Wall clock time and date at job start Tue Mar 31 2020 07:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.52996 * 109.47167 * 120.00170 * 2 1 3 5 5 C 1.52997 * 109.47238 * 65.00019 * 4 2 1 6 6 H 1.09001 * 109.47272 * 304.99988 * 5 4 2 7 7 C 1.53005 * 109.47514 * 184.99846 * 5 4 2 8 8 N 1.46503 * 109.47501 * 65.00161 * 5 4 2 9 9 C 1.34771 * 120.00253 * 205.00163 * 8 5 4 10 10 O 1.21581 * 120.00328 * 359.97438 * 9 8 5 11 11 N 1.34777 * 119.99664 * 179.97438 * 9 8 5 12 12 C 1.39241 * 119.99972 * 185.14665 * 11 9 8 13 13 C 1.39484 * 119.83618 * 214.19447 * 12 11 9 14 14 C 1.36378 * 120.16787 * 179.71270 * 13 12 11 15 15 C 1.40871 * 119.82606 * 0.58284 * 14 13 12 16 16 C 1.41159 * 120.15840 * 179.67407 * 15 14 13 17 17 H 1.08004 * 119.99810 * 205.37206 * 16 15 14 18 18 C 1.39898 * 120.00308 * 25.37155 * 16 15 14 19 19 N 1.30881 * 119.99681 * 16.81726 * 18 16 15 20 20 Si 1.86797 * 120.00006 * 196.81940 * 18 16 15 21 21 H 1.48497 * 109.47116 * 89.99792 * 20 18 16 22 22 H 1.48501 * 109.47052 * 209.99975 * 20 18 16 23 23 H 1.48508 * 109.46819 * 329.99849 * 20 18 16 24 24 C 1.40861 * 119.67370 * 359.69563 * 15 14 13 25 25 C 1.36376 * 119.82955 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.46812 * 60.00349 * 1 2 3 27 27 H 1.09000 * 109.46610 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46915 * 299.99744 * 1 2 3 29 29 H 1.09005 * 109.47312 * 239.99850 * 2 1 3 30 30 H 1.08998 * 109.47557 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47268 * 300.00425 * 3 2 1 32 32 H 1.09005 * 109.46859 * 60.00216 * 3 2 1 33 33 H 1.09005 * 109.47456 * 305.00272 * 4 2 1 34 34 H 1.09000 * 109.47567 * 184.99887 * 4 2 1 35 35 H 1.08993 * 109.47255 * 300.00401 * 7 5 4 36 36 H 1.09003 * 109.46679 * 60.00170 * 7 5 4 37 37 H 1.08997 * 109.47583 * 179.97438 * 7 5 4 38 38 H 0.97007 * 119.99475 * 24.99794 * 8 5 4 39 39 H 0.96996 * 120.00371 * 5.14138 * 11 9 8 40 40 H 1.07994 * 119.91157 * 0.02562 * 13 12 11 41 41 H 1.07999 * 120.08563 * 180.25830 * 14 13 12 42 42 H 0.97000 * 119.99908 * 179.97438 * 19 18 16 43 43 H 1.08010 * 120.08349 * 179.97438 * 24 15 14 44 44 H 1.08006 * 119.91318 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5563 -2.2707 1.0527 7 6 2.0355 -2.8889 2.4917 8 7 2.3148 -2.8421 0.0625 9 6 1.7791 -3.9395 -0.5077 10 8 0.7321 -4.3932 -0.0879 11 7 2.4040 -4.5340 -1.5433 12 6 1.7992 -5.6018 -2.2013 13 6 2.5836 -6.6347 -2.7145 14 6 1.9980 -7.6867 -3.3550 15 6 0.5981 -7.7222 -3.5084 16 6 -0.0149 -8.8043 -4.1763 17 1 -0.9743 -8.6705 -4.6539 18 6 0.6203 -10.0500 -4.2195 19 7 1.5954 -10.3166 -3.3881 20 14 0.0768 -11.3328 -5.4638 21 1 0.8574 -11.1692 -6.7165 22 1 0.3099 -12.6905 -4.9091 23 1 -1.3690 -11.1585 -5.7551 24 6 -0.1869 -6.6725 -2.9925 25 6 0.4125 -5.6306 -2.3485 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 3.1143 -2.8137 2.6270 36 1 1.5299 -2.4079 3.3291 37 1 1.7467 -3.9391 2.4483 38 1 3.1503 -2.4804 -0.2722 39 1 3.2750 -4.2180 -1.8303 40 1 3.6570 -6.6037 -2.5999 41 1 2.6062 -8.4878 -3.7483 42 1 2.0355 -11.1804 -3.4178 43 1 -1.2607 -6.6929 -3.1068 44 1 -0.1880 -4.8248 -1.9527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156254773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:44 Heat of formation + Delta-G solvation = -31.979761 kcal Electronic energy + Delta-G solvation = -22794.451033 eV Core-core repulsion = 19517.626987 eV Total energy + Delta-G solvation = -3276.824045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.98688 -37.98994 -36.90697 -34.51943 -34.04725 -32.92397 -30.74940 -29.47320 -28.57205 -27.36344 -26.78077 -24.87372 -22.26487 -21.28827 -20.74960 -20.02812 -19.95974 -17.97846 -17.22960 -16.55912 -15.58876 -15.24702 -15.16052 -14.71017 -14.36863 -14.08426 -13.86652 -13.43335 -13.00960 -12.92766 -12.65464 -12.49845 -12.41291 -12.21286 -12.03597 -11.82866 -11.74250 -11.52713 -11.26824 -11.09433 -10.97989 -10.84980 -10.76691 -10.69227 -10.49045 -9.98189 -9.52488 -9.44314 -9.14480 -8.86365 -8.78756 -7.47737 -6.89518 -6.67703 -4.23750 2.72229 3.09040 3.11310 3.14024 3.15165 3.23690 3.80863 3.97312 4.48097 4.67195 4.69449 4.70693 4.77127 5.15784 5.21753 5.31112 5.42621 5.50361 5.53384 5.67463 5.69543 5.73683 5.75545 5.78072 5.95774 6.00568 6.18318 6.23053 6.26126 6.29137 6.48942 6.76085 6.84955 6.91447 7.10364 7.19280 7.34692 7.44986 7.67311 7.94806 8.04188 8.11501 8.34651 8.58408 8.66335 8.94628 8.99032 9.21226 10.24030 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.002923 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.872941 B = 9577.524361 C = 9793.943083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.159 3.841 6 H 0.090 0.910 7 C -0.165 4.165 8 N -0.747 5.747 9 C 0.694 3.306 10 O -0.578 6.578 11 N -0.668 5.668 12 C 0.016 3.984 13 C -0.117 4.117 14 C -0.152 4.152 15 C 0.103 3.897 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.796 5.796 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.214 4.214 25 C -0.077 4.077 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.389 0.611 39 H 0.390 0.610 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.279 0.721 43 H 0.094 0.906 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 17.066 6.293 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.159 4.159 5 C 0.053 3.947 6 H 0.108 0.892 7 C -0.224 4.224 8 N -0.403 5.403 9 C 0.395 3.605 10 O -0.455 6.455 11 N -0.314 5.314 12 C -0.077 4.077 13 C -0.137 4.137 14 C -0.172 4.172 15 C 0.101 3.899 16 C -0.489 4.489 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.421 5.421 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.234 4.234 25 C -0.097 4.097 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.223 0.777 39 H 0.222 0.778 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.928 16.470 6.771 18.236 hybrid contribution 0.746 -0.388 -0.669 1.075 sum 4.674 16.082 6.102 17.824 Atomic orbital electron populations 1.21897 0.95098 1.02381 1.01417 1.21111 0.96243 0.95768 0.98501 1.21845 1.00710 0.96177 1.01653 1.21965 1.01178 0.94147 0.98606 1.20810 0.98418 0.90369 0.85073 0.89157 1.22215 1.01157 1.02064 0.96919 1.45221 1.27758 1.30338 1.37002 1.16035 0.84215 0.80435 0.79820 1.90914 1.23696 1.65546 1.65366 1.42136 1.22033 1.34703 1.32556 1.16962 0.92195 0.90848 1.07702 1.20201 0.96977 0.93983 1.02586 1.20879 0.95125 0.97434 1.03743 1.17646 0.91636 0.91567 0.89099 1.19543 1.05189 0.93934 1.30254 0.90450 1.25909 0.94039 0.99568 0.94809 1.69854 1.19485 1.23044 1.29740 0.86308 0.80224 0.79126 0.81013 1.19346 1.20395 1.18655 1.20647 0.97831 0.98211 1.06706 1.20246 0.92674 0.98460 0.98338 0.92893 0.91973 0.92864 0.90917 0.92873 0.92786 0.92835 0.90542 0.91577 0.92867 0.92089 0.91747 0.77748 0.77764 0.89310 0.86138 0.90973 0.88800 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.16 0.33 -1.10 16 2 C -0.10 -0.84 2.86 -90.62 -0.26 -1.10 16 3 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 4 C -0.12 -0.99 4.22 -26.73 -0.11 -1.10 16 5 C 0.16 1.81 2.44 -67.93 -0.17 1.64 16 6 H 0.09 1.24 5.78 -51.93 -0.30 0.94 16 7 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 8 N -0.75 -9.43 4.45 -58.67 -0.26 -9.69 16 9 C 0.69 12.51 8.25 -86.92 -0.72 11.80 16 10 O -0.58 -13.05 13.73 5.29 0.07 -12.98 16 11 N -0.67 -12.09 5.31 -14.10 -0.07 -12.16 16 12 C 0.02 0.36 6.27 -83.57 -0.52 -0.17 16 13 C -0.12 -2.73 9.90 -39.79 -0.39 -3.13 16 14 C -0.15 -3.97 8.63 -39.26 -0.34 -4.31 16 15 C 0.10 2.82 5.57 -106.80 -0.59 2.22 16 16 C -0.46 -12.41 9.04 -37.85 -0.34 -12.76 16 17 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 18 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 19 N -0.80 -20.88 10.95 55.55 0.61 -20.27 16 20 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.21 -5.56 9.74 -39.26 -0.38 -5.94 16 25 C -0.08 -1.90 8.57 -39.79 -0.34 -2.24 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.71 7.62 -51.93 -0.40 0.31 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.39 3.76 8.62 -40.82 -0.35 3.41 16 39 H 0.39 5.52 8.83 -40.82 -0.36 5.16 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 42 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 43 H 0.09 2.32 8.06 -52.48 -0.42 1.90 16 44 H 0.10 2.48 6.47 -52.48 -0.34 2.14 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -30.94 357.31 -9.57 -40.51 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.03 Total: 11.92 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -3.23 Total: -16.59 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.27 Total: -42.13 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.94 -9.57 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156254773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.528 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds