Wall clock time and date at job start Tue Mar 31 2020 07:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46646 * 2 1 4 4 C 1.50694 * 109.47322 * 240.00175 * 2 1 3 5 5 C 1.38246 * 119.99722 * 295.41491 * 4 2 1 6 6 C 1.38236 * 119.99686 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00275 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99619 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00282 * 115.32353 * 4 2 1 10 10 N 1.46498 * 109.47331 * 119.99374 * 2 1 3 11 11 C 1.46504 * 119.99322 * 53.83445 * 10 2 1 12 12 C 1.34771 * 120.00431 * 233.83475 * 10 2 1 13 13 O 1.21583 * 119.99983 * 0.02562 * 12 10 2 14 14 N 1.34777 * 120.00069 * 179.97438 * 12 10 2 15 15 C 1.46500 * 120.00078 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47126 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47083 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47458 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99634 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00432 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00086 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99879 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47332 * 89.99941 * 22 20 18 24 24 H 1.48502 * 109.47074 * 210.00435 * 22 20 18 25 25 H 1.48503 * 109.47363 * 330.00173 * 22 20 18 26 26 H 1.08993 * 109.47159 * 300.00372 * 1 2 3 27 27 H 1.09000 * 109.46834 * 60.00543 * 1 2 3 28 28 H 1.09002 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99763 * 0.25258 * 5 4 2 30 30 H 1.08000 * 119.99268 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.99827 * 179.97438 * 7 6 5 32 32 H 1.08003 * 119.99514 * 179.97438 * 8 7 6 33 33 H 1.07994 * 119.99998 * 0.08933 * 9 4 2 34 34 H 1.09002 * 109.47135 * 89.03029 * 11 10 2 35 35 H 1.09003 * 109.46902 * 209.01882 * 11 10 2 36 36 H 1.08993 * 109.47704 * 329.02806 * 11 10 2 37 37 H 0.96998 * 119.99726 * 0.02562 * 14 12 10 38 38 H 1.08999 * 109.46988 * 300.00324 * 15 14 12 39 39 H 1.09003 * 109.46726 * 60.00084 * 15 14 12 40 40 H 1.08999 * 109.47499 * 300.00069 * 16 15 14 41 41 H 1.09003 * 109.47202 * 60.00434 * 16 15 14 42 42 H 1.09006 * 109.47207 * 300.00062 * 17 16 15 43 43 H 1.08999 * 109.47264 * 60.00005 * 17 16 15 44 44 H 0.96996 * 120.00003 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 6 1.7784 -2.0583 -1.4024 6 6 2.2387 -2.7098 -2.5314 7 6 2.9527 -2.0133 -3.4886 8 6 3.2057 -0.6652 -3.3170 9 6 2.7456 -0.0137 -2.1880 10 7 2.0184 -0.6905 1.1962 11 6 1.5566 -2.0476 1.4983 12 6 2.8924 -0.0773 2.0187 13 8 3.2753 1.0492 1.7682 14 7 3.3413 -0.7124 3.1194 15 6 4.2918 -0.0460 4.0132 16 6 4.6365 -0.9775 5.1769 17 6 5.6287 -0.2814 6.1107 18 6 5.9688 -1.1990 7.2566 19 1 5.5223 -2.1808 7.3131 20 6 6.8500 -0.7853 8.2331 21 7 7.1464 -1.5860 9.2334 22 14 7.6229 0.9124 8.1351 23 1 6.7617 1.8903 8.8475 24 1 8.9659 0.8822 8.7680 25 1 7.7555 1.3146 6.7117 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2164 -2.6013 -0.6570 30 1 2.0406 -3.7630 -2.6655 31 1 3.3126 -2.5225 -4.3703 32 1 3.7638 -0.1212 -4.0646 33 1 2.9440 1.0393 -2.0536 34 1 2.2143 -2.7709 1.0163 35 1 1.5721 -2.2050 2.5768 36 1 0.5402 -2.1767 1.1267 37 1 3.0355 -1.6109 3.3195 38 1 5.1995 0.1980 3.4614 39 1 3.8451 0.8695 4.4011 40 1 3.7286 -1.2211 5.7286 41 1 5.0830 -1.8933 4.7894 42 1 6.5368 -0.0374 5.5592 43 1 5.1819 0.6342 6.4982 44 1 7.7666 -1.2951 9.9200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170887064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:51 Heat of formation + Delta-G solvation = -28.576756 kcal Electronic energy + Delta-G solvation = -22546.109681 eV Core-core repulsion = 19269.433202 eV Total energy + Delta-G solvation = -3276.676480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57243 -40.06905 -37.47646 -36.76269 -35.23783 -33.79808 -32.57994 -31.80862 -30.18996 -28.84255 -28.00615 -25.11930 -24.13645 -23.41326 -22.23517 -22.07759 -20.54311 -19.26359 -18.77032 -17.87812 -17.48220 -16.94246 -16.40526 -16.23228 -15.91003 -15.77421 -15.26085 -14.99430 -14.75727 -14.68204 -14.48181 -14.22618 -13.81229 -13.64169 -13.46817 -13.23835 -13.15450 -12.99369 -12.72013 -12.66238 -12.37709 -11.95586 -11.88571 -11.79683 -11.72539 -11.59735 -11.32975 -11.19625 -10.75928 -10.23094 -9.81117 -9.68632 -9.55163 -8.29258 -6.32894 0.38232 0.50730 1.37038 1.38756 1.50698 1.64649 2.09798 2.36654 2.84599 3.05613 3.06602 3.66271 3.92800 4.08600 4.13487 4.16320 4.20886 4.21981 4.28843 4.32538 4.50079 4.56842 4.64026 4.66611 4.75087 4.84042 4.87833 4.89653 4.96604 5.03848 5.08021 5.15793 5.22981 5.40818 5.47703 5.53084 5.55948 5.56958 5.62812 5.64037 5.67444 5.94225 6.11707 6.27758 6.74832 6.93651 7.31927 7.51689 8.87150 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.002689 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.836864 B =10409.188206 C =10466.562949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.190 3.810 3 H 0.080 0.920 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.127 4.127 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.127 4.127 10 N -0.620 5.620 11 C 0.062 3.938 12 C 0.698 3.302 13 O -0.638 6.638 14 N -0.732 5.732 15 C 0.146 3.854 16 C -0.098 4.098 17 C -0.012 4.012 18 C -0.529 4.529 19 H 0.039 0.961 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.946 3.054 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.249 1.249 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.409 0.591 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -1.922 -26.759 31.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.086 3.914 3 H 0.098 0.902 4 C -0.107 4.107 5 C -0.135 4.135 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.148 4.148 9 C -0.146 4.146 10 N -0.356 5.356 11 C -0.080 4.080 12 C 0.399 3.601 13 O -0.519 6.519 14 N -0.389 5.389 15 C 0.021 3.979 16 C -0.136 4.136 17 C -0.050 4.050 18 C -0.568 4.568 19 H 0.057 0.943 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.173 1.173 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.247 0.753 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.494 -1.141 -26.760 30.943 hybrid contribution 0.665 0.251 0.650 0.963 sum -14.829 -0.890 -26.109 30.040 Atomic orbital electron populations 1.22099 0.91788 1.03804 1.02997 1.19821 0.95387 0.95655 0.80495 0.90199 1.20215 0.99395 0.95341 0.95754 1.21440 1.00130 0.93554 0.98375 1.21498 0.97979 1.01046 0.93924 1.21504 0.98561 0.94372 1.00077 1.21389 1.00087 0.95573 0.97749 1.21245 0.98131 1.00312 0.94894 1.47085 1.46194 1.17662 1.24624 1.22178 1.01975 0.81544 1.02278 1.16110 0.79581 0.83962 0.80420 1.90856 1.64157 1.20439 1.76496 1.45210 1.48726 1.20252 1.24722 1.21148 0.91303 0.95615 0.89798 1.21463 0.99629 0.98099 0.94390 1.19459 0.95467 0.95911 0.94127 1.21455 1.25875 1.01908 1.07517 0.94301 1.25964 0.96899 1.01609 0.94685 1.70050 1.36675 1.38862 1.13503 0.85713 0.77847 0.79718 0.79735 1.19195 1.21010 1.17259 0.92179 0.90236 0.90111 0.83862 0.83764 0.84126 0.84720 0.86578 0.91500 0.90360 0.87904 0.75283 0.93040 0.92649 0.91570 0.91801 0.96202 0.96167 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.89 71.98 0.64 -1.43 16 2 C 0.19 3.88 2.95 44.25 0.13 4.01 16 3 H 0.08 2.10 6.66 -2.39 -0.02 2.09 16 4 C -0.11 -2.03 4.96 -19.87 -0.10 -2.12 16 5 C -0.12 -1.76 8.14 22.27 0.18 -1.58 16 6 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 7 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 8 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 9 C -0.13 -2.56 9.67 22.27 0.22 -2.34 16 10 N -0.62 -13.52 2.75 -844.85 -2.33 -15.84 16 11 C 0.06 0.81 8.11 127.77 1.04 1.85 16 12 C 0.70 21.35 8.28 179.06 1.48 22.84 16 13 O -0.64 -25.16 15.68 -3.98 -0.06 -25.22 16 14 N -0.73 -20.59 5.42 -478.55 -2.60 -23.19 16 15 C 0.15 4.90 5.67 86.38 0.49 5.39 16 16 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 17 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 18 C -0.53 -30.21 9.66 25.60 0.25 -29.96 16 19 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 20 C 0.01 0.31 5.47 84.66 0.46 0.77 16 21 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 22 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.79 6.03 -2.39 -0.01 0.78 16 29 H 0.14 1.50 4.98 -2.91 -0.01 1.49 16 30 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.12 2.35 7.95 -2.91 -0.02 2.33 16 34 H 0.07 0.80 7.10 -2.39 -0.02 0.78 16 35 H 0.08 0.93 6.31 -2.39 -0.02 0.91 16 36 H 0.10 0.81 5.45 -2.39 -0.01 0.80 16 37 H 0.41 9.02 6.18 -92.71 -0.57 8.44 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.02 0.91 7.20 -2.38 -0.02 0.90 16 43 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -74.95 352.05 3.31 -71.65 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.36 Total: 16.72 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 5.74 Total: -11.52 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.62 Total: -98.27 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.06 Total: -25.22 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -74.95 3.31 -71.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.068 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds