Wall clock time and date at job start Tue Mar 31 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52994 * 109.47410 * 120.00145 * 2 1 3 5 5 C 1.52998 * 109.47627 * 175.00194 * 4 2 1 6 6 H 1.09002 * 109.47169 * 54.99734 * 5 4 2 7 7 C 1.52996 * 109.47459 * 175.00102 * 5 4 2 8 8 N 1.46502 * 109.46896 * 294.99952 * 5 4 2 9 9 C 1.34783 * 119.99796 * 154.99573 * 8 5 4 10 10 O 1.21581 * 120.00054 * 0.02562 * 9 8 5 11 11 N 1.34775 * 119.99771 * 180.02562 * 9 8 5 12 12 C 1.39243 * 119.99840 * 174.85663 * 11 9 8 13 13 C 1.39473 * 119.83348 * 325.32478 * 12 11 9 14 14 C 1.36383 * 120.16640 * 179.75573 * 13 12 11 15 15 C 1.40870 * 119.82623 * 0.51839 * 14 13 12 16 16 C 1.41152 * 120.16047 * 179.71482 * 15 14 13 17 17 H 1.07997 * 120.00159 * 205.36710 * 16 15 14 18 18 C 1.39899 * 120.00169 * 25.37296 * 16 15 14 19 19 N 1.30873 * 120.00014 * 16.81217 * 18 16 15 20 20 Si 1.86805 * 119.99975 * 196.81512 * 18 16 15 21 21 H 1.48502 * 109.47047 * 59.99734 * 20 18 16 22 22 H 1.48502 * 109.46800 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46850 * 299.99940 * 20 18 16 24 24 C 1.40863 * 119.67091 * 359.73724 * 15 14 13 25 25 C 1.36373 * 119.83442 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.47344 * 300.00119 * 1 2 3 27 27 H 1.09005 * 109.47077 * 60.00186 * 1 2 3 28 28 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47262 * 240.00588 * 2 1 3 30 30 H 1.09004 * 109.47598 * 300.00003 * 3 2 1 31 31 H 1.08998 * 109.47096 * 60.00351 * 3 2 1 32 32 H 1.09006 * 109.47100 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47201 * 54.99862 * 4 2 1 34 34 H 1.09008 * 109.46874 * 295.00560 * 4 2 1 35 35 H 1.09003 * 109.47349 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47241 * 300.00026 * 7 5 4 37 37 H 1.09002 * 109.47230 * 59.99669 * 7 5 4 38 38 H 0.97002 * 120.00155 * 335.27975 * 8 5 4 39 39 H 0.97002 * 120.00257 * 354.86006 * 11 9 8 40 40 H 1.07994 * 119.91906 * 0.02562 * 13 12 11 41 41 H 1.08000 * 120.08256 * 180.25094 * 14 13 12 42 42 H 0.96999 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.08010 * 120.08082 * 179.97438 * 24 15 14 44 44 H 1.08000 * 119.91654 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1612 1.0527 7 6 4.0852 -1.4394 2.4917 8 7 3.9480 -1.6871 0.0626 9 6 5.1612 -1.5477 -0.5077 10 8 5.9379 -0.7118 -0.0878 11 7 5.5135 -2.3350 -1.5433 12 6 6.7218 -2.1207 -2.2012 13 6 7.2088 -0.8225 -2.3525 14 6 8.3940 -0.6052 -2.9913 15 6 9.1213 -1.6951 -3.5086 16 6 10.3457 -1.4777 -4.1763 17 1 10.6970 -2.1920 -4.9062 18 6 11.1044 -0.3371 -3.8925 19 7 10.8700 0.3505 -2.8039 20 14 12.4519 0.2045 -5.0674 21 1 11.8619 0.4885 -6.4003 22 1 13.1022 1.4321 -4.5427 23 1 13.4624 -0.8763 -5.1936 24 6 8.6203 -3.0028 -3.3565 25 6 7.4360 -3.2049 -2.7111 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 5.1715 -1.5180 2.4479 36 1 3.8001 -0.8025 3.3291 37 1 3.6546 -2.4316 2.6270 38 1 3.3269 -2.3515 -0.2749 39 1 4.9253 -3.0509 -1.8304 40 1 6.6481 0.0124 -1.9589 41 1 8.7717 0.4003 -3.1041 42 1 11.3963 1.1412 -2.6069 43 1 9.1722 -3.8433 -3.7509 44 1 7.0505 -4.2069 -2.5942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156254643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:29 Heat of formation + Delta-G solvation = -50.061152 kcal Electronic energy + Delta-G solvation = -22884.188230 eV Core-core repulsion = 19606.580117 eV Total energy + Delta-G solvation = -3277.608113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.20 seconds Orbital eigenvalues (eV) -41.43928 -39.48087 -38.22150 -36.15794 -35.24418 -34.67997 -32.00963 -31.35844 -30.39244 -28.03686 -27.56367 -26.72281 -23.66064 -23.08474 -22.17988 -21.53264 -20.77123 -19.44842 -19.18022 -18.10893 -17.16764 -16.65598 -16.22307 -15.90212 -15.73905 -15.43621 -15.32124 -14.77183 -14.49760 -14.28766 -13.94429 -13.83788 -13.64211 -13.43739 -13.27988 -13.03441 -12.98225 -12.77253 -12.67592 -12.59953 -12.30379 -12.29848 -11.75310 -11.70189 -11.55673 -11.49945 -11.31313 -11.22945 -11.01072 -10.49212 -10.00539 -9.42974 -8.80299 -8.57542 -6.24000 0.89734 1.16177 1.38303 1.49611 1.52568 1.85679 2.21578 2.27803 2.80787 3.45007 3.72986 3.77064 3.95747 4.03659 4.35161 4.39783 4.45508 4.46778 4.48512 4.76333 4.79574 4.83110 4.85873 4.95514 5.00205 5.02900 5.09284 5.11156 5.13471 5.20802 5.31481 5.32438 5.38514 5.44936 5.47252 5.52756 5.68307 5.69941 5.82701 6.11173 6.15553 6.26940 6.39293 6.70912 6.95317 7.04720 7.24900 7.75752 8.36718 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.003163 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.236711 B = 8850.076129 C = 9131.922414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.109 4.109 5 C 0.154 3.846 6 H 0.059 0.941 7 C -0.160 4.160 8 N -0.721 5.721 9 C 0.691 3.309 10 O -0.628 6.628 11 N -0.660 5.660 12 C 0.031 3.969 13 C -0.100 4.100 14 C -0.178 4.178 15 C 0.071 3.929 16 C -0.496 4.496 17 H 0.082 0.918 18 C 0.029 3.971 19 N -0.832 5.832 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.256 1.256 24 C -0.222 4.222 25 C -0.102 4.102 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.414 0.586 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.286 0.714 43 H 0.111 0.889 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 -3.494 6.195 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.209 4.209 4 C -0.146 4.146 5 C 0.049 3.951 6 H 0.078 0.922 7 C -0.218 4.218 8 N -0.378 5.378 9 C 0.391 3.609 10 O -0.508 6.508 11 N -0.308 5.308 12 C -0.063 4.063 13 C -0.121 4.121 14 C -0.198 4.198 15 C 0.069 3.931 16 C -0.526 4.526 17 H 0.100 0.900 18 C -0.185 4.185 19 N -0.458 5.458 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.242 4.242 25 C -0.122 4.122 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.251 0.749 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.769 -2.530 6.754 20.107 hybrid contribution 0.574 0.070 -0.613 0.843 sum -18.195 -2.461 6.141 19.360 Atomic orbital electron populations 1.21793 0.93659 1.02416 1.01996 1.21103 0.96619 0.95599 0.98259 1.21903 0.99922 0.97052 1.02001 1.21911 0.91197 1.02528 0.98991 1.20968 0.96128 0.93375 0.84608 0.92241 1.22162 1.00016 1.02290 0.97328 1.45021 1.14429 1.41949 1.36407 1.16261 0.82992 0.81843 0.79764 1.90921 1.53067 1.40089 1.66733 1.41885 1.20523 1.36054 1.32366 1.17019 0.90362 0.92920 1.06038 1.20436 0.97009 0.95466 0.99146 1.20868 0.95018 0.98878 1.05053 1.17981 0.92846 0.91615 0.90670 1.19785 1.04242 1.06908 1.21673 0.89982 1.26867 1.00690 0.95071 0.95887 1.69948 1.37883 1.15400 1.22588 0.85209 0.77242 0.78347 0.78611 1.18295 1.19648 1.17970 1.20824 0.98979 0.95799 1.08560 1.20374 0.94601 0.96791 1.00481 0.91974 0.93063 0.91586 0.92134 0.93078 0.91581 0.94919 0.89140 0.88889 0.95614 0.90098 0.90780 0.75373 0.74948 0.89418 0.88716 0.90392 0.87107 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.10 -1.52 2.86 -10.80 -0.03 -1.55 16 3 C -0.15 -2.94 8.95 71.98 0.64 -2.30 16 4 C -0.11 -1.49 4.22 30.59 0.13 -1.36 16 5 C 0.15 3.41 2.44 44.99 0.11 3.52 16 6 H 0.06 1.74 5.78 -2.39 -0.01 1.73 16 7 C -0.16 -3.39 9.48 71.98 0.68 -2.71 16 8 N -0.72 -17.39 4.45 -457.82 -2.04 -19.43 16 9 C 0.69 25.10 8.25 179.05 1.48 26.57 16 10 O -0.63 -30.19 13.74 -3.97 -0.05 -30.25 16 11 N -0.66 -22.94 5.31 -316.78 -1.68 -24.63 16 12 C 0.03 1.40 6.27 38.56 0.24 1.64 16 13 C -0.10 -5.34 8.57 22.13 0.19 -5.15 16 14 C -0.18 -10.30 8.63 22.48 0.19 -10.11 16 15 C 0.07 4.04 5.57 -21.28 -0.12 3.92 16 16 C -0.50 -27.66 9.04 23.39 0.21 -27.45 16 17 H 0.08 4.30 7.90 -2.91 -0.02 4.27 16 18 C 0.03 1.53 5.15 85.24 0.44 1.97 16 19 N -0.83 -47.00 10.94 21.82 0.24 -46.76 16 20 Si 0.99 39.86 29.59 68.60 2.03 41.89 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 C -0.22 -10.92 9.74 22.48 0.22 -10.70 16 25 C -0.10 -4.41 9.90 22.13 0.22 -4.19 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 1.09 7.62 -2.38 -0.02 1.08 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.03 0.82 6.46 -2.38 -0.02 0.81 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.41 6.69 8.62 -92.71 -0.80 5.89 16 39 H 0.41 10.29 8.83 -92.71 -0.82 9.47 16 40 H 0.09 4.82 6.48 -2.91 -0.02 4.80 16 41 H 0.09 5.81 6.18 -2.91 -0.02 5.79 16 42 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 43 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 44 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -73.24 357.33 3.15 -70.09 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.61 Total: 37.97 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 5.27 Total: -28.88 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.48 Total: -90.81 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.25 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -73.24 3.15 -70.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156254643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.028 kcal (2) G-P(sol) polarization free energy of solvation -73.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.20 seconds