Wall clock time and date at job start Tue Mar 31 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.45240 * 2 1 4 4 C 1.53038 * 109.46148 * 240.01908 * 2 1 3 5 5 C 1.53121 * 109.27670 * 180.80413 * 4 2 1 6 6 H 1.08999 * 109.57737 * 177.59115 * 5 4 2 7 7 N 1.46496 * 109.52209 * 297.75493 * 5 4 2 8 8 C 1.39676 * 119.99772 * 204.68335 * 7 5 4 9 9 C 1.39010 * 120.03643 * 359.97438 * 8 7 5 10 10 C 1.38150 * 120.05981 * 180.02562 * 9 8 7 11 11 C 1.38176 * 120.14188 * 0.22930 * 10 9 8 12 12 C 1.38918 * 120.08063 * 359.49786 * 11 10 9 13 13 O 1.35749 * 120.03362 * 180.25554 * 12 11 10 14 14 C 1.34830 * 116.99867 * 174.73731 * 13 12 11 15 15 H 1.07996 * 120.00380 * 5.05042 * 14 13 12 16 16 C 1.38652 * 119.99840 * 185.05414 * 14 13 12 17 17 N 1.31564 * 119.99867 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46886 * 89.99894 * 18 16 14 20 20 H 1.48498 * 109.47387 * 209.99882 * 18 16 14 21 21 H 1.48503 * 109.46876 * 330.00152 * 18 16 14 22 22 C 1.38749 * 120.04314 * 180.02562 * 8 7 5 23 23 C 1.53123 * 109.15919 * 57.65601 * 5 4 2 24 24 C 1.53033 * 109.27829 * 302.34733 * 23 5 4 25 25 N 1.46845 * 109.45954 * 119.96651 * 2 1 3 26 26 C 1.46897 * 111.00613 * 305.85677 * 25 2 1 27 27 H 1.08998 * 109.47035 * 300.03553 * 1 2 3 28 28 H 1.09001 * 109.46989 * 60.03165 * 1 2 3 29 29 H 1.08998 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49867 * 60.86477 * 4 2 1 31 31 H 1.08997 * 109.50537 * 300.75115 * 4 2 1 32 32 H 0.96998 * 120.00392 * 24.68187 * 7 5 4 33 33 H 1.07999 * 119.97350 * 0.02562 * 9 8 7 34 34 H 1.08000 * 119.93185 * 179.97438 * 10 9 8 35 35 H 1.08001 * 119.96140 * 179.74520 * 11 10 9 36 36 H 0.96998 * 120.00035 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.06883 * 359.97438 * 22 8 7 38 38 H 1.09001 * 109.50066 * 62.28701 * 23 5 4 39 39 H 1.08993 * 109.50375 * 182.39886 * 23 5 4 40 40 H 1.09001 * 109.46257 * 179.19629 * 24 23 5 41 41 H 1.09004 * 109.46278 * 299.17050 * 24 23 5 42 42 H 1.08998 * 109.46938 * 291.83907 * 26 25 2 43 43 H 1.09003 * 109.46818 * 51.83156 * 26 25 2 44 44 H 1.08995 * 109.47851 * 171.83741 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5710 -0.7362 -1.2355 6 1 3.9390 -1.2859 -2.1018 7 7 4.0746 0.6389 -1.2780 8 6 5.3513 0.8997 -1.7809 9 6 6.1449 -0.1449 -2.2407 10 6 7.4079 0.1125 -2.7376 11 6 7.8882 1.4076 -2.7750 12 6 7.0980 2.4566 -2.3223 13 8 7.5688 3.7291 -2.3643 14 6 6.7133 4.7102 -2.0127 15 1 5.7315 4.4618 -1.6376 16 6 7.0940 6.0380 -2.1329 17 7 8.2902 6.3406 -2.5896 18 14 5.9086 7.3973 -1.6466 19 1 6.0996 7.7308 -0.2122 20 1 6.1706 8.6022 -2.4741 21 1 4.5132 6.9394 -1.8668 22 6 5.8294 2.2016 -1.8211 23 6 4.0548 -1.4188 0.0469 24 6 3.4864 -0.6776 1.2592 25 7 2.0193 -0.6916 1.1995 26 6 1.4373 -0.1104 2.4166 27 1 -0.3633 0.5144 0.8896 28 1 -0.3633 0.5133 -0.8903 29 1 -0.3633 -1.0276 0.0005 30 1 1.6895 -0.1983 -2.1399 31 1 1.6659 -1.7448 -1.2575 32 1 3.5214 1.3681 -0.9570 33 1 5.7738 -1.1586 -2.2094 34 1 8.0229 -0.7007 -3.0939 35 1 8.8776 1.6050 -3.1603 36 1 8.5567 7.2694 -2.6733 37 1 5.2150 3.0150 -1.4642 38 1 3.7125 -2.4536 0.0597 39 1 5.1439 -1.3948 0.0834 40 1 3.8174 -1.1697 2.1737 41 1 3.8402 0.3534 1.2531 42 1 1.8277 0.8970 2.5607 43 1 0.3527 -0.0687 2.3166 44 1 1.6995 -0.7280 3.2756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155939999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:30 Heat of formation + Delta-G solvation = -14.681087 kcal Electronic energy + Delta-G solvation = -23444.373868 eV Core-core repulsion = 20168.299950 eV Total energy + Delta-G solvation = -3276.073918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.12758 -40.33634 -38.44133 -36.19418 -34.25683 -33.37920 -33.07897 -30.56932 -29.46969 -27.99914 -27.24167 -27.10487 -24.07931 -23.25464 -22.90084 -22.01569 -20.32498 -19.50931 -18.91766 -17.35819 -16.97392 -16.64741 -16.35913 -16.25693 -15.92202 -15.68957 -15.63305 -15.35912 -14.92618 -14.54017 -14.37200 -14.03967 -13.59810 -13.50083 -13.39044 -13.19629 -12.91883 -12.78639 -12.71655 -12.59777 -12.49207 -12.36703 -12.15837 -11.94965 -11.91328 -11.64077 -11.30948 -11.10985 -10.89194 -10.57995 -9.31253 -9.10202 -8.46692 -8.21263 -6.14943 0.77267 0.93245 1.31400 1.41969 1.49095 2.16499 2.53597 2.88501 2.94009 3.26869 3.59302 3.73100 3.81613 3.96737 4.14227 4.21642 4.28765 4.33826 4.42758 4.49875 4.57347 4.60389 4.62026 4.70689 4.78653 4.80292 4.88741 4.89638 4.95131 5.01369 5.07502 5.13036 5.14968 5.19692 5.21873 5.24969 5.37088 5.49662 5.75812 5.81925 6.04271 6.09635 6.12660 6.14093 6.63380 6.82900 6.98639 7.82613 8.77041 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.004354 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.056336 B = 6429.717048 C = 7707.218508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.021 0.979 4 C -0.110 4.110 5 C 0.149 3.851 6 H 0.088 0.912 7 N -0.737 5.737 8 C 0.260 3.740 9 C -0.261 4.261 10 C -0.026 4.026 11 C -0.263 4.263 12 C 0.153 3.847 13 O -0.233 6.233 14 C -0.410 4.410 15 H 0.096 0.904 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.017 2.983 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.256 1.256 22 C -0.319 4.319 23 C -0.125 4.125 24 C 0.059 3.941 25 N -0.535 5.535 26 C 0.017 3.983 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.391 0.609 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.272 0.728 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.086 0.914 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 -16.645 6.509 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 H 0.039 0.961 4 C -0.148 4.148 5 C 0.044 3.956 6 H 0.106 0.894 7 N -0.367 5.367 8 C 0.156 3.844 9 C -0.284 4.284 10 C -0.044 4.044 11 C -0.284 4.284 12 C 0.102 3.898 13 O -0.140 6.140 14 C -0.486 4.486 15 H 0.113 0.887 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.836 3.164 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.179 1.179 22 C -0.343 4.343 23 C -0.164 4.164 24 C -0.069 4.069 25 N -0.260 5.260 26 C -0.131 4.131 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.226 0.774 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.105 0.895 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.445 -17.079 6.364 24.548 hybrid contribution 0.195 2.368 0.405 2.410 sum -16.249 -14.711 6.769 22.941 Atomic orbital electron populations 1.21905 0.92782 1.03116 1.02311 1.21653 0.96531 0.94529 0.90560 0.96084 1.21877 0.93040 1.03030 0.96897 1.21090 0.94312 0.82019 0.98148 0.89429 1.44867 1.13833 1.08534 1.69472 1.17541 0.85566 0.91719 0.89544 1.20566 0.96247 0.98153 1.13387 1.20839 0.95045 0.94420 0.94103 1.20256 1.01405 0.92333 1.14426 1.19637 0.92584 0.85484 0.92111 1.83943 1.40057 1.12206 1.77765 1.21744 0.97656 0.85006 1.44238 0.88653 1.26558 0.99159 0.99760 0.96555 1.70189 1.20700 1.19884 1.45210 0.84620 0.77229 0.75907 0.78623 1.18835 1.19327 1.17944 1.20482 0.98770 0.96564 1.18497 1.22013 1.00244 1.00329 0.93858 1.21987 0.87319 0.98260 0.99301 1.62062 1.06817 1.54668 1.02480 1.22522 1.01181 0.97058 0.92357 0.92037 0.91552 0.91010 0.90675 0.88223 0.77427 0.83846 0.83021 0.87687 0.91875 0.87483 0.88915 0.91887 0.90435 0.96904 0.96842 0.89543 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.79 71.98 0.63 -1.36 16 2 C 0.08 1.35 2.28 44.94 0.10 1.45 16 3 H 0.02 0.46 6.64 -2.39 -0.02 0.44 16 4 C -0.11 -1.85 5.03 30.65 0.15 -1.69 16 5 C 0.15 3.06 2.49 45.07 0.11 3.17 16 6 H 0.09 1.73 6.49 -2.39 -0.02 1.71 16 7 N -0.74 -20.56 4.52 -318.63 -1.44 -22.00 16 8 C 0.26 9.39 6.63 38.20 0.25 9.64 16 9 C -0.26 -8.41 8.85 22.43 0.20 -8.21 16 10 C -0.03 -0.89 10.03 22.23 0.22 -0.66 16 11 C -0.26 -11.85 9.99 22.42 0.22 -11.63 16 12 C 0.15 8.03 6.64 22.56 0.15 8.18 16 13 O -0.23 -14.67 9.76 -22.73 -0.22 -14.89 16 14 C -0.41 -24.82 9.49 67.92 0.64 -24.18 16 15 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 16 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 17 N -0.92 -57.99 13.67 21.61 0.30 -57.69 16 18 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 C -0.32 -14.68 9.01 22.52 0.20 -14.48 16 23 C -0.13 -2.44 5.70 30.65 0.17 -2.27 16 24 C 0.06 1.24 5.31 86.32 0.46 1.70 16 25 N -0.54 -9.84 4.75 -897.19 -4.26 -14.09 16 26 C 0.02 0.27 9.30 127.69 1.19 1.46 16 27 H 0.06 0.81 6.15 -2.39 -0.01 0.79 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.39 11.07 7.02 -92.71 -0.65 10.42 16 33 H 0.14 3.58 6.17 -2.91 -0.02 3.57 16 34 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.11 5.12 5.64 -2.91 -0.02 5.10 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.39 7.77 -2.39 -0.02 1.38 16 40 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 41 H 0.01 0.33 7.69 -2.39 -0.02 0.31 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.09 1.16 5.75 -2.39 -0.01 1.15 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -72.07 342.67 1.94 -70.13 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.35 Total: 32.16 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 5.19 Total: -39.77 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -5.40 Total: -93.79 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.22 Total: -14.89 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -72.07 1.94 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155939999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.449 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds