Wall clock time and date at job start Tue Mar 31 2020 07:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46783 * 2 1 4 4 N 1.46896 * 109.47288 * 240.00315 * 2 1 3 5 5 C 1.46894 * 111.00310 * 84.99508 * 4 2 1 6 6 C 1.52999 * 109.47599 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47565 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00068 * 359.97438 * 9 7 6 11 11 C 1.46505 * 119.99873 * 180.02562 * 9 7 6 12 12 C 1.50694 * 109.47069 * 89.99904 * 11 9 7 13 13 H 1.07994 * 120.00269 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99740 * 180.02562 * 12 11 9 15 15 N 1.31520 * 120.00003 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00070 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46739 * 90.00424 * 16 14 12 18 18 H 1.48497 * 109.47444 * 210.00151 * 16 14 12 19 19 H 1.48493 * 109.47038 * 330.00553 * 16 14 12 20 20 C 1.50696 * 109.47292 * 119.99742 * 2 1 3 21 21 C 1.38230 * 120.00346 * 259.99950 * 20 2 1 22 22 C 1.38235 * 120.00326 * 180.02562 * 21 20 2 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38239 * 120.00062 * 0.02871 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 23 22 26 26 H 1.08992 * 109.47282 * 60.00109 * 1 2 3 27 27 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46823 * 299.99696 * 1 2 3 29 29 H 1.00902 * 111.00176 * 321.04281 * 4 2 1 30 30 H 1.09000 * 109.47818 * 300.00371 * 5 4 2 31 31 H 1.09008 * 109.47124 * 60.00389 * 5 4 2 32 32 H 1.09001 * 109.47181 * 300.00290 * 6 5 4 33 33 H 1.09003 * 109.47137 * 59.99815 * 6 5 4 34 34 H 1.09000 * 109.47201 * 89.99793 * 10 9 7 35 35 H 1.08994 * 109.47300 * 209.99972 * 10 9 7 36 36 H 1.09003 * 109.47211 * 329.99930 * 10 9 7 37 37 H 1.09003 * 109.46533 * 210.00108 * 11 9 7 38 38 H 1.09002 * 109.46616 * 329.99603 * 11 9 7 39 39 H 0.96998 * 119.99659 * 179.97438 * 15 14 12 40 40 H 1.08000 * 120.00356 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 42 42 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.00087 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00181 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5950 -0.5330 -3.5745 7 6 2.6600 0.4058 -4.7515 8 8 2.3293 1.5654 -4.6212 9 7 3.0855 -0.0431 -5.9489 10 6 3.4855 -1.4436 -6.1062 11 6 3.1492 0.8699 -7.0930 12 6 4.5059 1.5241 -7.1387 13 1 5.2469 1.2836 -6.3907 14 6 4.8013 2.4297 -8.1356 15 7 5.9856 3.0003 -8.1758 16 14 3.5199 2.8451 -9.4298 17 1 2.7047 3.9970 -8.9673 18 1 4.1983 3.1982 -10.7027 19 1 2.6381 1.6705 -9.6481 20 6 2.0324 -0.7103 1.2304 21 6 2.4588 0.0195 2.3242 22 6 2.9201 -0.6321 3.4527 23 6 2.9545 -2.0136 3.4876 24 6 2.5281 -2.7435 2.3938 25 6 2.0668 -2.0919 1.2653 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.4496 -1.4979 -1.4101 30 1 1.0871 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5904 -0.9271 -3.3692 33 1 1.9183 -1.3565 -3.8030 34 1 2.6192 -2.0385 -6.3955 35 1 4.2516 -1.5182 -6.8779 36 1 3.8833 -1.8161 -5.1622 37 1 2.9843 0.3103 -8.0138 38 1 2.3799 1.6353 -6.9902 39 1 6.1935 3.6371 -8.8773 40 1 2.4323 1.0988 2.2969 41 1 3.2577 -0.0619 4.3055 42 1 3.3153 -2.5227 4.3691 43 1 2.5546 -3.8228 2.4212 44 1 1.7333 -2.6621 0.4109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181375369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:21 Heat of formation + Delta-G solvation = -12.308916 kcal Electronic energy + Delta-G solvation = -22292.346796 eV Core-core repulsion = 19016.375742 eV Total energy + Delta-G solvation = -3275.971053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.70669 -39.09043 -36.87939 -34.92047 -32.99862 -32.43572 -31.05143 -30.05694 -28.86247 -27.78436 -25.86421 -24.07672 -23.29532 -22.50410 -21.43040 -20.65730 -18.38737 -17.13150 -16.95646 -16.52249 -15.78944 -15.53160 -15.43416 -15.11403 -14.74313 -14.16095 -14.12818 -13.83245 -13.49846 -13.39002 -13.09886 -12.88433 -12.45103 -12.36598 -12.23371 -12.12829 -11.96928 -11.81273 -11.65393 -11.38720 -11.09436 -11.04371 -10.92388 -10.84427 -10.50664 -10.14026 -9.53602 -9.05171 -9.01322 -8.86828 -8.58263 -8.50248 -7.69294 -6.07895 -4.06607 1.22116 1.27762 3.29347 3.35214 3.36407 3.36956 3.58210 3.76555 4.22594 4.40115 4.58509 4.71281 4.83463 4.94727 4.98431 5.06288 5.11896 5.18431 5.25285 5.31505 5.35040 5.39098 5.55701 5.58258 5.60287 5.75858 5.81166 5.85809 5.86145 5.93873 6.08360 6.12801 6.20118 6.32519 6.37029 6.47014 6.70450 6.84986 6.94338 6.94630 7.25681 7.34576 7.61919 8.25941 8.48076 8.93847 8.99953 9.52338 11.05586 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.002631 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.361464 B =10638.173733 C =10672.308308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 H 0.089 0.911 4 N -0.682 5.682 5 C 0.075 3.925 6 C -0.136 4.136 7 C 0.507 3.493 8 O -0.544 6.544 9 N -0.599 5.599 10 C 0.083 3.917 11 C 0.215 3.785 12 C -0.528 4.528 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.063 4.063 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.099 4.099 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.338 0.662 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -13.029 19.584 25.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 H 0.107 0.893 4 N -0.313 5.313 5 C -0.054 4.054 6 C -0.176 4.176 7 C 0.294 3.706 8 O -0.422 6.422 9 N -0.331 5.331 10 C -0.061 4.061 11 C 0.094 3.906 12 C -0.567 4.567 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.064 4.064 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.117 4.117 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.596 -12.195 19.660 25.047 hybrid contribution -1.277 0.285 -0.993 1.643 sum -10.873 -11.911 18.667 24.669 Atomic orbital electron populations 1.22478 0.96149 1.02356 1.02655 1.20445 0.92727 0.97665 0.88068 0.89320 1.60572 1.57113 1.09859 1.03722 1.21698 1.00602 0.94854 0.88231 1.21591 1.03840 0.98701 0.93480 1.20312 0.77923 0.88501 0.83883 1.90665 1.49416 1.18472 1.83678 1.47846 1.63703 1.10650 1.10882 1.21666 0.99745 0.82202 1.02456 1.19659 0.98493 0.89280 0.83160 1.21336 0.97789 1.24373 1.13169 0.90771 1.24873 0.95309 0.95321 0.97597 1.69904 1.20818 1.28946 1.33972 0.86835 0.81951 0.79535 0.81264 1.19926 1.21064 1.19100 1.19801 0.98195 0.93865 0.94515 1.21025 0.99380 0.99808 0.93317 1.21090 1.00065 0.94638 0.98117 1.21114 1.00641 0.94247 0.98583 1.21141 0.99491 0.99751 0.93693 1.20904 0.99313 0.93924 0.97578 0.91959 0.92283 0.91850 0.84437 0.94247 0.89937 0.88435 0.89857 0.93743 0.90629 0.91930 0.95289 0.94613 0.92569 0.86218 0.86286 0.86448 0.86319 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.14 37.16 0.34 -1.21 16 2 C 0.12 1.22 2.79 -68.87 -0.19 1.03 16 3 H 0.09 0.97 7.66 -51.92 -0.40 0.57 16 4 N -0.68 -7.40 5.70 -107.95 -0.62 -8.01 16 5 C 0.08 1.02 4.77 -3.83 -0.02 1.00 16 6 C -0.14 -1.91 4.51 -27.88 -0.13 -2.04 16 7 C 0.51 10.23 7.67 -10.99 -0.08 10.14 16 8 O -0.54 -13.32 15.56 5.56 0.09 -13.23 16 9 N -0.60 -12.37 2.86 -182.96 -0.52 -12.90 16 10 C 0.08 1.27 10.24 59.85 0.61 1.88 16 11 C 0.21 5.32 4.23 -5.19 -0.02 5.29 16 12 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 13 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 16 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 17 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 20 C -0.06 -0.64 4.96 -104.62 -0.52 -1.16 16 21 C -0.12 -1.14 9.67 -39.59 -0.38 -1.52 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.10 -0.94 9.32 -39.58 -0.37 -1.31 16 26 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.34 3.08 7.82 -39.29 -0.31 2.77 16 30 H 0.04 0.55 7.39 -51.93 -0.38 0.17 16 31 H 0.08 1.30 8.01 -51.92 -0.42 0.88 16 32 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 33 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 37 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 38 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.12 1.01 8.04 -52.49 -0.42 0.59 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.12 1.00 7.25 -52.49 -0.38 0.62 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -34.53 361.74 -8.99 -43.53 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.11 Total: 1.34 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.39 Total: -6.06 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.36 Total: -48.12 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.53 -8.99 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181375369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.219 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds