Wall clock time and date at job start Tue Mar 31 2020 07:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.46748 * 120.00184 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99491 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99801 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 12 12 C 1.50697 * 109.47527 * 89.99956 * 11 9 7 13 13 H 1.08009 * 119.99486 * 359.97438 * 12 11 9 14 14 C 1.37868 * 120.00223 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00106 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00029 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47261 * 119.99939 * 16 14 12 19 19 H 1.48506 * 109.47056 * 239.99773 * 16 14 12 20 20 C 1.50697 * 109.46664 * 239.99625 * 2 1 3 21 21 C 1.38234 * 120.00117 * 279.72684 * 20 2 1 22 22 C 1.38244 * 119.99568 * 179.81545 * 21 20 2 23 23 C 1.38234 * 120.00170 * 0.39657 * 22 21 20 24 24 C 1.38231 * 119.99788 * 359.85631 * 23 22 21 25 25 C 1.38233 * 120.00438 * 359.95860 * 24 23 22 26 26 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46884 * 300.00295 * 1 2 3 28 28 H 1.09004 * 109.47165 * 60.00032 * 1 2 3 29 29 H 1.00897 * 110.99542 * 151.04632 * 4 2 1 30 30 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 31 31 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 34 34 H 1.08999 * 109.46908 * 90.00559 * 10 9 7 35 35 H 1.09000 * 109.47065 * 210.00008 * 10 9 7 36 36 H 1.08990 * 109.47304 * 330.00300 * 10 9 7 37 37 H 1.09004 * 109.46561 * 209.99850 * 11 9 7 38 38 H 1.08998 * 109.47073 * 329.99510 * 11 9 7 39 39 H 0.97000 * 119.99819 * 180.02562 * 15 14 12 40 40 H 1.07995 * 120.00204 * 0.02562 * 21 20 2 41 41 H 1.08001 * 119.99285 * 180.23382 * 22 21 20 42 42 H 1.07995 * 119.99900 * 179.83990 * 23 22 21 43 43 H 1.08007 * 119.99744 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00449 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5329 3.5742 7 6 2.6600 0.4057 4.7515 8 8 2.3279 1.5649 4.6215 9 7 3.0872 -0.0428 5.9485 10 6 3.4890 -1.4429 6.1052 11 6 3.1499 0.8699 7.0928 12 6 1.8373 0.8390 7.8325 13 1 1.0363 0.2034 7.4847 14 6 1.6589 1.6221 8.9531 15 7 2.6344 2.3957 9.3768 16 14 0.0315 1.5843 9.8695 17 1 -0.8949 0.6401 9.1945 18 1 0.2609 1.1391 11.2675 19 1 -0.5653 2.9441 9.8748 20 6 2.0322 -0.7105 -1.2304 21 6 2.0719 -2.0919 -1.2631 22 6 2.5290 -2.7436 -2.3933 23 6 2.9542 -2.0138 -3.4877 24 6 2.9194 -0.6324 -3.4529 25 6 2.4587 0.0193 -2.3243 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9172 -1.1205 1.0287 30 1 1.0871 0.6163 2.5526 31 1 2.7588 1.0462 2.1182 32 1 1.9200 -1.3567 3.8031 33 1 3.5915 -0.9263 3.3683 34 1 4.5535 -1.5413 5.8930 35 1 3.2910 -1.7654 7.1274 36 1 2.9214 -2.0635 5.4120 37 1 3.9517 0.5585 7.7623 38 1 3.3442 1.8826 6.7396 39 1 2.5090 2.9463 10.1655 40 1 1.7426 -2.6620 -0.4071 41 1 2.5564 -3.8229 -2.4202 42 1 3.3137 -2.5230 -4.3696 43 1 3.2520 -0.0622 -4.3078 44 1 2.4319 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181375388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:24 Heat of formation + Delta-G solvation = -17.139116 kcal Electronic energy + Delta-G solvation = -22260.520169 eV Core-core repulsion = 18984.339662 eV Total energy + Delta-G solvation = -3276.180506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.78072 -38.98045 -36.73532 -34.78881 -32.99008 -32.47961 -31.12987 -29.89861 -28.76559 -27.48040 -25.72865 -24.13157 -23.20827 -22.65977 -21.52346 -20.50165 -18.34424 -17.20054 -16.55278 -16.35630 -16.05132 -15.59349 -15.32912 -15.04446 -14.56273 -14.27734 -14.06871 -13.92696 -13.55305 -13.44227 -12.87737 -12.57529 -12.37848 -12.29070 -12.15925 -12.03480 -11.82972 -11.70910 -11.42262 -11.26593 -11.15042 -11.00300 -10.82763 -10.74382 -10.55437 -10.14571 -9.59254 -9.14380 -8.98066 -8.86276 -8.52886 -8.42799 -7.61744 -6.03233 -4.07834 1.10239 1.17983 3.30551 3.37673 3.41173 3.48503 3.53965 3.79985 4.27263 4.45625 4.47234 4.69848 4.77413 4.91948 5.11782 5.14462 5.22939 5.25692 5.30343 5.31692 5.38176 5.47562 5.63518 5.65028 5.71920 5.80230 5.83456 5.86432 5.94797 6.09400 6.12863 6.20416 6.22929 6.25709 6.29111 6.38617 6.77013 6.96858 7.07358 7.30092 7.45944 7.56515 7.93504 8.25029 8.44666 8.92078 9.12328 9.57368 11.04899 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031380 B = 0.002590 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.068821 B =10806.189698 C =11072.637381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.123 3.877 3 H 0.053 0.947 4 N -0.685 5.685 5 C 0.075 3.925 6 C -0.136 4.136 7 C 0.504 3.496 8 O -0.546 6.546 9 N -0.604 5.604 10 C 0.084 3.916 11 C 0.244 3.756 12 C -0.524 4.524 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.087 4.087 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.115 4.115 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.340 0.660 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -10.780 -23.221 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 H 0.071 0.929 4 N -0.316 5.316 5 C -0.054 4.054 6 C -0.177 4.177 7 C 0.291 3.709 8 O -0.424 6.424 9 N -0.336 5.336 10 C -0.060 4.060 11 C 0.125 3.875 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.535 5.535 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.158 0.842 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.638 -10.273 -22.935 25.139 hybrid contribution -0.014 0.443 0.413 0.606 sum 0.624 -9.830 -22.522 24.582 Atomic orbital electron populations 1.21782 0.93414 1.02572 1.01563 1.20430 0.96252 0.95345 0.86582 0.92873 1.60626 1.33224 1.33671 1.04091 1.21718 1.02130 0.93006 0.88577 1.21602 1.02728 0.99461 0.93879 1.20284 0.78101 0.88565 0.83987 1.90664 1.48661 1.18818 1.84235 1.48163 1.63594 1.10857 1.10962 1.21634 0.98510 0.83024 1.02881 1.19289 0.97117 0.89431 0.81704 1.21474 0.99353 1.25090 1.10364 0.92422 1.24950 0.96964 0.95090 0.97236 1.69948 1.31949 1.26815 1.24765 0.86438 0.83667 0.77973 0.79317 1.19783 1.20969 1.20879 1.20015 0.99038 0.94153 0.95536 1.21119 0.98592 0.93903 0.98293 1.21201 0.99341 0.99917 0.93622 1.21160 1.00266 0.94233 0.98579 1.21109 1.00180 0.94671 0.98070 1.21078 0.99071 0.99855 0.93331 0.91866 0.91970 0.92662 0.84232 0.89957 0.94339 0.88658 0.89955 0.93856 0.90853 0.92274 0.95056 0.93894 0.92796 0.85015 0.86108 0.86330 0.86209 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.39 37.16 0.35 -1.05 16 2 C 0.12 1.30 2.82 -68.86 -0.19 1.10 16 3 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 4 N -0.68 -7.64 5.69 -107.95 -0.61 -8.26 16 5 C 0.07 1.05 4.77 -3.82 -0.02 1.03 16 6 C -0.14 -1.98 4.51 -27.88 -0.13 -2.11 16 7 C 0.50 10.50 7.67 -10.99 -0.08 10.42 16 8 O -0.55 -13.79 15.56 5.56 0.09 -13.70 16 9 N -0.60 -12.95 2.86 -182.96 -0.52 -13.48 16 10 C 0.08 1.33 10.24 59.85 0.61 1.94 16 11 C 0.24 6.49 5.16 -5.19 -0.03 6.46 16 12 C -0.52 -15.07 9.38 -34.44 -0.32 -15.39 16 13 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.09 -0.85 4.72 -104.62 -0.49 -1.34 16 21 C -0.10 -0.92 9.00 -39.58 -0.36 -1.28 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 24 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 25 C -0.11 -1.05 9.67 -39.58 -0.38 -1.43 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.34 3.45 7.98 -39.29 -0.31 3.14 16 30 H 0.08 1.30 7.39 -51.93 -0.38 0.92 16 31 H 0.04 0.58 8.01 -51.93 -0.42 0.16 16 32 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 33 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 37 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 1.17 7.71 -52.49 -0.40 0.76 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 44 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -33.27 365.68 -9.33 -42.60 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.17 Total: 0.65 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.33 Total: -4.22 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.40 Total: -47.91 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.27 -9.33 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181375388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.460 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds