Wall clock time and date at job start Tue Mar 31 2020 08:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47538 * 2 1 4 4 C 1.50699 * 109.47143 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99994 * 119.99845 * 4 2 1 6 6 C 1.37878 * 120.00193 * 300.00005 * 4 2 1 7 7 N 1.31517 * 120.00270 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 90.00289 * 8 6 4 10 10 H 1.48499 * 109.47267 * 209.99937 * 8 6 4 11 11 H 1.48498 * 109.47277 * 330.00408 * 8 6 4 12 12 N 1.46500 * 109.47128 * 239.99829 * 2 1 3 13 13 C 1.46506 * 120.00367 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99884 * 119.99743 * 12 2 1 15 15 O 1.21554 * 119.99595 * 4.35499 * 14 12 2 16 16 C 1.47845 * 119.99967 * 184.34569 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.31836 * 16 14 12 18 18 C 1.37937 * 119.85564 * 179.74463 * 17 16 14 19 19 C 1.38383 * 120.14258 * 0.52849 * 18 17 16 20 20 C 1.38343 * 120.29169 * 359.74979 * 19 18 17 21 21 C 1.50702 * 119.92692 * 179.97438 * 20 19 18 22 22 N 1.46892 * 109.47208 * 269.97619 * 21 20 19 23 23 C 1.46894 * 111.00180 * 170.00160 * 22 21 20 24 24 C 1.46909 * 110.99940 * 293.95502 * 22 21 20 25 25 C 1.37976 * 120.14560 * 359.97019 * 20 19 18 26 26 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46709 * 299.99890 * 1 2 3 28 28 H 1.08997 * 109.46903 * 60.00221 * 1 2 3 29 29 H 0.96996 * 119.99951 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.46609 * 271.72163 * 13 12 2 31 31 H 1.08996 * 109.46926 * 151.72048 * 13 12 2 32 32 H 1.09000 * 109.46827 * 31.71702 * 13 12 2 33 33 H 1.08005 * 120.07660 * 359.97438 * 17 16 14 34 34 H 1.07993 * 119.92919 * 180.27830 * 18 17 16 35 35 H 1.07997 * 119.85525 * 179.76023 * 19 18 17 36 36 H 1.08997 * 109.46867 * 29.97575 * 21 20 19 37 37 H 1.08998 * 109.46765 * 149.97104 * 21 20 19 38 38 H 1.08997 * 109.47694 * 59.99854 * 23 22 21 39 39 H 1.09000 * 109.47152 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.46978 * 299.99456 * 23 22 21 41 41 H 1.09001 * 109.46855 * 60.00043 * 24 22 21 42 42 H 1.08999 * 109.46964 * 180.02562 * 24 22 21 43 43 H 1.08998 * 109.46914 * 299.99736 * 24 22 21 44 44 H 1.07995 * 120.07660 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5566 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0933 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1522 1.1026 -1.8527 16 6 3.2066 -0.7015 -3.3369 17 6 3.5666 -2.0502 -3.3286 18 6 3.9463 -2.6668 -4.5026 19 6 3.9813 -1.9486 -5.6850 20 6 3.6313 -0.6103 -5.6991 21 6 3.6730 0.1642 -6.9912 22 7 5.0035 0.7633 -7.1603 23 6 5.1608 1.3241 -8.5089 24 6 5.2560 1.7830 -6.1334 25 6 3.2442 0.0171 -4.5328 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9035 -0.5281 4.4375 30 1 2.3991 -2.7378 -0.9457 31 1 1.6537 -2.2928 -2.4996 32 1 0.6771 -2.2924 -1.0114 33 1 3.5443 -2.6107 -2.4057 34 1 4.2207 -3.7113 -4.4984 35 1 4.2830 -2.4351 -6.6008 36 1 3.4687 -0.5082 -7.8245 37 1 2.9201 0.9519 -6.9671 38 1 4.4073 2.0945 -8.6723 39 1 6.1543 1.7616 -8.6068 40 1 5.0375 0.5326 -9.2481 41 1 5.2019 1.3251 -5.1457 42 1 6.2475 2.2107 -6.2822 43 1 4.5060 2.5701 -6.2107 44 1 2.9708 1.0618 -4.5451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:25 Heat of formation + Delta-G solvation = 15.452501 kcal Electronic energy + Delta-G solvation = -23356.049822 eV Core-core repulsion = 20081.282594 eV Total energy + Delta-G solvation = -3274.767228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.15471 -38.61169 -36.97276 -35.57048 -33.03671 -31.85522 -31.13518 -29.98803 -27.73693 -27.00393 -26.30435 -25.16766 -23.82245 -22.61943 -21.49760 -20.66547 -18.62074 -17.03568 -16.47919 -16.27032 -15.87657 -15.68443 -15.46672 -15.09484 -14.83887 -14.59451 -14.06792 -13.71533 -13.13465 -13.07563 -12.83885 -12.58849 -12.51009 -12.38056 -12.27218 -12.20655 -11.86666 -11.76837 -11.73602 -11.57639 -11.29782 -11.15667 -10.92618 -10.64227 -10.14628 -9.68038 -9.36770 -9.16384 -8.89671 -8.72056 -8.64038 -8.49860 -7.75614 -6.15279 -4.15976 1.11752 1.35251 3.19521 3.22638 3.36342 3.38738 3.69939 3.77182 4.09558 4.34457 4.60464 4.78819 4.89854 4.96996 5.09244 5.12715 5.15322 5.17973 5.29740 5.37237 5.44683 5.50602 5.57784 5.58756 5.68123 5.88404 5.91211 5.95914 6.02415 6.18690 6.23851 6.30543 6.38533 6.46329 6.47634 6.51518 6.75520 6.79133 6.82045 6.93567 7.11309 7.31432 7.61156 8.14798 8.44781 8.81649 8.87887 9.45477 10.97500 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.003758 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.529703 B = 7448.536674 C = 7978.279196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.579 5.579 13 C 0.079 3.921 14 C 0.547 3.453 15 O -0.547 6.547 16 C -0.116 4.116 17 C -0.090 4.090 18 C -0.129 4.129 19 C -0.084 4.084 20 C -0.092 4.092 21 C 0.096 3.904 22 N -0.543 5.543 23 C 0.024 3.976 24 C 0.017 3.983 25 C -0.064 4.064 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.266 0.734 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -1.761 -22.227 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.128 3.872 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.309 5.309 13 C -0.064 4.064 14 C 0.334 3.666 15 O -0.427 6.427 16 C -0.119 4.119 17 C -0.109 4.109 18 C -0.147 4.147 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.032 4.032 22 N -0.266 5.266 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.083 4.083 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.920 -1.528 -21.818 21.955 hybrid contribution -1.174 1.261 0.301 1.749 sum 0.747 -0.267 -21.517 21.532 Atomic orbital electron populations 1.22467 0.99033 1.01164 0.99318 1.19318 0.89962 0.95221 0.82741 0.91917 1.21144 1.32720 1.14244 0.88426 0.90315 1.24862 0.95677 0.96565 0.95609 1.69871 1.45160 1.40219 0.97969 0.86918 0.80403 0.83874 0.77522 1.20379 1.22087 1.18820 1.47789 1.48701 1.11863 1.22551 1.21965 1.01718 0.82686 1.00081 1.18303 0.79155 0.85944 0.83212 1.90731 1.55712 1.18615 1.77616 1.20076 1.03086 0.94505 0.94253 1.21714 0.96403 0.93557 0.99216 1.21085 1.01010 1.00176 0.92419 1.21082 0.97551 0.93510 0.98158 1.19559 1.00974 0.94390 0.94346 1.21037 0.89589 0.97336 0.95201 1.62010 1.28356 1.32961 1.03313 1.22389 1.01236 0.98741 0.90029 1.22514 1.00730 0.93310 0.96502 1.21036 0.97115 0.99374 0.90806 0.92430 0.93039 0.94794 0.92415 0.92474 0.91663 0.90980 0.84488 0.85549 0.85949 0.89865 0.93833 0.95685 0.91268 0.91384 0.90342 0.91394 0.95490 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.65 37.16 0.32 -3.18 16 2 C 0.23 5.60 2.23 -69.08 -0.15 5.44 16 3 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 4 C -0.53 -14.67 8.95 -34.44 -0.31 -14.98 16 5 H 0.08 2.35 7.85 -52.48 -0.41 1.94 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 8 Si 0.88 21.92 24.37 -169.99 -4.14 17.77 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.58 -12.18 2.75 -176.37 -0.49 -12.66 16 13 C 0.08 1.31 8.14 59.85 0.49 1.79 16 14 C 0.55 11.44 7.35 -12.33 -0.09 11.35 16 15 O -0.55 -13.46 16.25 5.32 0.09 -13.37 16 16 C -0.12 -1.91 5.22 -104.97 -0.55 -2.45 16 17 C -0.09 -1.25 7.46 -39.19 -0.29 -1.54 16 18 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 19 C -0.08 -0.91 9.69 -39.49 -0.38 -1.30 16 20 C -0.09 -1.10 4.88 -104.68 -0.51 -1.61 16 21 C 0.10 0.95 5.11 -4.98 -0.03 0.92 16 22 N -0.54 -5.61 5.01 -252.73 -1.27 -6.87 16 23 C 0.02 0.19 9.57 60.06 0.57 0.76 16 24 C 0.02 0.19 9.14 60.07 0.55 0.74 16 25 C -0.06 -0.93 7.54 -39.18 -0.30 -1.22 16 26 H 0.06 1.15 6.67 -51.93 -0.35 0.80 16 27 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.06 0.94 7.23 -51.93 -0.38 0.56 16 31 H 0.06 0.89 5.37 -51.93 -0.28 0.62 16 32 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 33 H 0.14 1.85 5.55 -52.48 -0.29 1.56 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 37 H 0.04 0.43 8.06 -51.93 -0.42 0.01 16 38 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16 42 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.12 1.85 8.03 -52.49 -0.42 1.42 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -32.92 344.07 -7.67 -40.59 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.65 Total: 0.64 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.17 Total: -5.04 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.98 Total: -45.77 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.92 -7.67 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.041 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds