Wall clock time and date at job start Tue Mar 31 2020 07:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52994 * 109.47410 * 120.00145 * 2 1 3 5 5 C 1.52998 * 109.47627 * 175.00194 * 4 2 1 6 6 H 1.09002 * 109.47169 * 54.99734 * 5 4 2 7 7 C 1.52996 * 109.47459 * 175.00102 * 5 4 2 8 8 N 1.46502 * 109.46896 * 294.99952 * 5 4 2 9 9 C 1.34783 * 119.99796 * 154.99573 * 8 5 4 10 10 O 1.21581 * 120.00054 * 0.02562 * 9 8 5 11 11 N 1.34775 * 119.99771 * 180.02562 * 9 8 5 12 12 C 1.39243 * 119.99840 * 174.85663 * 11 9 8 13 13 C 1.39473 * 119.83348 * 325.32478 * 12 11 9 14 14 C 1.36383 * 120.16640 * 179.75573 * 13 12 11 15 15 C 1.40870 * 119.82623 * 0.51839 * 14 13 12 16 16 C 1.41152 * 120.16047 * 179.71482 * 15 14 13 17 17 H 1.07997 * 120.00159 * 205.36710 * 16 15 14 18 18 C 1.39899 * 120.00169 * 25.37296 * 16 15 14 19 19 N 1.30873 * 120.00014 * 16.81217 * 18 16 15 20 20 Si 1.86805 * 119.99975 * 196.81512 * 18 16 15 21 21 H 1.48502 * 109.47047 * 59.99734 * 20 18 16 22 22 H 1.48502 * 109.46800 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46850 * 299.99940 * 20 18 16 24 24 C 1.40863 * 119.67091 * 359.73724 * 15 14 13 25 25 C 1.36373 * 119.83442 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.47344 * 300.00119 * 1 2 3 27 27 H 1.09005 * 109.47077 * 60.00186 * 1 2 3 28 28 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47262 * 240.00588 * 2 1 3 30 30 H 1.09004 * 109.47598 * 300.00003 * 3 2 1 31 31 H 1.08998 * 109.47096 * 60.00351 * 3 2 1 32 32 H 1.09006 * 109.47100 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47201 * 54.99862 * 4 2 1 34 34 H 1.09008 * 109.46874 * 295.00560 * 4 2 1 35 35 H 1.09003 * 109.47349 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47241 * 300.00026 * 7 5 4 37 37 H 1.09002 * 109.47230 * 59.99669 * 7 5 4 38 38 H 0.97002 * 120.00155 * 335.27975 * 8 5 4 39 39 H 0.97002 * 120.00257 * 354.86006 * 11 9 8 40 40 H 1.07994 * 119.91906 * 0.02562 * 13 12 11 41 41 H 1.08000 * 120.08256 * 180.25094 * 14 13 12 42 42 H 0.96999 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.08010 * 120.08082 * 179.97438 * 24 15 14 44 44 H 1.08000 * 119.91654 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1612 1.0527 7 6 4.0852 -1.4394 2.4917 8 7 3.9480 -1.6871 0.0626 9 6 5.1612 -1.5477 -0.5077 10 8 5.9379 -0.7118 -0.0878 11 7 5.5135 -2.3350 -1.5433 12 6 6.7218 -2.1207 -2.2012 13 6 7.2088 -0.8225 -2.3525 14 6 8.3940 -0.6052 -2.9913 15 6 9.1213 -1.6951 -3.5086 16 6 10.3457 -1.4777 -4.1763 17 1 10.6970 -2.1920 -4.9062 18 6 11.1044 -0.3371 -3.8925 19 7 10.8700 0.3505 -2.8039 20 14 12.4519 0.2045 -5.0674 21 1 11.8619 0.4885 -6.4003 22 1 13.1022 1.4321 -4.5427 23 1 13.4624 -0.8763 -5.1936 24 6 8.6203 -3.0028 -3.3565 25 6 7.4360 -3.2049 -2.7111 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 5.1715 -1.5180 2.4479 36 1 3.8001 -0.8025 3.3291 37 1 3.6546 -2.4316 2.6270 38 1 3.3269 -2.3515 -0.2749 39 1 4.9253 -3.0509 -1.8304 40 1 6.6481 0.0124 -1.9589 41 1 8.7717 0.4003 -3.1041 42 1 11.3963 1.1412 -2.6069 43 1 9.1722 -3.8433 -3.7509 44 1 7.0505 -4.2069 -2.5942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156254643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:34 Heat of formation + Delta-G solvation = -31.320232 kcal Electronic energy + Delta-G solvation = -22883.375563 eV Core-core repulsion = 19606.580117 eV Total energy + Delta-G solvation = -3276.795446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -39.96478 -37.97555 -36.88936 -34.50428 -34.03606 -32.90056 -30.74059 -29.40377 -28.61768 -27.34292 -26.76311 -24.86358 -22.19298 -21.25234 -20.88296 -19.95514 -19.91491 -17.94170 -17.24054 -16.54424 -15.64991 -15.22346 -15.03345 -14.72920 -14.35183 -14.04600 -13.85193 -13.41337 -13.01563 -12.90257 -12.65183 -12.47382 -12.39606 -12.22055 -11.98432 -11.78242 -11.75104 -11.51914 -11.39595 -11.06185 -10.92793 -10.83531 -10.75365 -10.48111 -10.44302 -9.91393 -9.80800 -9.45426 -9.19087 -8.77628 -8.62746 -7.44860 -6.90867 -6.65790 -4.21953 2.75660 3.10385 3.11160 3.14448 3.15738 3.25088 3.82800 3.98750 4.49861 4.68998 4.71617 4.73069 4.78573 5.17692 5.23564 5.32889 5.44414 5.52171 5.54984 5.69553 5.71395 5.75260 5.77311 5.79854 5.97932 6.02460 6.20096 6.21114 6.26485 6.31132 6.44865 6.78218 6.90341 6.93374 7.12053 7.18480 7.37003 7.44637 7.68696 7.94416 8.08763 8.12452 8.34008 8.60097 8.70306 8.95771 9.01085 9.23637 10.26956 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.003163 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.236711 B = 8850.076129 C = 9131.922414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.121 4.121 5 C 0.158 3.842 6 H 0.091 0.909 7 C -0.165 4.165 8 N -0.747 5.747 9 C 0.694 3.306 10 O -0.575 6.575 11 N -0.670 5.670 12 C 0.017 3.983 13 C -0.086 4.086 14 C -0.153 4.153 15 C 0.104 3.896 16 C -0.462 4.462 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.791 5.791 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.215 4.215 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.389 0.611 39 H 0.389 0.611 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.281 0.719 43 H 0.094 0.906 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 -1.605 5.906 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.109 0.891 7 C -0.223 4.223 8 N -0.403 5.403 9 C 0.394 3.606 10 O -0.451 6.451 11 N -0.316 5.316 12 C -0.076 4.076 13 C -0.106 4.106 14 C -0.173 4.173 15 C 0.102 3.898 16 C -0.492 4.492 17 H 0.095 0.905 18 C -0.144 4.144 19 N -0.416 5.416 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.235 4.235 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.222 0.778 39 H 0.221 0.779 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.546 -0.586 6.456 17.771 hybrid contribution 0.084 -0.487 -0.633 0.803 sum -16.463 -1.073 5.823 17.495 Atomic orbital electron populations 1.21844 0.95423 1.01450 1.01655 1.21109 0.95247 0.96769 0.98491 1.21901 1.01886 0.95621 1.01418 1.21965 0.94378 1.00925 0.98612 1.20809 0.93684 0.95127 0.85073 0.89135 1.22212 1.02563 1.00621 0.96924 1.45222 1.16261 1.41927 1.36933 1.16041 0.82003 0.82682 0.79850 1.90940 1.50995 1.37982 1.65211 1.42129 1.21513 1.35268 1.32650 1.16971 0.89189 0.93956 1.07478 1.20427 0.97241 0.94179 0.98775 1.20983 0.93793 0.99558 1.03003 1.17638 0.92075 0.90527 0.89608 1.19482 1.03599 1.05422 1.20668 0.90535 1.25918 0.98259 0.95598 0.94580 1.69854 1.36317 1.14734 1.20708 0.86382 0.80541 0.78549 0.81290 1.18885 1.20393 1.19083 1.20530 0.97979 0.96373 1.08612 1.20017 0.95699 0.94954 1.02218 0.92829 0.92795 0.92890 0.90928 0.92882 0.92870 0.91936 0.91597 0.90546 0.91742 0.92084 0.92903 0.77795 0.77851 0.88110 0.86301 0.90822 0.88732 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.10 -0.87 2.86 -90.62 -0.26 -1.13 16 3 C -0.15 -1.50 8.95 37.16 0.33 -1.16 16 4 C -0.12 -1.01 4.22 -26.74 -0.11 -1.13 16 5 C 0.16 1.85 2.44 -67.93 -0.17 1.68 16 6 H 0.09 1.28 5.78 -51.93 -0.30 0.98 16 7 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 8 N -0.75 -9.58 4.45 -58.68 -0.26 -9.84 16 9 C 0.69 12.69 8.25 -86.91 -0.72 11.98 16 10 O -0.57 -13.32 13.74 5.29 0.07 -13.25 16 11 N -0.67 -12.13 5.31 -14.10 -0.07 -12.20 16 12 C 0.02 0.38 6.27 -83.57 -0.52 -0.14 16 13 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 14 C -0.15 -4.20 8.63 -39.25 -0.34 -4.54 16 15 C 0.10 2.85 5.57 -106.80 -0.59 2.25 16 16 C -0.46 -12.49 9.04 -37.86 -0.34 -12.83 16 17 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 18 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 19 N -0.79 -21.33 10.94 55.55 0.61 -20.72 16 20 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.21 -5.32 9.74 -39.26 -0.38 -5.71 16 25 C -0.11 -2.44 9.90 -39.79 -0.39 -2.83 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.75 6.46 -51.93 -0.34 0.42 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.39 3.80 8.62 -40.82 -0.35 3.44 16 39 H 0.39 5.45 8.83 -40.82 -0.36 5.09 16 40 H 0.10 2.60 6.48 -52.49 -0.34 2.26 16 41 H 0.12 3.38 6.18 -52.49 -0.32 3.05 16 42 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 43 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 44 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -31.34 357.33 -9.57 -40.90 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.03 Total: 12.20 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.23 Total: -16.52 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.27 Total: -42.76 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.25 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.34 -9.57 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156254643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.581 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds