 C -0.24 -5.24 9.99 -39.35 -0.39 -5.64 16 12 C 0.19 4.75 6.64 -39.14 -0.26 4.49 16 13 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 14 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 15 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 18 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.30 -6.78 9.01 -39.20 -0.35 -7.13 16 23 C -0.13 -1.49 5.70 -26.65 -0.15 -1.64 16 24 C 0.06 0.67 5.31 -3.84 -0.02 0.65 16 25 N -0.54 -5.62 4.75 -234.93 -1.11 -6.73 16 26 C 0.02 0.17 9.30 60.06 0.56 0.73 16 27 H 0.06 0.46 6.15 -51.93 -0.32 0.14 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.39 5.69 7.02 -40.82 -0.29 5.40 16 33 H 0.10 1.59 6.17 -52.49 -0.32 1.27 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.75 5.64 -52.49 -0.30 2.46 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.04 0.52 7.69 -51.93 -0.40 0.12 16 42 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.58 5.75 -51.93 -0.30 0.28 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -30.79 342.67 -8.95 -39.74 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.64 Total: 8.16 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.86 Total: -20.58 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.59 Total: -43.10 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -8.95 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155939999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.105 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds