Wall clock time and date at job start Tue Mar 31 2020 08:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47476 * 2 1 4 4 C 1.50700 * 109.47139 * 239.99675 * 2 1 3 5 5 H 1.07999 * 119.99697 * 239.99861 * 4 2 1 6 6 C 1.37875 * 120.00044 * 60.00289 * 4 2 1 7 7 N 1.31515 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00022 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46772 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47129 * 119.99466 * 8 6 4 11 11 H 1.48498 * 109.46897 * 240.00127 * 8 6 4 12 12 N 1.46501 * 109.47121 * 119.99710 * 2 1 3 13 13 C 1.46503 * 120.00207 * 59.99642 * 12 2 1 14 14 C 1.34781 * 120.00057 * 239.99797 * 12 2 1 15 15 O 1.21698 * 120.00055 * 7.78377 * 14 12 2 16 16 C 1.46680 * 120.00236 * 187.78270 * 14 12 2 17 17 C 1.37870 * 126.22879 * 353.16478 * 16 14 12 18 18 C 1.39839 * 107.08182 * 179.97438 * 17 16 14 19 19 C 1.35448 * 107.86638 * 359.97438 * 18 17 16 20 20 N 1.35537 * 108.86923 * 359.76614 * 19 18 17 21 21 C 1.46507 * 125.67356 * 180.26084 * 20 19 18 22 22 C 1.54263 * 110.03207 * 51.28365 * 21 20 19 23 23 C 1.54886 * 104.19370 * 217.10027 * 22 21 20 24 24 C 1.54890 * 102.74974 * 37.94106 * 23 22 21 25 25 C 1.53874 * 110.03350 * 294.10920 * 21 20 19 26 26 H 1.09005 * 109.46918 * 59.99893 * 1 2 3 27 27 H 1.08998 * 109.47423 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47288 * 300.00658 * 1 2 3 29 29 H 0.97001 * 119.99731 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.46985 * 246.68686 * 13 12 2 31 31 H 1.09002 * 109.46669 * 126.68577 * 13 12 2 32 32 H 1.08998 * 109.46526 * 6.69385 * 13 12 2 33 33 H 1.08000 * 126.45936 * 359.92638 * 17 16 14 34 34 H 1.08005 * 126.06546 * 179.97438 * 18 17 16 35 35 H 1.08000 * 125.56824 * 180.02562 * 19 18 17 36 36 H 1.09000 * 110.01209 * 172.71821 * 21 20 19 37 37 H 1.09003 * 110.48587 * 335.77612 * 22 21 20 38 38 H 1.08996 * 110.48905 * 98.42118 * 22 21 20 39 39 H 1.08997 * 110.75750 * 279.62795 * 23 22 21 40 40 H 1.09000 * 110.91715 * 156.32624 * 23 22 21 41 41 H 1.09001 * 110.49001 * 203.38452 * 24 23 22 42 42 H 1.09001 * 110.60023 * 80.79367 * 24 23 22 43 43 H 1.09003 * 110.03005 * 238.57068 * 25 21 20 44 44 H 1.08996 * 110.03291 * 359.95690 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 3.1464 -2.2872 -3.6036 10 1 1.1661 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4282 14 6 2.7932 -0.0355 2.0834 15 8 2.9712 1.1628 1.9676 16 6 3.4220 -0.7669 3.1885 17 6 3.2053 -2.0877 3.5191 18 6 4.0055 -2.3694 4.6308 19 6 4.6822 -1.2410 4.9523 20 7 4.3407 -0.2615 4.0801 21 6 4.8604 1.1083 4.0873 22 6 6.4024 1.0883 4.1264 23 6 6.7748 2.2848 5.0368 24 6 5.6749 2.2406 6.1264 25 6 4.3977 1.8409 5.3589 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 0.7082 1.1607 -3.4845 30 1 1.0193 -2.1650 2.3039 31 1 2.5714 -2.6737 1.5964 32 1 1.1391 -2.4841 0.5568 33 1 2.5421 -2.7750 3.0150 34 1 4.0720 -3.3183 5.1423 35 1 5.3830 -1.1396 5.7678 36 1 4.5156 1.6428 3.2021 37 1 6.7609 0.1540 4.5587 38 1 6.8113 1.2285 3.1259 39 1 6.7305 3.2214 4.4811 40 1 7.7616 2.1455 5.4782 41 1 5.5528 3.2217 6.5853 42 1 5.9146 1.4936 6.8832 43 1 3.8292 2.7314 5.0908 44 1 3.7860 1.1776 5.9703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181539581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:39 Heat of formation + Delta-G solvation = 7.067656 kcal Electronic energy + Delta-G solvation = -23969.588717 eV Core-core repulsion = 20694.457895 eV Total energy + Delta-G solvation = -3275.130822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53260 -40.22165 -38.63000 -37.20285 -34.96444 -32.83115 -31.83352 -29.81864 -29.53131 -28.49519 -27.63118 -27.32037 -24.23628 -22.40316 -21.98665 -21.57943 -21.02905 -19.56685 -18.49265 -18.07942 -17.41071 -16.85539 -16.68004 -16.28455 -16.00191 -15.43497 -15.14736 -14.82055 -14.73712 -14.41573 -14.26861 -13.88526 -13.64540 -13.49986 -13.44240 -12.99749 -12.82924 -12.76828 -12.70390 -12.44425 -12.23468 -12.14478 -12.12809 -12.08391 -11.94875 -11.69288 -11.54285 -11.21251 -10.70350 -10.51269 -9.62121 -9.41317 -9.03964 -8.16723 -6.33805 0.60881 1.40368 1.41666 1.53637 1.75995 1.93880 2.34726 2.49652 2.56843 3.11133 3.44530 3.54574 3.72684 3.90470 4.18364 4.26669 4.33792 4.39282 4.43027 4.45580 4.52473 4.63494 4.66718 4.69717 4.71833 4.78914 4.86961 4.95563 4.97442 5.02326 5.11206 5.13084 5.18367 5.25076 5.33811 5.36463 5.44701 5.56973 5.64853 5.93307 6.05072 6.12166 6.13436 6.46542 6.73394 6.77817 7.26932 7.43089 8.88118 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.004353 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.128920 B = 6430.906580 C = 6861.699169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.265 3.735 3 H 0.007 0.993 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.586 5.586 13 C 0.071 3.929 14 C 0.561 3.439 15 O -0.612 6.612 16 C -0.083 4.083 17 C -0.160 4.160 18 C -0.216 4.216 19 C 0.021 3.979 20 N -0.407 5.407 21 C 0.102 3.898 22 C -0.127 4.127 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.128 4.128 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.171 0.829 35 H 0.198 0.802 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 -5.344 18.352 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.197 1.197 11 H -0.211 1.211 12 N -0.315 5.315 13 C -0.071 4.071 14 C 0.352 3.648 15 O -0.497 6.497 16 C -0.196 4.196 17 C -0.186 4.186 18 C -0.240 4.240 19 C -0.114 4.114 20 N -0.080 5.080 21 C 0.001 3.999 22 C -0.165 4.165 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.166 4.166 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.196 0.804 34 H 0.188 0.812 35 H 0.215 0.785 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.271 -4.261 18.090 20.770 hybrid contribution -0.191 0.192 -1.442 1.467 sum 9.080 -4.070 16.649 19.395 Atomic orbital electron populations 1.21883 0.96948 1.00282 0.99854 1.18595 0.91802 0.92079 0.81165 0.97479 1.21588 1.32027 1.13138 0.90950 0.92066 1.25751 0.94977 0.95618 1.02024 1.70037 1.37223 1.23910 1.24454 0.85363 0.78271 0.78460 0.78662 1.18885 1.19737 1.21127 1.47883 1.48336 1.13411 1.21836 1.22457 1.01443 0.80800 1.02365 1.17692 0.79086 0.86016 0.81968 1.90626 1.65374 1.16660 1.77076 1.20083 1.04447 0.95861 0.99225 1.22704 1.03355 0.93056 0.99504 1.21221 1.02476 0.99724 1.00553 1.22482 1.03891 0.87647 0.97366 1.44327 1.30874 1.10471 1.22311 1.22626 0.95980 0.79889 1.01451 1.22755 0.91271 1.01428 1.01063 1.22471 0.99964 0.96829 0.96113 1.22347 0.92283 1.02864 0.97407 1.22486 0.99704 0.99808 0.94604 0.91119 0.93152 0.96515 0.92559 0.90622 0.89438 0.90466 0.80367 0.81159 0.78537 0.89760 0.89119 0.92307 0.91615 0.88405 0.89938 0.89384 0.92107 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 8.96 71.98 0.65 -5.98 16 2 C 0.27 14.51 2.57 44.24 0.11 14.63 16 3 H 0.01 0.47 6.93 -2.38 -0.02 0.45 16 4 C -0.54 -30.12 8.04 25.60 0.21 -29.92 16 5 H 0.06 3.34 7.65 -2.91 -0.02 3.32 16 6 C 0.02 0.89 5.30 84.65 0.45 1.33 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 12 N -0.59 -27.17 2.75 -831.50 -2.29 -29.46 16 13 C 0.07 2.46 7.60 127.77 0.97 3.43 16 14 C 0.56 26.54 7.62 86.45 0.66 27.20 16 15 O -0.61 -33.52 13.79 -4.34 -0.06 -33.58 16 16 C -0.08 -3.12 6.82 40.35 0.28 -2.84 16 17 C -0.16 -4.71 8.85 22.57 0.20 -4.51 16 18 C -0.22 -5.00 10.81 22.01 0.24 -4.76 16 19 C 0.02 0.49 9.87 83.48 0.82 1.31 16 20 N -0.41 -12.67 2.60 -484.93 -1.26 -13.93 16 21 C 0.10 3.06 3.47 45.71 0.16 3.22 16 22 C -0.13 -2.86 6.45 31.67 0.20 -2.65 16 23 C -0.12 -1.90 6.91 31.88 0.22 -1.68 16 24 C -0.11 -1.73 6.83 31.67 0.22 -1.52 16 25 C -0.13 -3.06 6.44 31.32 0.20 -2.85 16 26 H 0.07 3.91 6.07 -2.38 -0.01 3.89 16 27 H 0.05 2.28 7.21 -2.39 -0.02 2.27 16 28 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.08 2.21 7.34 -2.39 -0.02 2.19 16 31 H 0.09 2.67 5.49 -2.39 -0.01 2.66 16 32 H 0.08 2.75 6.83 -2.39 -0.02 2.73 16 33 H 0.18 4.55 4.11 -2.91 -0.01 4.54 16 34 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.20 2.87 7.83 -2.91 -0.02 2.85 16 36 H 0.08 3.38 5.52 -2.39 -0.01 3.37 16 37 H 0.09 1.72 6.90 -2.39 -0.02 1.70 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.69 7.69 -2.39 -0.02 1.67 16 Total: -1.00 -73.20 340.79 5.23 -67.97 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.99 Total: 22.39 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.58 Total: -5.57 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.31 Total: -96.87 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.06 Total: -33.58 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.20 5.23 -67.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181539581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.033 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds