Wall clock time and date at job start Tue Mar 31 2020 07:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.46748 * 120.00184 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99491 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99801 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 12 12 C 1.50697 * 109.47527 * 89.99956 * 11 9 7 13 13 H 1.08009 * 119.99486 * 359.97438 * 12 11 9 14 14 C 1.37868 * 120.00223 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00106 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00029 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46995 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47261 * 119.99939 * 16 14 12 19 19 H 1.48506 * 109.47056 * 239.99773 * 16 14 12 20 20 C 1.50697 * 109.46664 * 239.99625 * 2 1 3 21 21 C 1.38234 * 120.00117 * 279.72684 * 20 2 1 22 22 C 1.38244 * 119.99568 * 179.81545 * 21 20 2 23 23 C 1.38234 * 120.00170 * 0.39657 * 22 21 20 24 24 C 1.38231 * 119.99788 * 359.85631 * 23 22 21 25 25 C 1.38233 * 120.00438 * 359.95860 * 24 23 22 26 26 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46884 * 300.00295 * 1 2 3 28 28 H 1.09004 * 109.47165 * 60.00032 * 1 2 3 29 29 H 1.00897 * 110.99542 * 151.04632 * 4 2 1 30 30 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 31 31 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 32 32 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 33 33 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 34 34 H 1.08999 * 109.46908 * 90.00559 * 10 9 7 35 35 H 1.09000 * 109.47065 * 210.00008 * 10 9 7 36 36 H 1.08990 * 109.47304 * 330.00300 * 10 9 7 37 37 H 1.09004 * 109.46561 * 209.99850 * 11 9 7 38 38 H 1.08998 * 109.47073 * 329.99510 * 11 9 7 39 39 H 0.97000 * 119.99819 * 180.02562 * 15 14 12 40 40 H 1.07995 * 120.00204 * 0.02562 * 21 20 2 41 41 H 1.08001 * 119.99285 * 180.23382 * 22 21 20 42 42 H 1.07995 * 119.99900 * 179.83990 * 23 22 21 43 43 H 1.08007 * 119.99744 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00449 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5329 3.5742 7 6 2.6600 0.4057 4.7515 8 8 2.3279 1.5649 4.6215 9 7 3.0872 -0.0428 5.9485 10 6 3.4890 -1.4429 6.1052 11 6 3.1499 0.8699 7.0928 12 6 1.8373 0.8390 7.8325 13 1 1.0363 0.2034 7.4847 14 6 1.6589 1.6221 8.9531 15 7 2.6344 2.3957 9.3768 16 14 0.0315 1.5843 9.8695 17 1 -0.8949 0.6401 9.1945 18 1 0.2609 1.1391 11.2675 19 1 -0.5653 2.9441 9.8748 20 6 2.0322 -0.7105 -1.2304 21 6 2.0719 -2.0919 -1.2631 22 6 2.5290 -2.7436 -2.3933 23 6 2.9542 -2.0138 -3.4877 24 6 2.9194 -0.6324 -3.4529 25 6 2.4587 0.0193 -2.3243 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9172 -1.1205 1.0287 30 1 1.0871 0.6163 2.5526 31 1 2.7588 1.0462 2.1182 32 1 1.9200 -1.3567 3.8031 33 1 3.5915 -0.9263 3.3683 34 1 4.5535 -1.5413 5.8930 35 1 3.2910 -1.7654 7.1274 36 1 2.9214 -2.0635 5.4120 37 1 3.9517 0.5585 7.7623 38 1 3.3442 1.8826 6.7396 39 1 2.5090 2.9463 10.1655 40 1 1.7426 -2.6620 -0.4071 41 1 2.5564 -3.8229 -2.4202 42 1 3.3137 -2.5230 -4.3696 43 1 3.2520 -0.0622 -4.3078 44 1 2.4319 1.0986 -2.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181375388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:23 Heat of formation + Delta-G solvation = -38.054697 kcal Electronic energy + Delta-G solvation = -22261.427136 eV Core-core repulsion = 18984.339662 eV Total energy + Delta-G solvation = -3277.087474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75438 -40.34003 -37.67415 -36.56888 -34.77467 -33.85298 -31.75938 -30.96285 -29.93137 -29.05951 -27.26977 -25.55301 -24.30591 -23.61001 -22.71332 -21.29578 -19.91508 -18.71242 -17.95368 -17.83715 -17.09761 -17.04143 -16.46446 -16.31230 -15.94551 -15.60155 -15.00601 -14.92107 -14.65651 -14.22529 -14.16332 -14.02250 -13.66544 -13.56764 -13.43112 -13.29817 -13.11100 -12.94370 -12.77215 -12.66275 -12.62297 -12.30443 -12.21708 -12.09913 -11.82171 -11.67963 -11.57258 -10.66118 -10.60745 -9.77365 -9.62514 -9.50050 -9.40991 -8.23539 -6.38534 0.45522 0.55009 1.35535 1.38029 1.50074 1.85055 2.29662 2.42916 2.90713 3.05684 3.16309 3.69472 3.85559 4.02974 4.07491 4.17013 4.22080 4.34612 4.36031 4.43555 4.49757 4.64408 4.67899 4.73161 4.73559 4.79564 4.90328 4.94544 4.97425 5.04144 5.08761 5.14599 5.22235 5.22969 5.32439 5.55886 5.59944 5.65368 5.67937 5.84097 6.00631 6.05306 6.16271 6.43297 6.69186 6.79991 7.27500 7.49089 8.83723 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031380 B = 0.002590 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.068821 B =10806.189698 C =11072.637381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.124 3.876 3 H 0.043 0.957 4 N -0.672 5.672 5 C 0.084 3.916 6 C -0.116 4.116 7 C 0.493 3.507 8 O -0.603 6.603 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.257 3.743 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.267 1.267 18 H -0.268 1.268 19 H -0.282 1.282 20 C -0.098 4.098 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.128 4.128 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.349 0.651 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.023 0.977 38 H -0.004 1.004 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -13.315 -24.580 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.015 3.985 3 H 0.061 0.939 4 N -0.305 5.305 5 C -0.045 4.045 6 C -0.156 4.156 7 C 0.282 3.718 8 O -0.485 6.485 9 N -0.343 5.343 10 C -0.064 4.064 11 C 0.135 3.865 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.191 1.191 18 H -0.193 1.193 19 H -0.208 1.208 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.147 4.147 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.370 -12.867 -24.311 27.509 hybrid contribution 0.133 1.226 0.761 1.449 sum 0.503 -11.641 -23.550 26.275 Atomic orbital electron populations 1.21749 0.93432 1.02541 1.01283 1.20398 0.96246 0.94989 0.86854 0.93876 1.60572 1.33758 1.32608 1.03522 1.21489 1.00354 0.93056 0.89631 1.21519 1.05299 0.98066 0.90741 1.21405 0.76495 0.88787 0.85083 1.90633 1.50958 1.21669 1.85205 1.48212 1.63723 1.12512 1.09865 1.21948 1.00859 0.79995 1.03597 1.18760 0.96155 0.88485 0.83065 1.21728 0.99973 1.25311 1.10926 0.92897 1.25895 1.00816 0.94497 0.98178 1.70063 1.34093 1.27418 1.25363 0.85343 0.78888 0.77978 0.78445 1.19083 1.19283 1.20770 1.19937 1.00120 0.94539 0.95257 1.21200 0.98964 0.93612 0.98917 1.21477 0.98720 1.01045 0.93271 1.21492 0.99535 0.94236 0.99262 1.21386 0.99723 0.95220 0.98271 1.21244 0.99462 1.00282 0.93695 0.91687 0.93456 0.91746 0.83148 0.92268 0.96004 0.86478 0.86416 0.91064 0.91728 0.88497 0.95855 0.98588 0.92392 0.84853 0.84201 0.84146 0.84436 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 71.98 0.68 -2.03 16 2 C 0.12 2.56 2.82 44.17 0.12 2.69 16 3 H 0.04 0.97 7.66 -2.39 -0.02 0.96 16 4 N -0.67 -14.12 5.69 -495.44 -2.82 -16.94 16 5 C 0.08 2.34 4.77 86.31 0.41 2.75 16 6 C -0.12 -3.16 4.51 29.85 0.13 -3.02 16 7 C 0.49 20.64 7.67 87.66 0.67 21.32 16 8 O -0.60 -31.83 15.56 -3.04 -0.05 -31.88 16 9 N -0.61 -26.28 2.86 -851.15 -2.43 -28.71 16 10 C 0.08 2.30 10.24 127.77 1.31 3.60 16 11 C 0.26 14.19 5.16 85.63 0.44 14.63 16 12 C -0.54 -31.79 9.38 25.60 0.24 -31.55 16 13 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 14 C 0.00 0.28 5.46 84.65 0.46 0.75 16 15 N -0.93 -57.10 13.29 21.44 0.28 -56.82 16 16 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 C -0.10 -1.79 4.72 -19.87 -0.09 -1.89 16 21 C -0.11 -1.79 9.00 22.27 0.20 -1.59 16 22 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.13 -2.19 9.67 22.27 0.22 -1.98 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.09 7.45 -2.38 -0.02 1.07 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.35 6.32 7.98 -89.70 -0.72 5.61 16 30 H 0.06 1.92 7.39 -2.39 -0.02 1.90 16 31 H 0.02 0.67 8.01 -2.39 -0.02 0.65 16 32 H 0.12 2.76 7.40 -2.39 -0.02 2.74 16 33 H 0.12 2.43 8.11 -2.39 -0.02 2.41 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 36 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 37 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 38 H 0.00 -0.26 7.42 -2.39 -0.02 -0.27 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.13 2.09 7.71 -2.91 -0.02 2.07 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.12 1.91 8.04 -2.91 -0.02 1.89 16 Total: -1.00 -75.44 365.68 2.74 -72.70 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.26 Total: 14.97 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.47 Total: -0.94 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -4.97 Total: -102.46 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.05 Total: -31.88 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.44 2.74 -72.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181375388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.650 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds