Wall clock time and date at job start Tue Mar 31 2020 07:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46646 * 2 1 4 4 C 1.50694 * 109.47322 * 240.00175 * 2 1 3 5 5 C 1.38246 * 119.99722 * 295.41491 * 4 2 1 6 6 C 1.38236 * 119.99686 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00275 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99619 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00282 * 115.32353 * 4 2 1 10 10 N 1.46498 * 109.47331 * 119.99374 * 2 1 3 11 11 C 1.46504 * 119.99322 * 53.83445 * 10 2 1 12 12 C 1.34771 * 120.00431 * 233.83475 * 10 2 1 13 13 O 1.21583 * 119.99983 * 0.02562 * 12 10 2 14 14 N 1.34777 * 120.00069 * 179.97438 * 12 10 2 15 15 C 1.46500 * 120.00078 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47126 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47083 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47458 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99634 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00432 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00086 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47332 * 89.99941 * 22 20 18 24 24 H 1.48502 * 109.47074 * 210.00435 * 22 20 18 25 25 H 1.48503 * 109.47363 * 330.00173 * 22 20 18 26 26 H 1.08993 * 109.47159 * 300.00372 * 1 2 3 27 27 H 1.09000 * 109.46834 * 60.00543 * 1 2 3 28 28 H 1.09002 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99763 * 0.25258 * 5 4 2 30 30 H 1.08000 * 119.99268 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.99827 * 179.97438 * 7 6 5 32 32 H 1.08003 * 119.99514 * 179.97438 * 8 7 6 33 33 H 1.07994 * 119.99998 * 0.08933 * 9 4 2 34 34 H 1.09002 * 109.47135 * 89.03029 * 11 10 2 35 35 H 1.09003 * 109.46902 * 209.01882 * 11 10 2 36 36 H 1.08993 * 109.47704 * 329.02806 * 11 10 2 37 37 H 0.96998 * 119.99726 * 0.02562 * 14 12 10 38 38 H 1.08999 * 109.46988 * 300.00324 * 15 14 12 39 39 H 1.09003 * 109.46726 * 60.00084 * 15 14 12 40 40 H 1.08999 * 109.47499 * 300.00069 * 16 15 14 41 41 H 1.09003 * 109.47202 * 60.00434 * 16 15 14 42 42 H 1.09006 * 109.47207 * 300.00062 * 17 16 15 43 43 H 1.08999 * 109.47264 * 60.00005 * 17 16 15 44 44 H 0.96996 * 120.00003 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 6 1.7784 -2.0583 -1.4024 6 6 2.2387 -2.7098 -2.5314 7 6 2.9527 -2.0133 -3.4886 8 6 3.2057 -0.6652 -3.3170 9 6 2.7456 -0.0137 -2.1880 10 7 2.0184 -0.6905 1.1962 11 6 1.5566 -2.0476 1.4983 12 6 2.8924 -0.0773 2.0187 13 8 3.2753 1.0492 1.7682 14 7 3.3413 -0.7124 3.1194 15 6 4.2918 -0.0460 4.0132 16 6 4.6365 -0.9775 5.1769 17 6 5.6287 -0.2814 6.1107 18 6 5.9688 -1.1990 7.2566 19 1 5.5223 -2.1808 7.3131 20 6 6.8500 -0.7853 8.2331 21 7 7.1464 -1.5860 9.2334 22 14 7.6229 0.9124 8.1351 23 1 6.7617 1.8903 8.8475 24 1 8.9659 0.8822 8.7680 25 1 7.7555 1.3146 6.7117 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2164 -2.6013 -0.6570 30 1 2.0406 -3.7630 -2.6655 31 1 3.3126 -2.5225 -4.3703 32 1 3.7638 -0.1212 -4.0646 33 1 2.9440 1.0393 -2.0536 34 1 2.2143 -2.7709 1.0163 35 1 1.5721 -2.2050 2.5768 36 1 0.5402 -2.1767 1.1267 37 1 3.0355 -1.6109 3.3195 38 1 5.1995 0.1980 3.4614 39 1 3.8451 0.8695 4.4011 40 1 3.7286 -1.2211 5.7286 41 1 5.0830 -1.8933 4.7894 42 1 6.5368 -0.0374 5.5592 43 1 5.1819 0.6342 6.4982 44 1 7.7666 -1.2951 9.9200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:52 Heat of formation + Delta-G solvation = -7.850761 kcal Electronic energy + Delta-G solvation = -22545.210935 eV Core-core repulsion = 19269.433202 eV Total energy + Delta-G solvation = -3275.777733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59192 -39.22477 -36.45085 -35.37068 -33.52891 -32.44133 -31.24428 -31.02049 -29.49096 -27.43181 -26.93387 -23.98819 -22.88484 -22.67559 -21.18721 -20.52768 -19.47213 -18.08617 -17.15651 -16.75759 -16.47801 -15.85249 -15.41596 -15.04927 -14.60716 -14.52752 -14.11677 -14.02223 -13.77024 -13.56120 -13.42928 -12.83044 -12.70057 -12.55813 -12.48335 -12.35630 -11.99973 -11.86176 -11.68838 -11.24538 -11.07970 -11.02242 -10.87754 -10.21595 -9.98694 -9.80658 -9.66749 -9.21692 -9.15452 -9.01292 -8.99409 -8.57416 -8.54350 -6.05516 -4.04082 1.06323 1.16543 2.65428 3.28064 3.32461 3.39916 3.44810 3.57014 4.02964 4.39340 4.45581 4.59520 4.74469 4.79666 4.85530 4.90575 5.00563 5.17929 5.25504 5.28796 5.29445 5.36016 5.47222 5.54772 5.64220 5.71134 5.71362 5.79881 5.85723 6.05706 6.21053 6.26255 6.30294 6.34279 6.45644 6.48624 6.71757 6.75342 6.84205 6.95469 7.24830 7.38273 7.76675 8.01729 8.51089 8.68011 8.98302 9.56905 11.07763 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.002689 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.836864 B =10409.188206 C =10466.562949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.192 3.808 3 H 0.110 0.890 4 C -0.093 4.093 5 C -0.113 4.113 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.120 4.120 9 C -0.105 4.105 10 N -0.627 5.627 11 C 0.071 3.929 12 C 0.705 3.295 13 O -0.592 6.592 14 N -0.740 5.740 15 C 0.132 3.868 16 C -0.112 4.112 17 C -0.011 4.011 18 C -0.521 4.521 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.395 0.605 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -1.422 -25.104 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.088 3.912 3 H 0.128 0.872 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.123 4.123 10 N -0.365 5.365 11 C -0.072 4.072 12 C 0.406 3.594 13 O -0.470 6.470 14 N -0.396 5.396 15 C 0.008 3.992 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.188 1.188 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.411 -0.594 -25.074 28.927 hybrid contribution 0.387 0.203 0.188 0.476 sum -14.024 -0.391 -24.886 28.568 Atomic orbital electron populations 1.22154 0.94068 1.02501 1.02825 1.19775 0.93742 0.97108 0.80556 0.87236 1.20210 0.98646 0.94539 0.96010 1.21214 1.00117 0.94184 0.97639 1.21144 0.98692 0.99836 0.94391 1.21166 0.98963 0.94605 0.99252 1.21153 1.00013 0.94873 0.97814 1.21108 0.97115 1.00221 0.93864 1.47024 1.47626 1.16541 1.25294 1.21881 1.00335 0.83608 1.01383 1.15908 0.79124 0.84325 0.80032 1.90889 1.62421 1.18316 1.75416 1.45478 1.49193 1.19744 1.25154 1.21522 0.91144 0.96253 0.90242 1.21700 1.00553 0.98196 0.94605 1.19498 0.94182 0.96351 0.94839 1.21100 1.26434 1.02398 1.06012 0.91031 1.25026 0.96128 0.97277 0.95059 1.69909 1.35464 1.36525 1.12364 0.86775 0.78746 0.84899 0.78885 1.20239 1.21391 1.18848 0.91609 0.91127 0.92081 0.85739 0.86138 0.86235 0.86052 0.85850 0.92421 0.91145 0.90598 0.76965 0.91985 0.91963 0.92198 0.92174 0.96281 0.96706 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.89 37.16 0.33 -0.90 16 2 C 0.19 2.01 2.95 -69.08 -0.20 1.81 16 3 H 0.11 1.37 6.66 -51.93 -0.35 1.02 16 4 C -0.09 -0.93 4.96 -104.62 -0.52 -1.45 16 5 C -0.11 -0.99 8.14 -39.58 -0.32 -1.32 16 6 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 7 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 8 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 9 C -0.10 -1.05 9.67 -39.58 -0.38 -1.43 16 10 N -0.63 -7.24 2.75 -181.01 -0.50 -7.74 16 11 C 0.07 0.57 8.11 59.85 0.49 1.05 16 12 C 0.70 10.95 8.28 -86.92 -0.72 10.23 16 13 O -0.59 -11.46 15.68 5.29 0.08 -11.38 16 14 N -0.74 -10.85 5.42 -65.23 -0.35 -11.20 16 15 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 16 C -0.11 -2.13 5.27 -26.74 -0.14 -2.27 16 17 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 18 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 19 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 22 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.40 6.03 -51.93 -0.31 0.08 16 29 H 0.12 0.88 4.98 -52.49 -0.26 0.61 16 30 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.12 1.16 7.95 -52.49 -0.42 0.74 16 34 H 0.06 0.44 7.10 -51.93 -0.37 0.07 16 35 H 0.07 0.52 6.31 -51.93 -0.33 0.19 16 36 H 0.08 0.45 5.45 -51.93 -0.28 0.16 16 37 H 0.39 4.74 6.18 -40.82 -0.25 4.49 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -34.12 352.05 -9.32 -43.43 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.73 Total: 1.38 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.23 Total: -9.93 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.08 Total: -46.04 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.12 -9.32 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.584 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds