Wall clock time and date at job start Tue Mar 31 2020 08:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47441 * 2 1 4 4 C 1.50699 * 109.46904 * 119.99879 * 2 1 3 5 5 H 1.08004 * 119.99767 * 120.00117 * 4 2 1 6 6 C 1.37871 * 120.00115 * 299.99675 * 4 2 1 7 7 N 1.31517 * 119.99948 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00158 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47130 * 89.99850 * 8 6 4 10 10 H 1.48499 * 109.47069 * 210.00466 * 8 6 4 11 11 H 1.48503 * 109.46826 * 329.99694 * 8 6 4 12 12 N 1.46501 * 109.47038 * 239.99912 * 2 1 3 13 13 C 1.46506 * 120.00000 * 300.00006 * 12 2 1 14 14 C 1.34772 * 120.00221 * 120.00235 * 12 2 1 15 15 O 1.21700 * 119.99878 * 354.63156 * 14 12 2 16 16 C 1.46674 * 120.00202 * 174.90287 * 14 12 2 17 17 C 1.37879 * 126.23258 * 352.63008 * 16 14 12 18 18 C 1.39839 * 107.08283 * 179.97438 * 17 16 14 19 19 C 1.35451 * 107.86492 * 359.97438 * 18 17 16 20 20 N 1.35529 * 108.87525 * 359.73584 * 19 18 17 21 21 C 1.46503 * 125.67944 * 180.26681 * 20 19 18 22 22 C 1.54266 * 110.03413 * 52.18602 * 21 20 19 23 23 C 1.54889 * 104.19514 * 217.10621 * 22 21 20 24 24 C 1.54890 * 102.74837 * 37.94116 * 23 22 21 25 25 C 1.53867 * 110.02863 * 295.01668 * 21 20 19 26 26 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47048 * 300.00178 * 1 2 3 28 28 H 1.09006 * 109.46792 * 60.00326 * 1 2 3 29 29 H 0.97001 * 119.99842 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47019 * 265.46961 * 13 12 2 31 31 H 1.09000 * 109.46834 * 25.46442 * 13 12 2 32 32 H 1.08996 * 109.46828 * 145.46448 * 13 12 2 33 33 H 1.07999 * 126.45556 * 359.97438 * 17 16 14 34 34 H 1.08002 * 126.06513 * 179.97438 * 18 17 16 35 35 H 1.08007 * 125.55974 * 180.02562 * 19 18 17 36 36 H 1.09005 * 110.01446 * 173.62676 * 21 20 19 37 37 H 1.09003 * 110.48182 * 335.78464 * 22 21 20 38 38 H 1.08998 * 110.48289 * 98.42670 * 22 21 20 39 39 H 1.09002 * 110.75184 * 279.62815 * 23 22 21 40 40 H 1.09002 * 110.91457 * 156.32889 * 23 22 21 41 41 H 1.08997 * 110.48553 * 203.37905 * 24 23 22 42 42 H 1.09006 * 110.59942 * 80.79314 * 24 23 22 43 43 H 1.09005 * 110.03304 * 238.56871 * 25 21 20 44 44 H 1.08996 * 110.03922 * 359.95467 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0070 1.1540 -1.9427 16 6 3.3739 -0.7556 -3.2217 17 6 3.3319 -2.1177 -3.4318 18 6 4.0049 -2.3692 -4.6316 19 6 4.4362 -1.1828 -5.1227 20 7 4.0539 -0.1938 -4.2785 21 6 4.3233 1.2350 -4.4585 22 6 3.8639 1.6869 -5.8601 23 6 4.9349 2.7170 -6.2971 24 6 6.2454 2.1022 -5.7459 25 6 5.8375 1.4989 -4.3859 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7088 1.1614 3.4843 30 1 2.4556 -2.7362 -1.0424 31 1 0.7293 -2.3213 -0.9164 32 1 1.5448 -2.2658 -2.4976 33 1 2.8668 -2.8518 -2.7907 34 1 4.1542 -3.3375 -5.0859 35 1 4.9899 -1.0467 -6.0399 36 1 3.8065 1.8116 -3.6914 37 1 3.8458 0.8407 -6.5469 38 1 2.8820 2.1570 -5.8064 39 1 4.7436 3.6893 -5.8431 40 1 4.9743 2.8004 -7.3832 41 1 7.0014 2.8753 -5.6089 42 1 6.6141 1.3234 -6.4135 43 1 6.0555 2.2044 -3.5840 44 1 6.3718 0.5643 -4.2159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181539559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:36 Heat of formation + Delta-G solvation = 24.133032 kcal Electronic energy + Delta-G solvation = -23956.784996 eV Core-core repulsion = 20682.394185 eV Total energy + Delta-G solvation = -3274.390812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33482 -38.59980 -37.63348 -35.37802 -33.04071 -31.65190 -30.09955 -28.91863 -28.10193 -27.31798 -26.23489 -25.19863 -22.62720 -21.33887 -20.91387 -20.39777 -19.49820 -18.27167 -16.91024 -16.33170 -15.88271 -15.55677 -15.11495 -14.77397 -14.59097 -14.16004 -13.82946 -13.68994 -13.45222 -13.04644 -12.64513 -12.34608 -12.31120 -12.24736 -11.79341 -11.55406 -11.44487 -11.32550 -11.30169 -11.05115 -10.88928 -10.86660 -10.77458 -10.66476 -10.45818 -10.21493 -10.13057 -9.17789 -8.97648 -8.44744 -8.41512 -7.92980 -7.53761 -6.06221 -4.14127 1.93956 2.97416 3.03791 3.28577 3.34957 3.37465 4.00089 4.05652 4.36990 4.41702 4.44995 4.74992 5.06957 5.21394 5.23491 5.27439 5.29466 5.31441 5.37582 5.44006 5.62236 5.66405 5.69311 5.76718 5.83168 5.86562 6.02401 6.10836 6.12596 6.16360 6.32974 6.36080 6.46638 6.78981 6.84230 7.03829 7.09864 7.33196 7.46369 7.50360 7.58689 7.72964 8.03348 8.19886 8.53402 8.83970 9.05439 9.52430 10.99064 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.004265 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.526169 B = 6564.081293 C = 6984.492007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.575 5.575 13 C 0.070 3.930 14 C 0.573 3.427 15 O -0.565 6.565 16 C -0.031 4.031 17 C -0.170 4.170 18 C -0.213 4.213 19 C 0.001 3.999 20 N -0.401 5.401 21 C 0.111 3.889 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.031 0.969 27 H 0.094 0.906 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 -2.348 -17.201 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.304 5.304 13 C -0.074 4.074 14 C 0.361 3.639 15 O -0.447 6.447 16 C -0.145 4.145 17 C -0.195 4.195 18 C -0.238 4.238 19 C -0.133 4.133 20 N -0.074 5.074 21 C 0.009 3.991 22 C -0.170 4.170 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.171 4.171 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.180 0.820 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.157 -1.226 -16.954 18.079 hybrid contribution 0.386 -0.672 0.881 1.174 sum 6.542 -1.899 -16.073 17.457 Atomic orbital electron populations 1.22096 0.98065 0.99480 1.00892 1.18990 0.90999 0.94476 0.79543 0.91836 1.21330 1.31793 1.13041 0.90199 0.92182 1.24886 0.94923 0.94998 0.98943 1.69884 1.36360 1.22676 1.23743 0.86484 0.78613 0.79932 0.82305 1.20641 1.21126 1.19852 1.47920 1.47746 1.11837 1.22919 1.22258 1.01193 0.83091 1.00823 1.17029 0.79290 0.86102 0.81455 1.90656 1.62790 1.15103 1.76187 1.20478 1.07303 0.92959 0.93796 1.22262 1.04173 0.93986 0.99096 1.20799 1.06895 0.97128 0.98946 1.21731 1.06051 0.87584 0.97942 1.44161 1.40029 1.06472 1.16775 1.22633 0.97354 0.78930 1.00170 1.22769 0.99642 0.99508 0.95085 1.22468 0.94340 0.98582 1.00632 1.22363 0.97536 0.99972 0.96176 1.22532 0.94132 1.02090 0.98338 0.94985 0.88729 0.96912 0.92699 0.92892 0.90865 0.90860 0.81988 0.84652 0.82490 0.84861 0.90757 0.90677 0.90915 0.91131 0.91261 0.91601 0.90300 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.52 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.06 1.63 7.65 -52.48 -0.40 1.22 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.58 -12.84 2.75 -176.80 -0.49 -13.33 16 13 C 0.07 1.24 7.88 59.85 0.47 1.71 16 14 C 0.57 12.78 7.63 -12.86 -0.10 12.68 16 15 O -0.57 -14.12 13.77 5.19 0.07 -14.05 16 16 C -0.03 -0.58 6.73 -81.98 -0.55 -1.13 16 17 C -0.17 -2.67 8.74 -39.11 -0.34 -3.02 16 18 C -0.21 -2.88 10.81 -39.98 -0.43 -3.31 16 19 C 0.00 0.02 9.84 -16.91 -0.17 -0.15 16 20 N -0.40 -6.31 2.60 -104.62 -0.27 -6.58 16 21 C 0.11 1.59 3.48 -66.82 -0.23 1.36 16 22 C -0.13 -1.48 6.45 -25.07 -0.16 -1.64 16 23 C -0.12 -1.10 6.91 -24.74 -0.17 -1.27 16 24 C -0.12 -1.12 6.83 -25.07 -0.17 -1.30 16 25 C -0.13 -1.63 6.43 -25.61 -0.16 -1.80 16 26 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 27 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 0.90 7.47 -51.93 -0.39 0.51 16 31 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 32 H 0.07 1.12 5.11 -51.93 -0.27 0.85 16 33 H 0.16 2.31 4.41 -52.49 -0.23 2.08 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.16 1.57 7.87 -52.48 -0.41 1.16 16 36 H 0.13 2.38 5.50 -51.93 -0.29 2.09 16 37 H 0.07 0.78 6.96 -51.93 -0.36 0.42 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.94 7.67 -51.93 -0.40 0.54 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -31.11 340.36 -8.82 -39.93 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.62 Total: 4.80 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.25 Total: -7.47 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.13 Total: -44.50 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.11 -8.82 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181539559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.064 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds