Wall clock time and date at job start Tue Mar 31 2020 08:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 C 1.50703 * 109.46889 * 240.00717 * 2 1 3 5 5 H 1.07996 * 119.99853 * 274.67430 * 4 2 1 6 6 C 1.37880 * 120.00052 * 94.39137 * 4 2 1 7 7 N 1.31511 * 119.99983 * 186.79219 * 6 4 2 8 8 Si 1.86795 * 119.99811 * 6.79685 * 6 4 2 9 9 H 1.48504 * 109.47376 * 87.41286 * 8 6 4 10 10 H 1.48508 * 109.46907 * 207.41197 * 8 6 4 11 11 H 1.48497 * 109.47268 * 327.40830 * 8 6 4 12 12 N 1.46503 * 109.47276 * 120.00828 * 2 1 3 13 13 C 1.46499 * 120.00109 * 59.99839 * 12 2 1 14 14 C 1.34772 * 119.99944 * 239.99603 * 12 2 1 15 15 O 1.21562 * 119.99806 * 4.95353 * 14 12 2 16 16 C 1.47847 * 120.00355 * 184.95425 * 14 12 2 17 17 C 1.39594 * 120.13891 * 21.81384 * 16 14 12 18 18 C 1.37936 * 119.85013 * 179.74874 * 17 16 14 19 19 C 1.38384 * 120.14540 * 0.53019 * 18 17 16 20 20 C 1.38338 * 120.29043 * 359.74570 * 19 18 17 21 21 C 1.50696 * 119.92729 * 179.97438 * 20 19 18 22 22 N 1.46901 * 109.47501 * 269.98193 * 21 20 19 23 23 C 1.46896 * 111.00226 * 170.00151 * 22 21 20 24 24 C 1.46905 * 110.99624 * 293.95240 * 22 21 20 25 25 C 1.37976 * 120.14421 * 359.97438 * 20 19 18 26 26 H 1.08997 * 109.47332 * 53.75822 * 1 2 3 27 27 H 1.08993 * 109.47400 * 173.76204 * 1 2 3 28 28 H 1.09002 * 109.46555 * 293.75732 * 1 2 3 29 29 H 0.96997 * 119.99895 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47017 * 84.21897 * 13 12 2 31 31 H 1.08998 * 109.46953 * 204.22328 * 13 12 2 32 32 H 1.09004 * 109.46844 * 324.22458 * 13 12 2 33 33 H 1.08001 * 120.07737 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.92806 * 180.27506 * 18 17 16 35 35 H 1.07999 * 119.85568 * 179.76620 * 19 18 17 36 36 H 1.09002 * 109.47191 * 29.98188 * 21 20 19 37 37 H 1.08996 * 109.47233 * 149.97882 * 21 20 19 38 38 H 1.09001 * 109.47605 * 59.99493 * 23 22 21 39 39 H 1.08998 * 109.47090 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.46739 * 299.99582 * 23 22 21 41 41 H 1.08996 * 109.46835 * 59.99927 * 24 22 21 42 42 H 1.08997 * 109.46884 * 179.97438 * 24 22 21 43 43 H 1.08998 * 109.47204 * 300.00160 * 24 22 21 44 44 H 1.08007 * 120.07209 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1404 -1.7848 -1.2275 6 6 2.3482 0.0112 -2.3623 7 7 2.6579 -0.6154 -3.4763 8 14 2.3366 1.8784 -2.3130 9 1 3.6639 2.3701 -1.8639 10 1 2.0459 2.4076 -3.6699 11 1 1.2906 2.3421 -1.3664 12 7 2.0184 -0.6908 1.1961 13 6 1.6645 -2.0934 1.4278 14 6 2.7933 -0.0359 2.0832 15 8 3.0129 1.1509 1.9386 16 6 3.3762 -0.7610 3.2323 17 6 3.5264 -2.1479 3.1829 18 6 4.0758 -2.8177 4.2563 19 6 4.4675 -2.1191 5.3848 20 6 4.3161 -0.7452 5.4424 21 6 4.7449 0.0073 6.6756 22 7 3.6187 0.0901 7.6152 23 6 4.0578 0.6038 8.9195 24 6 2.5328 0.9120 7.0642 25 6 3.7733 -0.0625 4.3734 26 1 -0.3634 0.6075 -0.8288 27 1 -0.3634 -1.0215 -0.1117 28 1 -0.3632 0.4140 0.9406 29 1 2.8806 -0.1078 -4.2724 30 1 2.3572 -2.7371 0.8858 31 1 1.7239 -2.3117 2.4940 32 1 0.6489 -2.2747 1.0757 33 1 3.2173 -2.6948 2.3043 34 1 4.1967 -3.8902 4.2176 35 1 4.8936 -2.6487 6.2240 36 1 5.5758 -0.5153 7.1496 37 1 5.0599 1.0127 6.3966 38 1 4.4820 1.6000 8.7936 39 1 3.2047 0.6545 9.5959 40 1 4.8129 -0.0625 9.3368 41 1 2.1793 0.4698 6.1328 42 1 1.7118 0.9563 7.7797 43 1 2.9017 1.9193 6.8711 44 1 3.6559 1.0102 4.4195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:30 Heat of formation + Delta-G solvation = -0.945211 kcal Electronic energy + Delta-G solvation = -23441.786471 eV Core-core repulsion = 20166.308185 eV Total energy + Delta-G solvation = -3275.478286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.51074 -39.81933 -37.87060 -37.29799 -34.91344 -33.34886 -32.20253 -31.38826 -28.51442 -28.31448 -27.45583 -27.28666 -25.03945 -23.48168 -22.58522 -21.89234 -20.24730 -19.21085 -17.81802 -17.70828 -17.15121 -16.55344 -16.47821 -16.35454 -15.96778 -15.79767 -15.34253 -15.00172 -14.66523 -14.49510 -14.25923 -14.24528 -13.81951 -13.56937 -13.25052 -13.22394 -13.05886 -13.02712 -12.80623 -12.69683 -12.58151 -12.38882 -12.36538 -12.24221 -11.86010 -11.66358 -11.31040 -10.81498 -10.75042 -9.92091 -9.75494 -9.39335 -9.31447 -8.40661 -6.43755 -0.03408 0.37282 1.23368 1.29877 1.39084 1.89298 2.21119 2.24914 2.75599 3.00459 3.22122 3.60655 3.74918 3.94248 4.09028 4.21247 4.26787 4.33326 4.42337 4.43815 4.49309 4.55669 4.58094 4.63525 4.71011 4.74171 4.74880 4.77161 4.88851 4.92952 4.99832 5.04126 5.06438 5.08625 5.30209 5.42281 5.45917 5.49921 5.57333 5.75838 5.95766 5.97944 6.08557 6.13655 6.60323 6.67023 7.18205 7.29291 8.74612 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.003979 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.508779 B = 7034.773073 C = 7459.358898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.220 3.780 3 H 0.039 0.961 4 C -0.520 4.520 5 H 0.057 0.943 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.921 3.079 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.254 1.254 12 N -0.588 5.588 13 C 0.067 3.933 14 C 0.535 3.465 15 O -0.605 6.605 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.070 4.070 20 C -0.092 4.092 21 C 0.096 3.904 22 N -0.549 5.549 23 C 0.023 3.977 24 C 0.020 3.980 25 C -0.070 4.070 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.269 0.731 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.108 0.892 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.022 0.978 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 -4.300 24.350 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.118 3.882 3 H 0.057 0.943 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.747 3.253 9 H -0.212 1.212 10 H -0.198 1.198 11 H -0.178 1.178 12 N -0.317 5.317 13 C -0.075 4.075 14 C 0.326 3.674 15 O -0.489 6.489 16 C -0.151 4.151 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.088 4.088 20 C -0.093 4.093 21 C -0.031 4.031 22 N -0.273 5.273 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.089 4.089 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.040 0.960 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.601 -4.151 24.130 24.537 hybrid contribution 0.366 2.029 -1.117 2.344 sum 1.967 -2.122 23.013 23.194 Atomic orbital electron populations 1.22071 0.95718 1.02042 0.99950 1.19204 0.92822 0.93514 0.82646 0.94319 1.21323 1.43894 0.94979 0.95623 0.92447 1.25565 0.94147 1.01936 0.95122 1.69974 1.47784 1.37462 1.01695 0.86134 0.79238 0.82212 0.77719 1.21247 1.19779 1.17757 1.48164 1.48453 1.13431 1.21643 1.22527 1.01649 0.80654 1.02631 1.19075 0.78677 0.86416 0.83227 1.90654 1.63334 1.17565 1.77395 1.19862 1.05402 0.95240 0.94598 1.22445 0.96811 0.92404 1.01205 1.21509 0.97994 1.01781 0.92569 1.21550 0.96294 0.92680 0.98316 1.19797 0.99943 0.94974 0.94579 1.21095 0.93623 0.98383 0.90041 1.62046 1.09247 1.52064 1.03907 1.22468 1.01764 0.98427 0.89781 1.22445 0.94993 0.94658 1.00737 1.21041 0.96375 0.99347 0.92186 0.92998 0.91543 0.93617 0.92147 0.91998 0.87576 0.90672 0.82604 0.81946 0.82489 0.87360 0.94537 0.95600 0.90486 0.89795 0.92664 0.90175 0.95952 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 9.00 71.98 0.65 -5.18 16 2 C 0.22 10.85 2.30 44.24 0.10 10.96 16 3 H 0.04 2.13 3.96 -2.39 -0.01 2.12 16 4 C -0.52 -29.15 8.81 25.60 0.23 -28.92 16 5 H 0.06 3.39 7.53 -2.91 -0.02 3.37 16 6 C 0.03 1.89 5.47 84.66 0.46 2.35 16 7 N -0.93 -57.01 13.96 21.45 0.30 -56.71 16 8 Si 0.92 47.05 27.12 68.60 1.86 48.91 16 9 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 10 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.25 -12.46 6.64 99.48 0.66 -11.80 16 12 N -0.59 -25.19 2.75 -830.21 -2.29 -27.47 16 13 C 0.07 2.14 7.84 127.77 1.00 3.14 16 14 C 0.54 23.57 7.52 86.79 0.65 24.22 16 15 O -0.61 -31.65 15.90 -3.91 -0.06 -31.71 16 16 C -0.15 -5.03 5.57 -20.09 -0.11 -5.14 16 17 C -0.11 -2.92 7.56 22.53 0.17 -2.75 16 18 C -0.12 -2.33 10.03 22.23 0.22 -2.11 16 19 C -0.07 -1.29 9.69 22.33 0.22 -1.07 16 20 C -0.09 -2.10 4.88 -19.90 -0.10 -2.20 16 21 C 0.10 1.75 5.11 85.56 0.44 2.19 16 22 N -0.55 -9.91 5.01 -953.48 -4.78 -14.69 16 23 C 0.02 0.30 9.57 127.69 1.22 1.52 16 24 C 0.02 0.40 9.14 127.69 1.17 1.57 16 25 C -0.07 -2.12 7.50 22.52 0.17 -1.95 16 26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 2.54 6.98 -2.39 -0.02 2.52 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.06 1.98 7.03 -2.39 -0.02 1.96 16 31 H 0.11 2.72 4.94 -2.39 -0.01 2.71 16 32 H 0.07 2.28 6.60 -2.38 -0.02 2.26 16 33 H 0.16 3.97 4.16 -2.91 -0.01 3.95 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.11 1.45 8.01 -2.39 -0.02 1.43 16 37 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 38 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 41 H 0.05 1.33 6.16 -2.39 -0.01 1.32 16 42 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 43 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.11 3.59 7.78 -2.91 -0.02 3.57 16 Total: -1.00 -74.09 348.15 2.47 -71.62 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.94 Total: 13.42 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 6.49 Total: -3.38 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -6.76 Total: -98.87 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.86 Total: 48.91 kcal Total: -74.09 2.47 -71.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.679 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds