Wall clock time and date at job start Tue Mar 31 2020 07:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47650 * 2 1 4 4 N 1.46904 * 109.46992 * 120.00120 * 2 1 3 5 5 C 1.46900 * 110.99696 * 274.99943 * 4 2 1 6 6 C 1.50701 * 109.46641 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00661 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99725 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00163 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99471 * 359.97438 * 9 8 6 11 11 C 1.38948 * 119.99848 * 180.02562 * 9 8 6 12 12 N 1.31406 * 120.00139 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99654 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47003 * 59.99966 * 13 11 9 15 15 H 1.48504 * 109.47154 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47154 * 300.00139 * 13 11 9 17 17 C 1.53002 * 109.46989 * 239.99855 * 2 1 3 18 18 C 1.52992 * 109.47323 * 54.67318 * 17 2 1 19 19 C 1.53002 * 109.47349 * 294.66842 * 17 2 1 20 20 C 1.50704 * 109.46852 * 174.67261 * 17 2 1 21 21 C 1.38239 * 119.99793 * 173.90690 * 20 17 2 22 22 C 1.38231 * 120.00036 * 180.02562 * 21 20 17 23 23 C 1.38236 * 119.99849 * 359.95440 * 22 21 20 24 24 C 1.38241 * 120.00117 * 0.27617 * 23 22 21 25 25 C 1.38229 * 119.99689 * 359.51343 * 24 23 22 26 26 H 1.09001 * 109.47068 * 174.56698 * 1 2 3 27 27 H 1.08996 * 109.47233 * 294.56042 * 1 2 3 28 28 H 1.09001 * 109.47098 * 54.56392 * 1 2 3 29 29 H 1.00897 * 110.99954 * 38.95094 * 4 2 1 30 30 H 1.09002 * 109.47312 * 299.99505 * 5 4 2 31 31 H 1.08996 * 109.47188 * 60.00549 * 5 4 2 32 32 H 0.97000 * 119.99855 * 359.97438 * 8 6 5 33 33 H 0.97006 * 119.99779 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47381 * 179.97438 * 18 17 2 35 35 H 1.09007 * 109.47307 * 300.00136 * 18 17 2 36 36 H 1.09003 * 109.47355 * 59.99329 * 18 17 2 37 37 H 1.08996 * 109.47164 * 300.00665 * 19 17 2 38 38 H 1.09005 * 109.46752 * 59.99980 * 19 17 2 39 39 H 1.09000 * 109.47183 * 180.02562 * 19 17 2 40 40 H 1.08004 * 119.99776 * 359.97438 * 21 20 17 41 41 H 1.07996 * 120.00439 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00163 * 180.02562 * 23 22 21 43 43 H 1.07993 * 119.99772 * 179.72570 * 24 23 22 44 44 H 1.08006 * 120.00180 * 180.24877 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5216 3.5557 7 8 2.8696 -1.6983 3.4698 8 7 2.7295 0.1208 4.7322 9 6 3.1904 -0.5560 5.8318 10 1 3.4399 -1.6040 5.7553 11 6 3.3353 0.1061 7.0447 12 7 3.0312 1.3811 7.1377 13 14 3.9626 -0.8163 8.5431 14 1 5.3188 -1.3522 8.2626 15 1 4.0255 0.1087 9.7033 16 1 3.0415 -1.9387 8.8549 17 6 2.0400 -0.7213 -1.2493 18 6 1.4236 -0.0816 -2.4949 19 6 1.6423 -2.1973 -1.1840 20 6 3.5412 -0.6081 -1.3170 21 6 4.2425 -1.2906 -2.2934 22 6 5.6195 -1.1872 -2.3552 23 6 6.2953 -0.4005 -1.4412 24 6 5.5944 0.2783 -0.4618 25 6 4.2170 0.1783 -0.4027 26 1 -0.3633 -1.0231 -0.0973 27 1 -0.3633 0.4271 0.9346 28 1 -0.3633 0.5958 -0.8373 29 1 1.4495 -1.4979 1.4100 30 1 2.7589 1.0461 2.1183 31 1 1.0870 0.6162 2.5525 32 1 2.5057 1.0621 4.8006 33 1 3.1321 1.8432 7.9847 34 1 1.7873 -0.5952 -3.3849 35 1 0.3377 -0.1634 -2.4459 36 1 1.7068 0.9699 -2.5413 37 1 2.0814 -2.6530 -0.2966 38 1 0.5565 -2.2792 -1.1350 39 1 2.0061 -2.7112 -2.0738 40 1 3.7145 -1.9053 -3.0074 41 1 6.1675 -1.7207 -3.1177 42 1 7.3711 -0.3193 -1.4897 43 1 6.1228 0.8893 0.2549 44 1 3.6690 0.7118 0.3599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181793560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:30 Heat of formation + Delta-G solvation = -34.796542 kcal Electronic energy + Delta-G solvation = -23534.022073 eV Core-core repulsion = 20257.075883 eV Total energy + Delta-G solvation = -3276.946190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 8.38 seconds Orbital eigenvalues (eV) -41.09739 -40.00451 -38.32956 -36.03038 -35.00690 -33.24771 -31.66397 -31.43146 -29.68164 -28.43093 -27.58124 -26.03937 -24.66973 -23.29191 -22.30535 -21.15235 -19.96157 -19.58044 -18.18831 -17.54041 -16.70499 -16.41148 -16.18636 -15.93108 -15.84373 -15.50465 -15.20178 -14.85416 -14.68452 -14.28823 -14.06066 -14.00630 -13.55150 -13.34543 -13.14603 -13.12726 -13.03911 -12.83415 -12.75701 -12.43688 -12.41915 -12.14081 -12.10119 -12.01386 -11.75999 -11.50099 -11.34853 -11.13015 -10.31330 -10.00949 -9.65716 -9.42962 -9.14108 -8.46361 -5.94949 0.62674 0.68596 1.39148 1.40702 1.51663 2.06734 2.28962 2.94691 3.05567 3.20935 3.54578 3.72579 3.85783 4.18255 4.24767 4.29127 4.33697 4.35560 4.43838 4.48222 4.50542 4.51882 4.59616 4.73241 4.84633 4.85941 4.90197 4.97950 5.07693 5.10494 5.19508 5.24382 5.30726 5.35682 5.40532 5.48347 5.58222 5.73240 5.78977 5.91880 5.95681 6.18317 6.29281 6.49308 6.61080 7.13238 7.57202 8.13039 8.70919 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.003940 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.045119 B = 7104.854664 C = 7926.538901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 H 0.079 0.921 4 N -0.667 5.667 5 C 0.065 3.935 6 C 0.440 3.560 7 O -0.621 6.621 8 N -0.575 5.575 9 C -0.333 4.333 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.991 3.009 14 H -0.273 1.273 15 H -0.270 1.270 16 H -0.271 1.271 17 C -0.007 4.007 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.062 4.062 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.112 4.112 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.343 0.657 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.395 0.605 33 H 0.277 0.723 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 0.734 -20.262 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.019 4.019 3 H 0.097 0.903 4 N -0.298 5.298 5 C -0.067 4.067 6 C 0.228 3.772 7 O -0.507 6.507 8 N -0.212 5.212 9 C -0.463 4.463 10 H 0.095 0.905 11 C -0.211 4.211 12 N -0.562 5.562 13 Si 0.815 3.185 14 H -0.199 1.199 15 H -0.194 1.194 16 H -0.197 1.197 17 C -0.008 4.008 18 C -0.193 4.193 19 C -0.195 4.195 20 C -0.062 4.062 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.130 4.130 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.163 0.837 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.133 0.867 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.161 0.173 -20.307 20.423 hybrid contribution -0.450 0.268 1.562 1.648 sum -2.610 0.440 -18.745 18.931 Atomic orbital electron populations 1.22577 0.95768 1.03090 1.02629 1.21690 0.93541 0.97477 0.89229 0.90323 1.60262 1.58404 1.08740 1.02439 1.21535 1.00694 0.95417 0.89077 1.20874 0.83296 0.87997 0.85075 1.90493 1.56455 1.18364 1.85404 1.41931 1.58475 1.12547 1.08250 1.19610 1.42189 0.95908 0.88601 0.90485 1.26006 0.97238 0.96596 1.01307 1.69665 1.48685 1.09679 1.28152 0.85019 0.78692 0.77881 0.76924 1.19859 1.19393 1.19668 1.19474 0.90129 0.96415 0.94785 1.21925 1.01319 1.00463 0.95563 1.21882 1.01518 0.94299 1.01763 1.19872 0.95691 0.95991 0.94645 1.21193 0.94376 0.99989 0.98968 1.21353 0.94700 0.99238 0.99629 1.21322 1.00456 0.98132 0.95858 1.21359 0.94988 1.00865 0.99052 1.21298 0.94254 0.99284 0.98127 0.91633 0.93274 0.89831 0.83736 0.88538 0.91803 0.77082 0.91321 0.91605 0.90568 0.92671 0.93937 0.91228 0.91789 0.84686 0.84281 0.85112 0.86710 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 8.37 71.98 0.60 -2.79 16 2 C 0.09 2.06 1.21 44.91 0.05 2.12 16 3 H 0.08 1.81 6.52 -2.39 -0.02 1.80 16 4 N -0.67 -20.74 3.93 -495.58 -1.95 -22.69 16 5 C 0.07 2.25 5.67 85.56 0.49 2.74 16 6 C 0.44 21.23 7.82 87.66 0.69 21.92 16 7 O -0.62 -34.98 15.78 -3.06 -0.05 -35.03 16 8 N -0.57 -29.95 5.29 -306.98 -1.62 -31.58 16 9 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 10 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 11 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 12 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 13 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 C -0.01 -0.16 0.46 -52.93 -0.02 -0.18 16 18 C -0.14 -2.11 7.85 71.98 0.56 -1.55 16 19 C -0.14 -2.90 7.60 71.98 0.55 -2.35 16 20 C -0.06 -1.58 4.64 -19.86 -0.09 -1.68 16 21 C -0.13 -2.93 8.77 22.27 0.20 -2.74 16 22 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 23 C -0.14 -3.51 10.05 22.27 0.22 -3.29 16 24 C -0.14 -4.18 10.05 22.27 0.22 -3.96 16 25 C -0.11 -3.30 8.52 22.27 0.19 -3.11 16 26 H 0.06 1.18 6.34 -2.39 -0.02 1.17 16 27 H 0.05 0.99 7.35 -2.39 -0.02 0.98 16 28 H 0.08 1.22 6.68 -2.39 -0.02 1.20 16 29 H 0.34 11.44 7.40 -89.70 -0.66 10.78 16 30 H 0.10 3.09 6.95 -2.39 -0.02 3.07 16 31 H 0.06 1.95 7.36 -2.39 -0.02 1.94 16 32 H 0.40 19.60 7.90 -92.71 -0.73 18.86 16 33 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 34 H 0.06 0.92 7.77 -2.39 -0.02 0.91 16 35 H 0.08 0.97 6.47 -2.38 -0.02 0.95 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.04 1.16 7.12 -2.39 -0.02 1.14 16 38 H 0.07 1.24 6.46 -2.38 -0.02 1.23 16 39 H 0.06 1.17 7.07 -2.39 -0.02 1.15 16 40 H 0.14 2.45 7.11 -2.91 -0.02 2.43 16 41 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.11 3.19 8.06 -2.91 -0.02 3.16 16 44 H 0.12 3.59 4.01 -2.91 -0.01 3.58 16 Total: -1.00 -67.68 345.43 3.48 -64.20 By element: Atomic # 1 Polarization: 46.08 SS G_CDS: -0.37 Total: 45.71 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.16 Total: -16.23 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.29 Total: -104.21 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.05 Total: -35.03 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.68 3.48 -64.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181793560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.403 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.38 seconds