Wall clock time and date at job start Tue Mar 31 2020 08:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47476 * 2 1 4 4 C 1.50700 * 109.47139 * 239.99675 * 2 1 3 5 5 H 1.07999 * 119.99697 * 239.99861 * 4 2 1 6 6 C 1.37875 * 120.00044 * 60.00289 * 4 2 1 7 7 N 1.31515 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00022 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46772 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47129 * 119.99466 * 8 6 4 11 11 H 1.48498 * 109.46897 * 240.00127 * 8 6 4 12 12 N 1.46501 * 109.47121 * 119.99710 * 2 1 3 13 13 C 1.46503 * 120.00207 * 59.99642 * 12 2 1 14 14 C 1.34781 * 120.00057 * 239.99797 * 12 2 1 15 15 O 1.21698 * 120.00055 * 7.78377 * 14 12 2 16 16 C 1.46680 * 120.00236 * 187.78270 * 14 12 2 17 17 C 1.37870 * 126.22879 * 353.16478 * 16 14 12 18 18 C 1.39839 * 107.08182 * 179.97438 * 17 16 14 19 19 C 1.35448 * 107.86638 * 359.97438 * 18 17 16 20 20 N 1.35537 * 108.86923 * 359.76614 * 19 18 17 21 21 C 1.46507 * 125.67356 * 180.26084 * 20 19 18 22 22 C 1.54263 * 110.03207 * 51.28365 * 21 20 19 23 23 C 1.54886 * 104.19370 * 217.10027 * 22 21 20 24 24 C 1.54890 * 102.74974 * 37.94106 * 23 22 21 25 25 C 1.53874 * 110.03350 * 294.10920 * 21 20 19 26 26 H 1.09005 * 109.46918 * 59.99893 * 1 2 3 27 27 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47288 * 300.00658 * 1 2 3 29 29 H 0.97001 * 119.99731 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.46985 * 246.68686 * 13 12 2 31 31 H 1.09002 * 109.46669 * 126.68577 * 13 12 2 32 32 H 1.08998 * 109.46526 * 6.69385 * 13 12 2 33 33 H 1.08000 * 126.45936 * 359.92638 * 17 16 14 34 34 H 1.08005 * 126.06546 * 179.97438 * 18 17 16 35 35 H 1.08000 * 125.56824 * 180.02562 * 19 18 17 36 36 H 1.09000 * 110.01209 * 172.71821 * 21 20 19 37 37 H 1.09003 * 110.48587 * 335.77612 * 22 21 20 38 38 H 1.08996 * 110.48905 * 98.42118 * 22 21 20 39 39 H 1.08997 * 110.75750 * 279.62795 * 23 22 21 40 40 H 1.09000 * 110.91715 * 156.32624 * 23 22 21 41 41 H 1.09001 * 110.49001 * 203.38452 * 24 23 22 42 42 H 1.09001 * 110.60023 * 80.79367 * 24 23 22 43 43 H 1.09003 * 110.03005 * 238.57068 * 25 21 20 44 44 H 1.08996 * 110.03291 * 359.95690 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 3.1464 -2.2872 -3.6036 10 1 1.1661 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4282 14 6 2.7932 -0.0355 2.0834 15 8 2.9712 1.1628 1.9676 16 6 3.4220 -0.7669 3.1885 17 6 3.2053 -2.0877 3.5191 18 6 4.0055 -2.3694 4.6308 19 6 4.6822 -1.2410 4.9523 20 7 4.3407 -0.2615 4.0801 21 6 4.8604 1.1083 4.0873 22 6 6.4024 1.0883 4.1264 23 6 6.7748 2.2848 5.0368 24 6 5.6749 2.2406 6.1264 25 6 4.3977 1.8409 5.3589 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 0.7082 1.1607 -3.4845 30 1 1.0193 -2.1650 2.3039 31 1 2.5714 -2.6737 1.5964 32 1 1.1391 -2.4841 0.5568 33 1 2.5421 -2.7750 3.0150 34 1 4.0720 -3.3183 5.1423 35 1 5.3830 -1.1396 5.7678 36 1 4.5156 1.6428 3.2021 37 1 6.7609 0.1540 4.5587 38 1 6.8113 1.2285 3.1259 39 1 6.7305 3.2214 4.4811 40 1 7.7616 2.1455 5.4782 41 1 5.5528 3.2217 6.5853 42 1 5.9146 1.4936 6.8832 43 1 3.8292 2.7314 5.0908 44 1 3.7860 1.1776 5.9703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181539581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:40 Heat of formation + Delta-G solvation = 24.154361 kcal Electronic energy + Delta-G solvation = -23968.847781 eV Core-core repulsion = 20694.457895 eV Total energy + Delta-G solvation = -3274.389887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.31565 -38.59704 -37.62278 -35.38306 -33.04751 -31.63865 -30.09564 -28.91119 -28.09955 -27.31324 -26.24234 -25.20421 -22.61493 -21.32420 -20.91111 -20.39152 -19.49726 -18.27677 -16.90476 -16.34014 -15.89616 -15.54982 -15.08697 -14.83771 -14.52706 -14.15226 -13.90309 -13.63877 -13.41464 -13.04658 -12.61115 -12.42049 -12.29189 -12.15852 -11.79962 -11.59703 -11.41522 -11.32560 -11.28406 -11.08539 -10.87701 -10.84879 -10.74504 -10.67978 -10.42676 -10.19696 -10.17880 -9.18496 -8.96856 -8.44502 -8.43112 -7.92349 -7.53999 -6.07511 -4.15513 1.95269 2.97526 3.06020 3.26276 3.34328 3.37995 3.97755 4.08821 4.37998 4.40838 4.45805 4.75788 5.07719 5.22292 5.23024 5.27241 5.30311 5.32528 5.39044 5.44644 5.63366 5.67048 5.70211 5.78150 5.86635 5.87800 6.02764 6.05460 6.12110 6.16488 6.33547 6.39568 6.48696 6.78254 6.85607 7.04666 7.11366 7.34679 7.46266 7.51109 7.59226 7.72416 8.02949 8.19217 8.52874 8.83074 9.05061 9.51181 10.97785 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.004353 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.128920 B = 6430.906580 C = 6861.699169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.576 5.576 13 C 0.072 3.928 14 C 0.574 3.426 15 O -0.565 6.565 16 C -0.031 4.031 17 C -0.174 4.174 18 C -0.214 4.214 19 C 0.001 3.999 20 N -0.401 5.401 21 C 0.111 3.889 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.132 4.132 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.535 -2.728 16.052 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.305 5.305 13 C -0.072 4.072 14 C 0.362 3.638 15 O -0.447 6.447 16 C -0.145 4.145 17 C -0.199 4.199 18 C -0.238 4.238 19 C -0.133 4.133 20 N -0.074 5.074 21 C 0.009 3.991 22 C -0.171 4.171 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.170 4.170 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.629 -1.615 15.777 17.599 hybrid contribution 0.305 -0.637 -0.799 1.067 sum 7.934 -2.252 14.978 17.098 Atomic orbital electron populations 1.22094 0.98014 0.99489 1.00873 1.19002 0.91061 0.94457 0.79478 0.91892 1.21383 1.31798 1.13077 0.90179 0.92074 1.24891 0.94929 0.94978 0.98957 1.69896 1.36360 1.22653 1.23654 0.86433 0.78613 0.79622 0.82702 1.19745 1.20898 1.20949 1.47920 1.48027 1.11741 1.22812 1.22219 1.00089 0.83339 1.01538 1.17032 0.79448 0.86215 0.81096 1.90655 1.63883 1.14504 1.75664 1.20470 1.01257 0.94653 0.98119 1.22428 1.03787 0.94408 0.99297 1.20802 1.03418 0.98225 1.01367 1.21729 1.04811 0.88739 0.98058 1.44153 1.31283 1.09697 1.22306 1.22629 0.93990 0.80186 1.02274 1.22771 0.93768 0.99425 1.01106 1.22466 0.98540 0.98368 0.96643 1.22362 0.94604 1.01473 0.97605 1.22527 0.98129 1.00899 0.95458 0.88779 0.95059 0.96915 0.92737 0.93247 0.91421 0.89912 0.81712 0.84687 0.82514 0.84865 0.90754 0.90573 0.90907 0.91124 0.91285 0.91604 0.90374 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.96 37.15 0.33 -3.22 16 2 C 0.26 6.73 2.57 -69.09 -0.18 6.56 16 3 H 0.06 1.88 6.93 -51.92 -0.36 1.52 16 4 C -0.53 -14.26 8.04 -34.44 -0.28 -14.54 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.58 -12.84 2.75 -176.81 -0.49 -13.33 16 13 C 0.07 1.26 7.60 59.85 0.46 1.72 16 14 C 0.57 12.81 7.62 -12.85 -0.10 12.71 16 15 O -0.56 -14.11 13.79 5.19 0.07 -14.04 16 16 C -0.03 -0.57 6.82 -81.98 -0.56 -1.13 16 17 C -0.17 -2.75 8.85 -39.12 -0.35 -3.09 16 18 C -0.21 -2.91 10.81 -39.98 -0.43 -3.34 16 19 C 0.00 0.02 9.87 -16.91 -0.17 -0.15 16 20 N -0.40 -6.38 2.60 -104.63 -0.27 -6.65 16 21 C 0.11 1.62 3.47 -66.81 -0.23 1.38 16 22 C -0.13 -1.55 6.45 -25.08 -0.16 -1.71 16 23 C -0.12 -1.13 6.91 -24.74 -0.17 -1.31 16 24 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 25 C -0.13 -1.60 6.44 -25.61 -0.16 -1.76 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 28 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 31 H 0.07 1.08 5.49 -51.93 -0.29 0.80 16 32 H 0.08 1.50 6.83 -51.93 -0.35 1.15 16 33 H 0.17 2.33 4.11 -52.49 -0.22 2.11 16 34 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.16 1.60 7.83 -52.49 -0.41 1.18 16 36 H 0.13 2.42 5.52 -51.93 -0.29 2.13 16 37 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -30.99 340.79 -8.87 -39.86 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.66 Total: 4.97 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.26 Total: -7.50 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.13 Total: -44.45 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.99 -8.87 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181539581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.011 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds