Wall clock time and date at job start Tue Mar 31 2020 08:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 C 1.50703 * 109.46889 * 240.00717 * 2 1 3 5 5 H 1.07996 * 119.99853 * 274.67430 * 4 2 1 6 6 C 1.37880 * 120.00052 * 94.39137 * 4 2 1 7 7 N 1.31511 * 119.99983 * 186.79219 * 6 4 2 8 8 Si 1.86795 * 119.99811 * 6.79685 * 6 4 2 9 9 H 1.48504 * 109.47376 * 87.41286 * 8 6 4 10 10 H 1.48508 * 109.46907 * 207.41197 * 8 6 4 11 11 H 1.48497 * 109.47268 * 327.40830 * 8 6 4 12 12 N 1.46503 * 109.47276 * 120.00828 * 2 1 3 13 13 C 1.46499 * 120.00109 * 59.99839 * 12 2 1 14 14 C 1.34772 * 119.99944 * 239.99603 * 12 2 1 15 15 O 1.21562 * 119.99806 * 4.95353 * 14 12 2 16 16 C 1.47847 * 120.00355 * 184.95425 * 14 12 2 17 17 C 1.39594 * 120.13891 * 21.81384 * 16 14 12 18 18 C 1.37936 * 119.85013 * 179.74874 * 17 16 14 19 19 C 1.38384 * 120.14540 * 0.53019 * 18 17 16 20 20 C 1.38338 * 120.29043 * 359.74570 * 19 18 17 21 21 C 1.50696 * 119.92729 * 179.97438 * 20 19 18 22 22 N 1.46901 * 109.47501 * 269.98193 * 21 20 19 23 23 C 1.46896 * 111.00226 * 170.00151 * 22 21 20 24 24 C 1.46905 * 110.99624 * 293.95240 * 22 21 20 25 25 C 1.37976 * 120.14421 * 359.97438 * 20 19 18 26 26 H 1.08997 * 109.47332 * 53.75822 * 1 2 3 27 27 H 1.08993 * 109.47400 * 173.76204 * 1 2 3 28 28 H 1.09002 * 109.46555 * 293.75732 * 1 2 3 29 29 H 0.96997 * 119.99895 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47017 * 84.21897 * 13 12 2 31 31 H 1.08998 * 109.46953 * 204.22328 * 13 12 2 32 32 H 1.09004 * 109.46844 * 324.22458 * 13 12 2 33 33 H 1.08001 * 120.07737 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.92806 * 180.27506 * 18 17 16 35 35 H 1.07999 * 119.85568 * 179.76620 * 19 18 17 36 36 H 1.09002 * 109.47191 * 29.98188 * 21 20 19 37 37 H 1.08996 * 109.47233 * 149.97882 * 21 20 19 38 38 H 1.09001 * 109.47605 * 59.99493 * 23 22 21 39 39 H 1.08998 * 109.47090 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.46739 * 299.99582 * 23 22 21 41 41 H 1.08996 * 109.46835 * 59.99927 * 24 22 21 42 42 H 1.08997 * 109.46884 * 179.97438 * 24 22 21 43 43 H 1.08998 * 109.47204 * 300.00160 * 24 22 21 44 44 H 1.08007 * 120.07209 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1404 -1.7848 -1.2275 6 6 2.3482 0.0112 -2.3623 7 7 2.6579 -0.6154 -3.4763 8 14 2.3366 1.8784 -2.3130 9 1 3.6639 2.3701 -1.8639 10 1 2.0459 2.4076 -3.6699 11 1 1.2906 2.3421 -1.3664 12 7 2.0184 -0.6908 1.1961 13 6 1.6645 -2.0934 1.4278 14 6 2.7933 -0.0359 2.0832 15 8 3.0129 1.1509 1.9386 16 6 3.3762 -0.7610 3.2323 17 6 3.5264 -2.1479 3.1829 18 6 4.0758 -2.8177 4.2563 19 6 4.4675 -2.1191 5.3848 20 6 4.3161 -0.7452 5.4424 21 6 4.7449 0.0073 6.6756 22 7 3.6187 0.0901 7.6152 23 6 4.0578 0.6038 8.9195 24 6 2.5328 0.9120 7.0642 25 6 3.7733 -0.0625 4.3734 26 1 -0.3634 0.6075 -0.8288 27 1 -0.3634 -1.0215 -0.1117 28 1 -0.3632 0.4140 0.9406 29 1 2.8806 -0.1078 -4.2724 30 1 2.3572 -2.7371 0.8858 31 1 1.7239 -2.3117 2.4940 32 1 0.6489 -2.2747 1.0757 33 1 3.2173 -2.6948 2.3043 34 1 4.1967 -3.8902 4.2176 35 1 4.8936 -2.6487 6.2240 36 1 5.5758 -0.5153 7.1496 37 1 5.0599 1.0127 6.3966 38 1 4.4820 1.6000 8.7936 39 1 3.2047 0.6545 9.5959 40 1 4.8129 -0.0625 9.3368 41 1 2.1793 0.4698 6.1328 42 1 1.7118 0.9563 7.7797 43 1 2.9017 1.9193 6.8711 44 1 3.6559 1.0102 4.4195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:32 Heat of formation + Delta-G solvation = 20.927889 kcal Electronic energy + Delta-G solvation = -23440.837982 eV Core-core repulsion = 20166.308185 eV Total energy + Delta-G solvation = -3274.529797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17394 -38.57062 -36.95227 -35.53750 -33.06079 -31.85809 -31.06555 -29.88572 -27.76083 -27.11791 -26.28985 -25.28956 -23.68557 -22.59741 -21.38091 -20.52866 -18.67180 -17.23630 -16.43672 -16.29019 -15.84231 -15.66606 -15.37344 -14.98260 -14.71560 -14.40868 -14.08195 -13.72767 -13.16552 -13.04984 -12.67613 -12.57463 -12.51577 -12.35889 -12.29107 -12.15772 -11.88440 -11.87065 -11.49677 -11.43304 -11.17974 -11.04808 -10.82949 -10.55900 -10.37622 -9.79453 -9.33168 -9.11741 -8.85780 -8.71038 -8.60496 -8.47517 -7.69315 -6.18913 -4.20725 1.11519 1.39829 3.25289 3.30495 3.37966 3.45358 3.75605 3.84756 4.16562 4.37385 4.63274 4.81874 4.91545 4.97428 5.11189 5.14837 5.17191 5.20957 5.30875 5.38286 5.43606 5.50317 5.58041 5.62119 5.69071 5.83700 5.93161 5.95971 6.06121 6.18984 6.30187 6.39852 6.44922 6.50286 6.55122 6.58461 6.74928 6.78870 6.92323 6.98006 7.09105 7.44829 7.61818 8.11788 8.46756 8.82456 8.89874 9.43909 10.92970 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.003979 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.508779 B = 7034.773073 C = 7459.358898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.222 3.778 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.580 5.580 13 C 0.069 3.931 14 C 0.545 3.455 15 O -0.556 6.556 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.132 4.132 19 C -0.083 4.083 20 C -0.095 4.095 21 C 0.095 3.905 22 N -0.542 5.542 23 C 0.024 3.976 24 C 0.018 3.982 25 C -0.060 4.060 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.267 0.733 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -2.729 21.329 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.121 3.879 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.310 5.310 13 C -0.074 4.074 14 C 0.333 3.667 15 O -0.436 6.436 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.150 4.150 19 C -0.101 4.101 20 C -0.096 4.096 21 C -0.032 4.032 22 N -0.266 5.266 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.420 -2.550 21.088 21.289 hybrid contribution 0.373 1.633 -0.329 1.707 sum 1.793 -0.917 20.758 20.856 Atomic orbital electron populations 1.22209 0.98274 1.00952 0.99140 1.19393 0.90947 0.95026 0.82485 0.91619 1.21110 1.44976 0.95781 0.94503 0.90377 1.24950 0.93778 0.98516 0.95156 1.69889 1.45723 1.36094 1.00997 0.86903 0.79880 0.86131 0.77088 1.19716 1.21285 1.18652 1.48221 1.48459 1.11702 1.22618 1.22275 1.01370 0.83382 1.00393 1.18319 0.79409 0.86684 0.82313 1.90704 1.61629 1.15286 1.75993 1.20128 1.02730 0.94054 0.95500 1.22389 0.96193 0.93756 1.00000 1.21120 0.99989 1.00070 0.93836 1.21101 0.98151 0.93319 0.97570 1.19556 1.01090 0.94097 0.94848 1.21044 0.92903 0.98660 0.90592 1.62021 1.09468 1.51952 1.03173 1.22391 1.00957 0.98078 0.90993 1.22494 0.94240 0.95019 1.01240 1.21099 0.95315 1.00040 0.91476 0.92582 0.93047 0.95397 0.92355 0.92049 0.90768 0.91389 0.82884 0.85604 0.86031 0.89855 0.93738 0.95645 0.91297 0.91359 0.90639 0.91438 0.95442 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.00 37.16 0.33 -2.79 16 2 C 0.22 5.40 2.30 -69.08 -0.16 5.24 16 3 H 0.07 1.76 3.96 -51.93 -0.21 1.56 16 4 C -0.53 -14.44 8.81 -34.44 -0.30 -14.74 16 5 H 0.08 2.26 7.53 -52.49 -0.40 1.86 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 8 Si 0.87 22.28 27.12 -169.99 -4.61 17.67 16 9 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.49 6.64 56.52 0.38 -6.11 16 12 N -0.58 -12.30 2.75 -176.38 -0.49 -12.79 16 13 C 0.07 1.13 7.84 59.85 0.47 1.60 16 14 C 0.54 11.66 7.52 -12.33 -0.09 11.57 16 15 O -0.56 -13.84 15.90 5.31 0.08 -13.76 16 16 C -0.12 -2.06 5.57 -104.97 -0.58 -2.64 16 17 C -0.11 -1.50 7.56 -39.19 -0.30 -1.79 16 18 C -0.13 -1.54 10.03 -39.64 -0.40 -1.94 16 19 C -0.08 -0.94 9.69 -39.49 -0.38 -1.32 16 20 C -0.10 -1.19 4.88 -104.68 -0.51 -1.70 16 21 C 0.10 0.99 5.11 -4.98 -0.03 0.96 16 22 N -0.54 -5.56 5.01 -252.72 -1.27 -6.82 16 23 C 0.02 0.19 9.57 60.06 0.57 0.76 16 24 C 0.02 0.19 9.14 60.07 0.55 0.74 16 25 C -0.06 -0.91 7.50 -39.19 -0.29 -1.20 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.01 6.98 -51.93 -0.36 0.65 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.06 1.00 7.03 -51.93 -0.37 0.64 16 31 H 0.07 1.02 4.94 -51.93 -0.26 0.76 16 32 H 0.07 1.08 6.60 -51.93 -0.34 0.73 16 33 H 0.15 2.09 4.16 -52.49 -0.22 1.87 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 37 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 38 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 40 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.07 0.91 6.16 -51.93 -0.32 0.59 16 42 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.13 1.99 7.78 -52.48 -0.41 1.58 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.83 348.15 -8.15 -40.98 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.67 Total: 0.47 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.22 Total: -5.07 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.98 Total: -45.54 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.61 Total: 17.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.83 -8.15 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.904 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds