Wall clock time and date at job start Tue Mar 31 2020 07:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47650 * 2 1 4 4 N 1.46904 * 109.46992 * 120.00120 * 2 1 3 5 5 C 1.46900 * 110.99696 * 274.99943 * 4 2 1 6 6 C 1.50701 * 109.46641 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00661 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99725 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00163 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99471 * 359.97438 * 9 8 6 11 11 C 1.38948 * 119.99848 * 180.02562 * 9 8 6 12 12 N 1.31406 * 120.00139 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99654 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47003 * 59.99966 * 13 11 9 15 15 H 1.48504 * 109.47154 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47154 * 300.00139 * 13 11 9 17 17 C 1.53002 * 109.46989 * 239.99855 * 2 1 3 18 18 C 1.52992 * 109.47323 * 54.67318 * 17 2 1 19 19 C 1.53002 * 109.47349 * 294.66842 * 17 2 1 20 20 C 1.50704 * 109.46852 * 174.67261 * 17 2 1 21 21 C 1.38239 * 119.99793 * 173.90690 * 20 17 2 22 22 C 1.38231 * 120.00036 * 180.02562 * 21 20 17 23 23 C 1.38236 * 119.99849 * 359.95440 * 22 21 20 24 24 C 1.38241 * 120.00117 * 0.27617 * 23 22 21 25 25 C 1.38229 * 119.99689 * 359.51343 * 24 23 22 26 26 H 1.09001 * 109.47068 * 174.56698 * 1 2 3 27 27 H 1.08996 * 109.47233 * 294.56042 * 1 2 3 28 28 H 1.09001 * 109.47098 * 54.56392 * 1 2 3 29 29 H 1.00897 * 110.99954 * 38.95094 * 4 2 1 30 30 H 1.09002 * 109.47312 * 299.99505 * 5 4 2 31 31 H 1.08996 * 109.47188 * 60.00549 * 5 4 2 32 32 H 0.97000 * 119.99855 * 359.97438 * 8 6 5 33 33 H 0.97006 * 119.99779 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47381 * 179.97438 * 18 17 2 35 35 H 1.09007 * 109.47307 * 300.00136 * 18 17 2 36 36 H 1.09003 * 109.47355 * 59.99329 * 18 17 2 37 37 H 1.08996 * 109.47164 * 300.00665 * 19 17 2 38 38 H 1.09005 * 109.46752 * 59.99980 * 19 17 2 39 39 H 1.09000 * 109.47183 * 180.02562 * 19 17 2 40 40 H 1.08004 * 119.99776 * 359.97438 * 21 20 17 41 41 H 1.07996 * 120.00439 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00163 * 180.02562 * 23 22 21 43 43 H 1.07993 * 119.99772 * 179.72570 * 24 23 22 44 44 H 1.08006 * 120.00180 * 180.24877 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5216 3.5557 7 8 2.8696 -1.6983 3.4698 8 7 2.7295 0.1208 4.7322 9 6 3.1904 -0.5560 5.8318 10 1 3.4399 -1.6040 5.7553 11 6 3.3353 0.1061 7.0447 12 7 3.0312 1.3811 7.1377 13 14 3.9626 -0.8163 8.5431 14 1 5.3188 -1.3522 8.2626 15 1 4.0255 0.1087 9.7033 16 1 3.0415 -1.9387 8.8549 17 6 2.0400 -0.7213 -1.2493 18 6 1.4236 -0.0816 -2.4949 19 6 1.6423 -2.1973 -1.1840 20 6 3.5412 -0.6081 -1.3170 21 6 4.2425 -1.2906 -2.2934 22 6 5.6195 -1.1872 -2.3552 23 6 6.2953 -0.4005 -1.4412 24 6 5.5944 0.2783 -0.4618 25 6 4.2170 0.1783 -0.4027 26 1 -0.3633 -1.0231 -0.0973 27 1 -0.3633 0.4271 0.9346 28 1 -0.3633 0.5958 -0.8373 29 1 1.4495 -1.4979 1.4100 30 1 2.7589 1.0461 2.1183 31 1 1.0870 0.6162 2.5525 32 1 2.5057 1.0621 4.8006 33 1 3.1321 1.8432 7.9847 34 1 1.7873 -0.5952 -3.3849 35 1 0.3377 -0.1634 -2.4459 36 1 1.7068 0.9699 -2.5413 37 1 2.0814 -2.6530 -0.2966 38 1 0.5565 -2.2792 -1.1350 39 1 2.0061 -2.7112 -2.0738 40 1 3.7145 -1.9053 -3.0074 41 1 6.1675 -1.7207 -3.1177 42 1 7.3711 -0.3193 -1.4897 43 1 6.1228 0.8893 0.2549 44 1 3.6690 0.7118 0.3599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181793560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:39 Heat of formation + Delta-G solvation = -15.954713 kcal Electronic energy + Delta-G solvation = -23533.205030 eV Core-core repulsion = 20257.075883 eV Total energy + Delta-G solvation = -3276.129147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 12.59 seconds Orbital eigenvalues (eV) -40.07866 -38.23755 -37.20379 -34.22824 -33.58687 -31.20160 -30.65422 -30.38916 -28.64810 -27.42809 -26.20126 -24.53258 -23.40939 -22.30284 -21.29743 -19.36823 -18.59443 -17.88060 -17.05185 -15.94271 -15.26584 -15.13562 -14.89556 -14.68595 -14.39074 -14.07420 -13.90188 -13.64854 -13.48344 -13.28653 -13.00915 -12.48053 -12.32754 -12.14792 -12.08443 -11.88030 -11.72452 -11.52995 -11.48463 -11.23649 -11.06685 -10.97968 -10.81760 -10.42692 -10.40063 -10.21161 -10.15814 -9.47317 -8.63609 -8.44523 -8.38736 -7.96046 -7.89920 -6.39365 -3.79947 1.62949 1.69987 3.21699 3.27041 3.31686 3.94350 4.04951 4.12514 4.35301 4.62967 4.76056 5.14235 5.16023 5.19002 5.23312 5.26165 5.31842 5.33989 5.35877 5.40326 5.60454 5.67176 5.71206 5.75150 5.78137 5.86206 5.88726 5.96975 6.02384 6.05060 6.11897 6.22785 6.29896 6.33450 6.34531 6.49900 6.71307 6.81164 6.95108 7.27235 7.31826 7.57215 7.73998 8.08988 8.64368 9.20652 9.57364 10.09294 10.78415 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.003940 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.045119 B = 7104.854664 C = 7926.538901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 H 0.078 0.922 4 N -0.657 5.657 5 C 0.048 3.952 6 C 0.442 3.558 7 O -0.581 6.581 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.102 0.898 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.011 4.011 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.054 4.054 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.122 4.122 25 C -0.089 4.089 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.350 0.650 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 0.644 -18.824 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 H 0.097 0.903 4 N -0.289 5.289 5 C -0.084 4.084 6 C 0.228 3.772 7 O -0.465 6.465 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.545 5.545 13 Si 0.757 3.243 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.011 4.011 18 C -0.198 4.198 19 C -0.198 4.198 20 C -0.054 4.054 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.170 0.830 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.511 0.050 -18.849 18.910 hybrid contribution -0.669 0.310 1.185 1.395 sum -2.180 0.360 -17.665 17.803 Atomic orbital electron populations 1.22637 0.97470 1.02465 1.02071 1.21616 0.92252 0.97766 0.90520 0.90345 1.60276 1.57564 1.08896 1.02155 1.21714 0.99742 0.95794 0.91167 1.19811 0.85052 0.88245 0.84132 1.90528 1.55086 1.16285 1.84564 1.41860 1.57942 1.12417 1.07984 1.19644 1.39948 0.96403 0.86809 0.88043 1.25237 0.97699 0.95758 0.99197 1.69603 1.48787 1.08854 1.27208 0.85937 0.79473 0.78823 0.80097 1.19898 1.20996 1.19954 1.19452 0.91153 0.96317 0.94221 1.21958 1.00543 1.00642 0.96647 1.21920 1.00734 0.94489 1.02687 1.19604 0.94508 0.96397 0.94860 1.20887 0.94033 1.00162 0.98910 1.20984 0.94409 0.99763 0.99504 1.21055 0.99410 0.98239 0.96065 1.21181 0.94691 0.99951 0.98172 1.21235 0.93911 0.98073 0.97411 0.91991 0.92578 0.91971 0.82953 0.89923 0.93931 0.77534 0.91876 0.92532 0.92096 0.92665 0.90912 0.92703 0.92997 0.86826 0.86858 0.86839 0.86515 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 8.37 37.16 0.31 -1.65 16 2 C 0.09 1.08 1.21 -67.71 -0.08 0.99 16 3 H 0.08 0.95 6.52 -51.93 -0.34 0.61 16 4 N -0.66 -10.24 3.93 -107.99 -0.42 -10.66 16 5 C 0.05 0.84 5.67 -4.98 -0.03 0.81 16 6 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 7 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 8 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 9 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 10 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 13 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 C -0.01 -0.12 0.46 -155.66 -0.07 -0.19 16 18 C -0.14 -1.30 7.85 37.15 0.29 -1.01 16 19 C -0.14 -1.60 7.60 37.16 0.28 -1.32 16 20 C -0.05 -0.71 4.64 -104.62 -0.49 -1.20 16 21 C -0.12 -1.51 8.77 -39.58 -0.35 -1.86 16 22 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 23 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 24 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 25 C -0.09 -1.30 8.52 -39.59 -0.34 -1.63 16 26 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 27 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 28 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 29 H 0.35 5.79 7.40 -39.29 -0.29 5.50 16 30 H 0.08 1.33 6.95 -51.93 -0.36 0.97 16 31 H 0.04 0.67 7.36 -51.93 -0.38 0.29 16 32 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.06 0.49 7.77 -51.93 -0.40 0.09 16 35 H 0.06 0.50 6.47 -51.92 -0.34 0.17 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.01 7.12 -51.93 -0.37 0.64 16 38 H 0.05 0.55 6.46 -51.93 -0.34 0.22 16 39 H 0.05 0.53 7.07 -51.93 -0.37 0.17 16 40 H 0.11 1.20 7.11 -52.48 -0.37 0.82 16 41 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.13 1.91 4.01 -52.48 -0.21 1.70 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -30.86 345.43 -7.82 -38.69 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -6.35 Total: 15.56 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.99 Total: -10.93 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.24 Total: -49.03 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.86 -7.82 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181793560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.731 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.59 seconds