Wall clock time and date at job start Tue Mar 31 2020 08:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47441 * 2 1 4 4 C 1.50699 * 109.46904 * 119.99879 * 2 1 3 5 5 H 1.08004 * 119.99767 * 120.00117 * 4 2 1 6 6 C 1.37871 * 120.00115 * 299.99675 * 4 2 1 7 7 N 1.31517 * 119.99948 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00158 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47130 * 89.99850 * 8 6 4 10 10 H 1.48499 * 109.47069 * 210.00466 * 8 6 4 11 11 H 1.48503 * 109.46826 * 329.99694 * 8 6 4 12 12 N 1.46501 * 109.47038 * 239.99912 * 2 1 3 13 13 C 1.46506 * 120.00000 * 300.00006 * 12 2 1 14 14 C 1.34772 * 120.00221 * 120.00235 * 12 2 1 15 15 O 1.21700 * 119.99878 * 354.63156 * 14 12 2 16 16 C 1.46674 * 120.00202 * 174.90287 * 14 12 2 17 17 C 1.37879 * 126.23258 * 352.63008 * 16 14 12 18 18 C 1.39839 * 107.08283 * 179.97438 * 17 16 14 19 19 C 1.35451 * 107.86492 * 359.97438 * 18 17 16 20 20 N 1.35529 * 108.87525 * 359.73584 * 19 18 17 21 21 C 1.46503 * 125.67944 * 180.26681 * 20 19 18 22 22 C 1.54266 * 110.03413 * 52.18602 * 21 20 19 23 23 C 1.54889 * 104.19514 * 217.10621 * 22 21 20 24 24 C 1.54890 * 102.74837 * 37.94116 * 23 22 21 25 25 C 1.53867 * 110.02863 * 295.01668 * 21 20 19 26 26 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47048 * 300.00178 * 1 2 3 28 28 H 1.09006 * 109.46792 * 60.00326 * 1 2 3 29 29 H 0.97001 * 119.99842 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47019 * 265.46961 * 13 12 2 31 31 H 1.09000 * 109.46834 * 25.46442 * 13 12 2 32 32 H 1.08996 * 109.46828 * 145.46448 * 13 12 2 33 33 H 1.07999 * 126.45556 * 359.97438 * 17 16 14 34 34 H 1.08002 * 126.06513 * 179.97438 * 18 17 16 35 35 H 1.08007 * 125.55974 * 180.02562 * 19 18 17 36 36 H 1.09005 * 110.01446 * 173.62676 * 21 20 19 37 37 H 1.09003 * 110.48182 * 335.78464 * 22 21 20 38 38 H 1.08998 * 110.48289 * 98.42670 * 22 21 20 39 39 H 1.09002 * 110.75184 * 279.62815 * 23 22 21 40 40 H 1.09002 * 110.91457 * 156.32889 * 23 22 21 41 41 H 1.08997 * 110.48553 * 203.37905 * 24 23 22 42 42 H 1.09006 * 110.59942 * 80.79314 * 24 23 22 43 43 H 1.09005 * 110.03304 * 238.56871 * 25 21 20 44 44 H 1.08996 * 110.03922 * 359.95467 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.0070 1.1540 -1.9427 16 6 3.3739 -0.7556 -3.2217 17 6 3.3319 -2.1177 -3.4318 18 6 4.0049 -2.3692 -4.6316 19 6 4.4362 -1.1828 -5.1227 20 7 4.0539 -0.1938 -4.2785 21 6 4.3233 1.2350 -4.4585 22 6 3.8639 1.6869 -5.8601 23 6 4.9349 2.7170 -6.2971 24 6 6.2454 2.1022 -5.7459 25 6 5.8375 1.4989 -4.3859 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7088 1.1614 3.4843 30 1 2.4556 -2.7362 -1.0424 31 1 0.7293 -2.3213 -0.9164 32 1 1.5448 -2.2658 -2.4976 33 1 2.8668 -2.8518 -2.7907 34 1 4.1542 -3.3375 -5.0859 35 1 4.9899 -1.0467 -6.0399 36 1 3.8065 1.8116 -3.6914 37 1 3.8458 0.8407 -6.5469 38 1 2.8820 2.1570 -5.8064 39 1 4.7436 3.6893 -5.8431 40 1 4.9743 2.8004 -7.3832 41 1 7.0014 2.8753 -5.6089 42 1 6.6141 1.3234 -6.4135 43 1 6.0555 2.2044 -3.5840 44 1 6.3718 0.5643 -4.2159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181539559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:35 Heat of formation + Delta-G solvation = 6.924426 kcal Electronic energy + Delta-G solvation = -23957.531217 eV Core-core repulsion = 20682.394185 eV Total energy + Delta-G solvation = -3275.137033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54674 -40.22452 -38.63195 -37.20195 -34.96458 -32.83885 -31.83685 -29.81046 -29.54107 -28.48519 -27.63894 -27.31615 -24.24657 -22.40442 -21.98154 -21.57257 -21.03476 -19.55730 -18.50627 -18.06794 -17.41323 -16.81056 -16.70324 -16.30784 -15.99980 -15.45851 -15.08428 -14.91766 -14.66053 -14.39936 -14.38627 -13.88820 -13.61332 -13.50171 -13.45757 -12.97892 -12.80500 -12.78206 -12.71445 -12.45939 -12.22652 -12.14887 -12.11057 -12.07793 -11.97168 -11.68886 -11.54186 -11.22024 -10.70865 -10.50793 -9.61322 -9.42872 -9.04186 -8.16427 -6.33582 0.59859 1.40760 1.41844 1.52397 1.76904 1.92297 2.35084 2.48187 2.56273 3.11274 3.44921 3.54838 3.72342 3.90626 4.18234 4.26553 4.34596 4.38676 4.42553 4.43890 4.52858 4.62659 4.67975 4.68883 4.72755 4.79269 4.85409 4.95885 4.97882 5.02055 5.11031 5.13199 5.18149 5.23683 5.33652 5.36758 5.44015 5.57521 5.64559 5.92432 6.04456 6.11341 6.13339 6.46086 6.73125 6.77657 7.26991 7.43206 8.88107 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.004265 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.526169 B = 6564.081293 C = 6984.492007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.265 3.735 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.261 1.261 12 N -0.585 5.585 13 C 0.070 3.930 14 C 0.560 3.440 15 O -0.612 6.612 16 C -0.083 4.083 17 C -0.157 4.157 18 C -0.215 4.215 19 C 0.023 3.977 20 N -0.406 5.406 21 C 0.102 3.898 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.130 4.130 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.199 0.801 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -4.877 -19.701 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.026 0.974 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.185 1.185 12 N -0.314 5.314 13 C -0.072 4.072 14 C 0.352 3.648 15 O -0.498 6.498 16 C -0.196 4.196 17 C -0.183 4.183 18 C -0.239 4.239 19 C -0.113 4.113 20 N -0.079 5.079 21 C 0.000 4.000 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.169 4.169 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.192 0.808 34 H 0.189 0.811 35 H 0.215 0.785 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.534 -3.786 -19.468 21.216 hybrid contribution -0.014 0.132 1.590 1.596 sum 7.520 -3.654 -17.878 19.736 Atomic orbital electron populations 1.21883 0.96927 1.00298 0.99928 1.18587 0.91803 0.92101 0.81209 0.97400 1.21552 1.32057 1.13140 0.91025 0.92174 1.25746 0.94967 0.95644 1.02007 1.70026 1.37192 1.23903 1.24509 0.85426 0.77765 0.79254 0.78402 1.20880 1.20316 1.18463 1.47882 1.48056 1.13484 1.21951 1.22489 1.01396 0.80522 1.02781 1.17699 0.78841 0.85862 0.82416 1.90628 1.64366 1.17262 1.77503 1.20070 1.11097 0.93961 0.94461 1.22521 1.03194 0.92724 0.99903 1.21212 1.06036 0.98764 0.97856 1.22488 1.04058 0.86697 0.98027 1.44333 1.39749 1.07293 1.16522 1.22638 0.98300 0.78289 1.00727 1.22745 0.99747 1.00599 0.93177 1.22475 0.93216 0.97468 1.02216 1.22348 0.97764 1.00721 0.94100 1.22500 0.92627 1.01615 1.00112 0.93088 0.91074 0.96398 0.92555 0.91862 0.90860 0.88018 0.80832 0.81134 0.78460 0.89618 0.89048 0.91931 0.91584 0.88327 0.90083 0.89384 0.92321 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.96 71.98 0.64 -6.01 16 2 C 0.26 14.52 2.63 44.24 0.12 14.64 16 3 H 0.01 0.52 6.91 -2.39 -0.02 0.51 16 4 C -0.54 -30.36 8.37 25.60 0.21 -30.15 16 5 H 0.06 3.30 7.65 -2.91 -0.02 3.28 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.67 16 8 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 12 N -0.59 -27.20 2.75 -831.50 -2.29 -29.49 16 13 C 0.07 2.44 7.88 127.77 1.01 3.45 16 14 C 0.56 26.50 7.63 86.45 0.66 27.16 16 15 O -0.61 -33.53 13.77 -4.35 -0.06 -33.59 16 16 C -0.08 -3.09 6.73 40.35 0.27 -2.82 16 17 C -0.16 -4.63 8.74 22.57 0.20 -4.43 16 18 C -0.22 -4.93 10.81 22.01 0.24 -4.69 16 19 C 0.02 0.51 9.84 83.48 0.82 1.33 16 20 N -0.41 -12.47 2.60 -484.92 -1.26 -13.74 16 21 C 0.10 3.01 3.48 45.71 0.16 3.17 16 22 C -0.12 -2.64 6.45 31.67 0.20 -2.43 16 23 C -0.12 -1.82 6.91 31.89 0.22 -1.60 16 24 C -0.11 -1.75 6.83 31.67 0.22 -1.53 16 25 C -0.13 -3.19 6.43 31.32 0.20 -2.98 16 26 H 0.05 2.31 6.66 -2.39 -0.02 2.30 16 27 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 28 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.06 2.07 7.47 -2.39 -0.02 2.05 16 31 H 0.07 2.53 6.43 -2.39 -0.02 2.52 16 32 H 0.10 2.95 5.11 -2.39 -0.01 2.94 16 33 H 0.17 4.52 4.41 -2.91 -0.01 4.51 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.20 2.80 7.87 -2.91 -0.02 2.78 16 36 H 0.09 3.38 5.50 -2.38 -0.01 3.36 16 37 H 0.09 1.61 6.96 -2.39 -0.02 1.59 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -73.40 340.36 5.27 -68.13 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.99 Total: 22.02 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.62 Total: -5.55 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -3.31 Total: -96.90 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.06 Total: -33.59 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -73.40 5.27 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181539559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.050 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds