Wall clock time and date at job start Tue Mar 31 2020 07:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.52996 * 109.47167 * 120.00170 * 2 1 3 5 5 C 1.52997 * 109.47238 * 65.00019 * 4 2 1 6 6 H 1.09001 * 109.47272 * 304.99988 * 5 4 2 7 7 C 1.53005 * 109.47514 * 184.99846 * 5 4 2 8 8 N 1.46503 * 109.47501 * 65.00161 * 5 4 2 9 9 C 1.34771 * 120.00253 * 205.00163 * 8 5 4 10 10 O 1.21581 * 120.00328 * 359.97438 * 9 8 5 11 11 N 1.34777 * 119.99664 * 179.97438 * 9 8 5 12 12 C 1.39241 * 119.99972 * 185.14665 * 11 9 8 13 13 C 1.39484 * 119.83618 * 214.19447 * 12 11 9 14 14 C 1.36378 * 120.16787 * 179.71270 * 13 12 11 15 15 C 1.40871 * 119.82606 * 0.58284 * 14 13 12 16 16 C 1.41159 * 120.15840 * 179.67407 * 15 14 13 17 17 H 1.08004 * 119.99810 * 205.37206 * 16 15 14 18 18 C 1.39898 * 120.00308 * 25.37155 * 16 15 14 19 19 N 1.30881 * 119.99681 * 16.81726 * 18 16 15 20 20 Si 1.86797 * 120.00006 * 196.81940 * 18 16 15 21 21 H 1.48497 * 109.47116 * 89.99792 * 20 18 16 22 22 H 1.48501 * 109.47052 * 209.99975 * 20 18 16 23 23 H 1.48508 * 109.46819 * 329.99849 * 20 18 16 24 24 C 1.40861 * 119.67370 * 359.69563 * 15 14 13 25 25 C 1.36376 * 119.82955 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.46812 * 60.00349 * 1 2 3 27 27 H 1.09000 * 109.46610 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46915 * 299.99744 * 1 2 3 29 29 H 1.09005 * 109.47312 * 239.99850 * 2 1 3 30 30 H 1.08998 * 109.47557 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47268 * 300.00425 * 3 2 1 32 32 H 1.09005 * 109.46859 * 60.00216 * 3 2 1 33 33 H 1.09005 * 109.47456 * 305.00272 * 4 2 1 34 34 H 1.09000 * 109.47567 * 184.99887 * 4 2 1 35 35 H 1.08993 * 109.47255 * 300.00401 * 7 5 4 36 36 H 1.09003 * 109.46679 * 60.00170 * 7 5 4 37 37 H 1.08997 * 109.47583 * 179.97438 * 7 5 4 38 38 H 0.97007 * 119.99475 * 24.99794 * 8 5 4 39 39 H 0.96996 * 120.00371 * 5.14138 * 11 9 8 40 40 H 1.07994 * 119.91157 * 0.02562 * 13 12 11 41 41 H 1.07999 * 120.08563 * 180.25830 * 14 13 12 42 42 H 0.97000 * 119.99908 * 179.97438 * 19 18 16 43 43 H 1.08010 * 120.08349 * 179.97438 * 24 15 14 44 44 H 1.08006 * 119.91318 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5563 -2.2707 1.0527 7 6 2.0355 -2.8889 2.4917 8 7 2.3148 -2.8421 0.0625 9 6 1.7791 -3.9395 -0.5077 10 8 0.7321 -4.3932 -0.0879 11 7 2.4040 -4.5340 -1.5433 12 6 1.7992 -5.6018 -2.2013 13 6 2.5836 -6.6347 -2.7145 14 6 1.9980 -7.6867 -3.3550 15 6 0.5981 -7.7222 -3.5084 16 6 -0.0149 -8.8043 -4.1763 17 1 -0.9743 -8.6705 -4.6539 18 6 0.6203 -10.0500 -4.2195 19 7 1.5954 -10.3166 -3.3881 20 14 0.0768 -11.3328 -5.4638 21 1 0.8574 -11.1692 -6.7165 22 1 0.3099 -12.6905 -4.9091 23 1 -1.3690 -11.1585 -5.7551 24 6 -0.1869 -6.6725 -2.9925 25 6 0.4125 -5.6306 -2.3485 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 3.1143 -2.8137 2.6270 36 1 1.5299 -2.4079 3.3291 37 1 1.7467 -3.9391 2.4483 38 1 3.1503 -2.4804 -0.2722 39 1 3.2750 -4.2180 -1.8303 40 1 3.6570 -6.6037 -2.5999 41 1 2.6062 -8.4878 -3.7483 42 1 2.0355 -11.1804 -3.4178 43 1 -1.2607 -6.6929 -3.1068 44 1 -0.1880 -4.8248 -1.9527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156254773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:41 Heat of formation + Delta-G solvation = -49.996023 kcal Electronic energy + Delta-G solvation = -22795.232276 eV Core-core repulsion = 19517.626987 eV Total energy + Delta-G solvation = -3277.605289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -41.44224 -39.48779 -38.22083 -36.14836 -35.23972 -34.68857 -32.00290 -31.39872 -30.36343 -28.02635 -27.55730 -26.72565 -23.78739 -22.92335 -22.16975 -21.59885 -20.76416 -19.49707 -19.12746 -18.12387 -17.06139 -16.79463 -16.22072 -15.89208 -15.71217 -15.44234 -15.30992 -14.78098 -14.50343 -14.28191 -13.97705 -13.82728 -13.63288 -13.41752 -13.18269 -13.02574 -12.97952 -12.83707 -12.74426 -12.58991 -12.46331 -12.29352 -11.78295 -11.55045 -11.49202 -11.42317 -11.30394 -11.18014 -10.99838 -10.67139 -10.00170 -9.45125 -8.79722 -8.57067 -6.25120 0.87570 1.15703 1.39835 1.49875 1.53381 1.85503 2.22934 2.27459 2.78507 3.44286 3.73243 3.75540 3.96580 4.04622 4.35859 4.39390 4.41651 4.47667 4.51565 4.76999 4.80439 4.84068 4.86731 4.92480 4.98899 5.03614 5.10335 5.12166 5.14526 5.17815 5.30990 5.33654 5.39389 5.45900 5.47409 5.53477 5.66339 5.69873 5.83620 6.05961 6.13842 6.29637 6.40476 6.67650 6.95112 7.02409 7.23744 7.74362 8.35809 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.002923 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.872941 B = 9577.524361 C = 9793.943083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.109 4.109 5 C 0.155 3.845 6 H 0.063 0.937 7 C -0.160 4.160 8 N -0.722 5.722 9 C 0.692 3.308 10 O -0.626 6.626 11 N -0.661 5.661 12 C 0.032 3.968 13 C -0.115 4.115 14 C -0.169 4.169 15 C 0.073 3.927 16 C -0.497 4.497 17 H 0.073 0.927 18 C 0.034 3.966 19 N -0.827 5.827 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.232 4.232 25 C -0.088 4.088 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.409 0.591 39 H 0.412 0.588 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.289 0.711 43 H 0.092 0.908 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 18.588 6.800 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.147 4.147 5 C 0.050 3.950 6 H 0.081 0.919 7 C -0.219 4.219 8 N -0.379 5.379 9 C 0.393 3.607 10 O -0.507 6.507 11 N -0.309 5.309 12 C -0.063 4.063 13 C -0.135 4.135 14 C -0.189 4.189 15 C 0.070 3.930 16 C -0.527 4.527 17 H 0.091 0.909 18 C -0.181 4.181 19 N -0.453 5.453 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.252 4.252 25 C -0.108 4.108 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.246 0.754 39 H 0.249 0.751 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.897 18.068 7.297 20.359 hybrid contribution 0.175 -0.703 -0.703 1.010 sum 6.072 17.365 6.594 19.542 Atomic orbital electron populations 1.21895 0.96209 1.00705 1.02004 1.21104 0.95287 0.96980 0.98226 1.21796 1.01388 0.94729 1.01999 1.21912 1.02602 0.91136 0.99032 1.20975 0.96948 0.92576 0.84508 0.91923 1.22170 1.02554 0.99738 0.97413 1.45040 1.28086 1.28231 1.36498 1.16226 0.83603 0.81221 0.79663 1.90893 1.25945 1.67126 1.66722 1.41912 1.22858 1.33670 1.32437 1.16990 0.91604 0.91533 1.06127 1.20455 0.98745 0.92940 1.01359 1.20899 0.94714 0.98320 1.04973 1.17964 0.92586 0.92291 0.90143 1.19767 1.05855 0.95178 1.31882 0.90875 1.26762 0.93847 1.01188 0.96264 1.69893 1.20406 1.24150 1.30831 0.85162 0.79706 0.76279 0.78276 1.18326 1.19260 1.18529 1.20767 0.97966 0.98892 1.07583 1.20332 0.93887 0.98162 0.98456 0.93061 0.94713 0.91600 0.92133 0.91719 0.93035 0.91982 0.88861 0.89335 0.90978 0.90039 0.95531 0.75438 0.75087 0.85883 0.87112 0.90085 0.88985 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.95 71.98 0.64 -2.10 16 2 C -0.10 -1.46 2.86 -10.79 -0.03 -1.49 16 3 C -0.14 -1.59 9.19 71.98 0.66 -0.93 16 4 C -0.11 -1.44 4.22 30.59 0.13 -1.31 16 5 C 0.15 3.29 2.44 44.99 0.11 3.40 16 6 H 0.06 1.74 5.78 -2.39 -0.01 1.72 16 7 C -0.16 -3.31 9.48 71.98 0.68 -2.63 16 8 N -0.72 -16.99 4.45 -457.81 -2.04 -19.03 16 9 C 0.69 24.53 8.25 179.06 1.48 26.01 16 10 O -0.63 -28.86 13.73 -3.97 -0.05 -28.91 16 11 N -0.66 -23.00 5.31 -316.79 -1.68 -24.68 16 12 C 0.03 1.44 6.27 38.56 0.24 1.68 16 13 C -0.11 -5.29 9.90 22.14 0.22 -5.07 16 14 C -0.17 -9.02 8.63 22.48 0.19 -8.82 16 15 C 0.07 4.13 5.57 -21.28 -0.12 4.01 16 16 C -0.50 -27.87 9.04 23.39 0.21 -27.65 16 17 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 18 C 0.03 1.74 5.15 85.24 0.44 2.18 16 19 N -0.83 -44.06 10.95 21.82 0.24 -43.82 16 20 Si 0.99 39.03 29.59 68.60 2.03 41.06 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 C -0.23 -12.61 9.74 22.48 0.22 -12.39 16 25 C -0.09 -4.46 8.57 22.13 0.19 -4.27 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.03 0.82 6.46 -2.39 -0.02 0.80 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.05 7.62 -2.38 -0.02 1.04 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.41 6.63 8.62 -92.70 -0.80 5.83 16 39 H 0.41 10.57 8.83 -92.71 -0.82 9.76 16 40 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.11 6.06 6.18 -2.91 -0.02 6.04 16 42 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 43 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 44 H 0.10 4.99 6.47 -2.91 -0.02 4.97 16 Total: -1.00 -70.45 357.31 3.15 -67.30 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -0.61 Total: 37.46 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 5.27 Total: -29.38 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -3.48 Total: -87.53 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.05 Total: -28.91 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -70.45 3.15 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156254773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.306 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.99 seconds