Wall clock time and date at job start Tue Mar 31 2020 07:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46783 * 2 1 4 4 N 1.46896 * 109.47288 * 240.00315 * 2 1 3 5 5 C 1.46894 * 111.00310 * 84.99508 * 4 2 1 6 6 C 1.52999 * 109.47599 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47565 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00068 * 359.97438 * 9 7 6 11 11 C 1.46505 * 119.99873 * 180.02562 * 9 7 6 12 12 C 1.50694 * 109.47069 * 89.99904 * 11 9 7 13 13 H 1.07994 * 120.00269 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99740 * 180.02562 * 12 11 9 15 15 N 1.31520 * 120.00003 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00070 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46739 * 90.00424 * 16 14 12 18 18 H 1.48497 * 109.47444 * 210.00151 * 16 14 12 19 19 H 1.48493 * 109.47038 * 330.00553 * 16 14 12 20 20 C 1.50696 * 109.47292 * 119.99742 * 2 1 3 21 21 C 1.38230 * 120.00346 * 259.99950 * 20 2 1 22 22 C 1.38235 * 120.00326 * 180.02562 * 21 20 2 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38239 * 120.00062 * 0.02871 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 23 22 26 26 H 1.08992 * 109.47282 * 60.00109 * 1 2 3 27 27 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46823 * 299.99696 * 1 2 3 29 29 H 1.00902 * 111.00176 * 321.04281 * 4 2 1 30 30 H 1.09000 * 109.47818 * 300.00371 * 5 4 2 31 31 H 1.09008 * 109.47124 * 60.00389 * 5 4 2 32 32 H 1.09001 * 109.47181 * 300.00290 * 6 5 4 33 33 H 1.09003 * 109.47137 * 59.99815 * 6 5 4 34 34 H 1.09000 * 109.47201 * 89.99793 * 10 9 7 35 35 H 1.08994 * 109.47300 * 209.99972 * 10 9 7 36 36 H 1.09003 * 109.47211 * 329.99930 * 10 9 7 37 37 H 1.09003 * 109.46533 * 210.00108 * 11 9 7 38 38 H 1.09002 * 109.46616 * 329.99603 * 11 9 7 39 39 H 0.96998 * 119.99659 * 179.97438 * 15 14 12 40 40 H 1.08000 * 120.00356 * 359.97438 * 21 20 2 41 41 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 42 42 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.00087 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00181 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5950 -0.5330 -3.5745 7 6 2.6600 0.4058 -4.7515 8 8 2.3293 1.5654 -4.6212 9 7 3.0855 -0.0431 -5.9489 10 6 3.4855 -1.4436 -6.1062 11 6 3.1492 0.8699 -7.0930 12 6 4.5059 1.5241 -7.1387 13 1 5.2469 1.2836 -6.3907 14 6 4.8013 2.4297 -8.1356 15 7 5.9856 3.0003 -8.1758 16 14 3.5199 2.8451 -9.4298 17 1 2.7047 3.9970 -8.9673 18 1 4.1983 3.1982 -10.7027 19 1 2.6381 1.6705 -9.6481 20 6 2.0324 -0.7103 1.2304 21 6 2.4588 0.0195 2.3242 22 6 2.9201 -0.6321 3.4527 23 6 2.9545 -2.0136 3.4876 24 6 2.5281 -2.7435 2.3938 25 6 2.0668 -2.0919 1.2653 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.4496 -1.4979 -1.4101 30 1 1.0871 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5904 -0.9271 -3.3692 33 1 1.9183 -1.3565 -3.8030 34 1 2.6192 -2.0385 -6.3955 35 1 4.2516 -1.5182 -6.8779 36 1 3.8833 -1.8161 -5.1622 37 1 2.9843 0.3103 -8.0138 38 1 2.3799 1.6353 -6.9902 39 1 6.1935 3.6371 -8.8773 40 1 2.4323 1.0988 2.2969 41 1 3.2577 -0.0619 4.3055 42 1 3.3153 -2.5227 4.3691 43 1 2.5546 -3.8228 2.4212 44 1 1.7333 -2.6621 0.4109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181375369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:20 Heat of formation + Delta-G solvation = -35.234406 kcal Electronic energy + Delta-G solvation = -22293.340919 eV Core-core repulsion = 19016.375742 eV Total energy + Delta-G solvation = -3276.965177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78558 -40.29318 -37.78500 -36.61500 -34.74548 -33.86677 -31.73128 -31.22689 -30.16709 -28.99381 -27.30569 -25.28238 -24.34810 -23.54603 -22.72558 -21.42979 -19.90687 -19.15931 -17.96861 -17.82884 -17.08347 -16.91832 -16.39712 -16.25107 -15.94957 -15.59896 -15.11576 -14.88559 -14.63729 -14.26829 -14.12848 -14.11788 -14.05710 -13.64212 -13.55409 -13.27745 -13.14371 -12.98255 -12.88838 -12.66361 -12.43737 -12.35935 -12.14222 -12.00089 -11.75621 -11.74004 -11.65280 -10.84438 -10.66534 -9.73409 -9.60123 -9.39681 -9.36192 -8.35163 -6.40507 0.53026 0.59923 1.31770 1.36061 1.44705 1.80897 2.29714 2.30987 2.92456 2.99166 3.21178 3.79818 3.86244 3.99655 4.09073 4.15406 4.23041 4.32021 4.33731 4.37058 4.41772 4.61905 4.65292 4.68209 4.71675 4.79681 4.84624 4.85281 4.95799 4.98074 5.01812 5.05810 5.15047 5.21440 5.26683 5.45217 5.62312 5.63350 5.70736 5.73220 6.01637 6.21148 6.22939 6.47322 6.61043 6.71235 7.20398 7.42833 8.82042 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.002631 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.361464 B =10638.173733 C =10672.308308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 H 0.072 0.928 4 N -0.676 5.676 5 C 0.085 3.915 6 C -0.118 4.118 7 C 0.495 3.505 8 O -0.599 6.599 9 N -0.609 5.609 10 C 0.076 3.924 11 C 0.222 3.778 12 C -0.537 4.537 13 H 0.026 0.974 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.951 3.049 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.236 1.236 20 C -0.077 4.077 21 C -0.135 4.135 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.352 0.648 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.018 0.982 39 H 0.269 0.731 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 -15.680 19.811 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.090 0.910 4 N -0.308 5.308 5 C -0.044 4.044 6 C -0.158 4.158 7 C 0.284 3.716 8 O -0.481 6.481 9 N -0.340 5.340 10 C -0.065 4.065 11 C 0.099 3.901 12 C -0.576 4.576 13 H 0.045 0.955 14 C -0.190 4.190 15 N -0.587 5.587 16 Si 0.773 3.227 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.160 1.160 20 C -0.077 4.077 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.127 4.127 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.143 0.857 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.307 -14.920 19.905 27.325 hybrid contribution -0.653 1.084 -0.938 1.575 sum -11.960 -13.837 18.966 26.348 Atomic orbital electron populations 1.22403 0.94969 1.03096 1.02465 1.20402 0.93642 0.96821 0.87905 0.91004 1.60491 1.57837 1.09695 1.02781 1.21449 0.99342 0.94538 0.89094 1.21527 1.05564 0.98102 0.90584 1.21399 0.76488 0.88715 0.84959 1.90633 1.51740 1.21160 1.84575 1.47994 1.63659 1.12268 1.10071 1.21988 1.01176 0.79489 1.03882 1.19335 0.94995 0.89917 0.85824 1.21579 0.98957 1.25049 1.11975 0.95535 1.25906 0.97705 0.94997 1.00351 1.70060 1.23307 1.29975 1.35350 0.85674 0.79055 0.80022 0.77940 1.20240 1.19930 1.15950 1.19845 0.99043 0.94413 0.94448 1.21219 0.99974 1.00245 0.93864 1.21362 0.99801 0.95239 0.98361 1.21446 1.00131 0.94241 0.99370 1.21453 0.98899 1.00941 0.93417 1.21101 0.99501 0.93676 0.98395 0.92709 0.91011 0.91463 0.82820 0.95004 0.93093 0.87250 0.85691 0.89959 0.91838 0.89073 0.93101 0.96402 0.92249 0.85970 0.84696 0.84393 0.84306 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 71.98 0.66 -2.15 16 2 C 0.12 2.41 2.79 44.17 0.12 2.54 16 3 H 0.07 1.64 7.66 -2.38 -0.02 1.62 16 4 N -0.68 -13.70 5.70 -495.46 -2.83 -16.52 16 5 C 0.09 2.28 4.77 86.30 0.41 2.69 16 6 C -0.12 -3.08 4.51 29.85 0.13 -2.95 16 7 C 0.50 19.81 7.67 87.66 0.67 20.48 16 8 O -0.60 -30.21 15.56 -3.03 -0.05 -30.26 16 9 N -0.61 -24.57 2.86 -851.13 -2.43 -27.00 16 10 C 0.08 2.12 10.24 127.77 1.31 3.42 16 11 C 0.22 10.92 4.23 85.63 0.36 11.28 16 12 C -0.54 -32.17 9.94 25.60 0.25 -31.92 16 13 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 14 C 0.01 0.49 5.47 84.65 0.46 0.95 16 15 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 16 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 20 C -0.08 -1.49 4.96 -19.87 -0.10 -1.59 16 21 C -0.13 -2.57 9.67 22.27 0.22 -2.35 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 23 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 24 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.11 -1.87 9.32 22.27 0.21 -1.66 16 26 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 27 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.35 5.43 7.82 -89.69 -0.70 4.73 16 30 H 0.03 0.89 7.39 -2.39 -0.02 0.87 16 31 H 0.05 1.67 8.01 -2.38 -0.02 1.66 16 32 H 0.11 2.68 7.40 -2.39 -0.02 2.66 16 33 H 0.13 2.28 8.11 -2.39 -0.02 2.26 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 36 H 0.09 1.99 6.44 -2.39 -0.02 1.97 16 37 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 38 H 0.02 0.94 6.85 -2.39 -0.02 0.93 16 39 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 40 H 0.12 2.12 8.04 -2.91 -0.02 2.10 16 41 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.13 1.85 7.25 -2.91 -0.02 1.83 16 Total: -1.00 -79.19 361.74 2.48 -76.71 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.22 Total: 17.54 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.38 Total: -6.77 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -4.96 Total: -104.02 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -79.19 2.48 -76.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181375369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.472 kcal (2) G-P(sol) polarization free energy of solvation -79.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds