Wall clock time and date at job start Tue Mar 31 2020 08:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47538 * 2 1 4 4 C 1.50699 * 109.47143 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99994 * 119.99845 * 4 2 1 6 6 C 1.37878 * 120.00193 * 300.00005 * 4 2 1 7 7 N 1.31517 * 120.00270 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47024 * 90.00289 * 8 6 4 10 10 H 1.48499 * 109.47267 * 209.99937 * 8 6 4 11 11 H 1.48498 * 109.47277 * 330.00408 * 8 6 4 12 12 N 1.46500 * 109.47128 * 239.99829 * 2 1 3 13 13 C 1.46506 * 120.00367 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99884 * 119.99743 * 12 2 1 15 15 O 1.21554 * 119.99595 * 4.35499 * 14 12 2 16 16 C 1.47845 * 119.99967 * 184.34569 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.31836 * 16 14 12 18 18 C 1.37937 * 119.85564 * 179.74463 * 17 16 14 19 19 C 1.38383 * 120.14258 * 0.52849 * 18 17 16 20 20 C 1.38343 * 120.29169 * 359.74979 * 19 18 17 21 21 C 1.50702 * 119.92692 * 179.97438 * 20 19 18 22 22 N 1.46892 * 109.47208 * 269.97619 * 21 20 19 23 23 C 1.46894 * 111.00180 * 170.00160 * 22 21 20 24 24 C 1.46909 * 110.99940 * 293.95502 * 22 21 20 25 25 C 1.37976 * 120.14560 * 359.97019 * 20 19 18 26 26 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46709 * 299.99890 * 1 2 3 28 28 H 1.08997 * 109.46903 * 60.00221 * 1 2 3 29 29 H 0.96996 * 119.99951 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.46609 * 271.72163 * 13 12 2 31 31 H 1.08996 * 109.46926 * 151.72048 * 13 12 2 32 32 H 1.09000 * 109.46827 * 31.71702 * 13 12 2 33 33 H 1.08005 * 120.07660 * 359.97438 * 17 16 14 34 34 H 1.07993 * 119.92919 * 180.27830 * 18 17 16 35 35 H 1.07997 * 119.85525 * 179.76023 * 19 18 17 36 36 H 1.08997 * 109.46867 * 29.97575 * 21 20 19 37 37 H 1.08998 * 109.46765 * 149.97104 * 21 20 19 38 38 H 1.08997 * 109.47694 * 59.99854 * 23 22 21 39 39 H 1.09000 * 109.47152 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.46978 * 299.99456 * 23 22 21 41 41 H 1.09001 * 109.46855 * 60.00043 * 24 22 21 42 42 H 1.08999 * 109.46964 * 180.02562 * 24 22 21 43 43 H 1.08998 * 109.46914 * 299.99736 * 24 22 21 44 44 H 1.07995 * 120.07660 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5566 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0933 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1522 1.1026 -1.8527 16 6 3.2066 -0.7015 -3.3369 17 6 3.5666 -2.0502 -3.3286 18 6 3.9463 -2.6668 -4.5026 19 6 3.9813 -1.9486 -5.6850 20 6 3.6313 -0.6103 -5.6991 21 6 3.6730 0.1642 -6.9912 22 7 5.0035 0.7633 -7.1603 23 6 5.1608 1.3241 -8.5089 24 6 5.2560 1.7830 -6.1334 25 6 3.2442 0.0171 -4.5328 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9035 -0.5281 4.4375 30 1 2.3991 -2.7378 -0.9457 31 1 1.6537 -2.2928 -2.4996 32 1 0.6771 -2.2924 -1.0114 33 1 3.5443 -2.6107 -2.4057 34 1 4.2207 -3.7113 -4.4984 35 1 4.2830 -2.4351 -6.6008 36 1 3.4687 -0.5082 -7.8245 37 1 2.9201 0.9519 -6.9671 38 1 4.4073 2.0945 -8.6723 39 1 6.1543 1.7616 -8.6068 40 1 5.0375 0.5326 -9.2481 41 1 5.2019 1.3251 -5.1457 42 1 6.2475 2.2107 -6.2822 43 1 4.5060 2.5701 -6.2107 44 1 2.9708 1.0618 -4.5451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:24 Heat of formation + Delta-G solvation = -7.412652 kcal Electronic energy + Delta-G solvation = -23357.041330 eV Core-core repulsion = 20081.282594 eV Total energy + Delta-G solvation = -3275.758735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47365 -39.85567 -37.87086 -37.35115 -34.91166 -33.27441 -32.27674 -31.50436 -28.51336 -28.10308 -27.51988 -27.20000 -25.19322 -23.49371 -22.74476 -21.94744 -20.16640 -18.95227 -17.91399 -17.73971 -17.19874 -16.70615 -16.60732 -16.39030 -15.96450 -15.80762 -15.33341 -15.04177 -14.84294 -14.50263 -14.18770 -14.13773 -13.80716 -13.57881 -13.51344 -13.22976 -13.18802 -13.03561 -12.82695 -12.70559 -12.52907 -12.49560 -12.33668 -12.08505 -11.84642 -11.61545 -11.39106 -10.83725 -10.79657 -9.91198 -9.75992 -9.46663 -9.30825 -8.37843 -6.42793 0.01636 0.36366 1.23433 1.33427 1.42094 1.78461 2.18159 2.25245 2.70634 2.97078 3.22888 3.55871 3.75015 3.94341 4.08993 4.22678 4.27745 4.32654 4.39538 4.42466 4.44231 4.53304 4.55115 4.57329 4.61241 4.68801 4.73874 4.77795 4.87053 4.91864 5.01404 5.01832 5.04711 5.05940 5.26037 5.40757 5.43305 5.47074 5.57117 5.65452 5.95545 5.98063 6.09564 6.16698 6.57306 6.63690 7.14293 7.28057 8.78258 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.003758 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.529703 B = 7448.536674 C = 7978.279196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.231 3.769 3 H 0.029 0.971 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.941 3.059 9 H -0.250 1.250 10 H -0.294 1.294 11 H -0.265 1.265 12 N -0.587 5.587 13 C 0.078 3.922 14 C 0.539 3.461 15 O -0.599 6.599 16 C -0.141 4.141 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.071 4.071 20 C -0.089 4.089 21 C 0.096 3.904 22 N -0.552 5.552 23 C 0.024 3.976 24 C 0.021 3.979 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 -2.980 -25.495 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.127 3.873 3 H 0.047 0.953 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.768 3.232 9 H -0.175 1.175 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.316 5.316 13 C -0.063 4.063 14 C 0.329 3.671 15 O -0.482 6.482 16 C -0.144 4.144 17 C -0.116 4.116 18 C -0.135 4.135 19 C -0.089 4.089 20 C -0.089 4.089 21 C -0.031 4.031 22 N -0.276 5.276 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.091 4.091 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.129 0.871 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.201 -2.787 -25.116 25.299 hybrid contribution -0.820 1.568 1.208 2.143 sum 0.381 -1.218 -23.908 23.942 Atomic orbital electron populations 1.22320 0.96298 1.02530 1.00036 1.19010 0.91995 0.93349 0.82899 0.95263 1.21336 1.31936 1.13212 0.90167 0.93635 1.25640 0.97133 0.99473 0.95243 1.69995 1.46969 1.42147 0.98608 0.85982 0.80028 0.80110 0.77120 1.17522 1.22126 1.18943 1.47855 1.48702 1.13466 1.21547 1.22174 1.01708 0.80094 1.02369 1.19100 0.78078 0.85497 0.84425 1.90680 1.57595 1.21017 1.78923 1.19775 1.06346 0.95820 0.92480 1.21756 0.96938 0.92353 1.00514 1.21448 0.99146 1.01677 0.91224 1.21526 0.95274 0.92776 0.99372 1.19802 0.99812 0.95211 0.94106 1.21112 0.89460 0.97627 0.94914 1.62025 1.28486 1.32866 1.04192 1.22460 1.01658 0.99437 0.88816 1.22428 1.01270 0.93401 0.95689 1.20992 0.97998 0.98752 0.91399 0.90764 0.93680 0.92584 0.92155 0.92700 0.88311 0.90507 0.84654 0.82063 0.82411 0.87108 0.94124 0.95410 0.90784 0.89636 0.92981 0.90513 0.95664 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.51 8.65 71.98 0.62 -5.89 16 2 C 0.23 11.53 2.23 44.25 0.10 11.62 16 3 H 0.03 1.66 5.96 -2.39 -0.01 1.65 16 4 C -0.53 -30.42 8.95 25.60 0.23 -30.19 16 5 H 0.05 2.85 7.85 -2.91 -0.02 2.83 16 6 C 0.02 1.41 5.45 84.65 0.46 1.87 16 7 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 8 Si 0.94 45.72 24.37 68.60 1.67 47.39 16 9 H -0.25 -11.03 6.87 99.48 0.68 -10.35 16 10 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.26 -12.82 6.53 99.48 0.65 -12.17 16 12 N -0.59 -25.25 2.75 -830.20 -2.29 -27.54 16 13 C 0.08 2.57 8.14 127.77 1.04 3.61 16 14 C 0.54 23.49 7.35 86.79 0.64 24.12 16 15 O -0.60 -31.31 16.25 -3.89 -0.06 -31.37 16 16 C -0.14 -4.67 5.22 -20.09 -0.10 -4.77 16 17 C -0.10 -2.54 7.46 22.52 0.17 -2.37 16 18 C -0.12 -2.20 10.03 22.23 0.22 -1.97 16 19 C -0.07 -1.24 9.69 22.33 0.22 -1.03 16 20 C -0.09 -1.91 4.88 -19.90 -0.10 -2.01 16 21 C 0.10 1.64 5.11 85.56 0.44 2.07 16 22 N -0.55 -10.12 5.01 -953.50 -4.78 -14.89 16 23 C 0.02 0.30 9.57 127.69 1.22 1.52 16 24 C 0.02 0.44 9.14 127.69 1.17 1.61 16 25 C -0.07 -2.08 7.54 22.53 0.17 -1.91 16 26 H 0.07 2.85 6.67 -2.38 -0.02 2.84 16 27 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.05 1.81 7.23 -2.39 -0.02 1.79 16 31 H 0.10 2.56 5.37 -2.39 -0.01 2.55 16 32 H 0.08 2.42 6.43 -2.39 -0.02 2.40 16 33 H 0.14 3.53 5.55 -2.91 -0.02 3.51 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.11 1.30 8.01 -2.39 -0.02 1.28 16 37 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 38 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 40 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 41 H 0.05 1.39 6.16 -2.39 -0.01 1.38 16 42 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 43 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.11 3.40 8.03 -2.91 -0.02 3.37 16 Total: -1.00 -75.52 344.07 2.24 -73.27 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.91 Total: 14.73 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 6.49 Total: -3.71 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -6.76 Total: -100.32 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.06 Total: -31.37 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.39 kcal Total: -75.52 2.24 -73.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.862 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds