Wall clock time and date at job start Tue Mar 31 2020 07:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21289 * 120.00394 * 2 1 4 4 N 1.34781 * 119.99893 * 180.02562 * 2 1 3 5 5 C 1.39919 * 120.00269 * 185.27474 * 4 2 1 6 6 C 1.38874 * 120.06942 * 33.28575 * 5 4 2 7 7 C 1.38112 * 119.93098 * 180.02562 * 6 5 4 8 8 C 1.38285 * 120.07014 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.93127 * 179.97438 * 8 7 6 10 10 H 1.08992 * 109.46975 * 339.99311 * 9 8 7 11 11 C 1.52996 * 109.47437 * 99.99654 * 9 8 7 12 12 N 1.46907 * 109.47039 * 219.99748 * 9 8 7 13 13 C 1.46896 * 110.99838 * 154.99616 * 12 9 8 14 14 C 1.53006 * 109.46799 * 179.97438 * 13 12 9 15 15 C 1.52996 * 109.46986 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47019 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00037 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00260 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00028 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46957 * 90.00072 * 20 18 16 22 22 H 1.48499 * 109.47305 * 210.00124 * 20 18 16 23 23 H 1.48494 * 109.46945 * 330.00476 * 20 18 16 24 24 C 1.38286 * 120.14028 * 0.25280 * 8 7 6 25 25 C 1.38119 * 120.06900 * 359.49246 * 24 8 7 26 26 H 1.08993 * 109.46803 * 239.99564 * 1 2 3 27 27 H 1.08998 * 109.46848 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47047 * 119.99113 * 1 2 3 29 29 H 0.97003 * 119.99930 * 5.27006 * 4 2 1 30 30 H 1.08004 * 120.03470 * 359.97438 * 6 5 4 31 31 H 1.07999 * 119.97046 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47172 * 59.99548 * 11 9 8 33 33 H 1.09001 * 109.47035 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47132 * 299.99813 * 11 9 8 35 35 H 1.00895 * 110.99586 * 31.04263 * 12 9 8 36 36 H 1.09003 * 109.47129 * 60.00362 * 13 12 9 37 37 H 1.08997 * 109.47214 * 300.00020 * 13 12 9 38 38 H 1.08997 * 109.47369 * 300.00066 * 14 13 12 39 39 H 1.08994 * 109.46962 * 60.00096 * 14 13 12 40 40 H 1.09002 * 109.47475 * 300.00286 * 15 14 13 41 41 H 1.09003 * 109.47123 * 60.00392 * 15 14 13 42 42 H 0.96998 * 119.99750 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.96466 * 179.74695 * 24 8 7 44 44 H 1.07997 * 120.03639 * 180.25365 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5757 -1.1700 0.1109 6 6 4.2150 -0.1983 0.8697 7 6 5.5919 -0.2034 0.9772 8 6 6.3338 -1.1749 0.3308 9 6 7.8361 -1.1771 0.4498 10 1 8.1774 -0.1895 0.7595 11 6 8.2638 -2.2140 1.4904 12 7 8.4299 -1.5149 -0.8508 13 6 9.7911 -0.9746 -0.9642 14 6 10.3753 -1.3464 -2.3286 15 6 11.7934 -0.7843 -2.4465 16 6 12.3685 -1.1500 -3.7905 17 1 11.7816 -1.7261 -4.4904 18 6 13.6446 -0.7499 -4.1263 19 7 14.1464 -1.0686 -5.2994 20 14 14.6602 0.2460 -2.9154 21 1 15.4433 -0.6740 -2.0519 22 1 15.5875 1.1349 -3.6606 23 1 13.7572 1.0688 -2.0712 24 6 5.7006 -2.1410 -0.4294 25 6 4.3235 -2.1446 -0.5367 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5137 -0.8901 29 1 1.6989 -2.0055 -0.0781 30 1 3.6361 0.5610 1.3745 31 1 6.0897 0.5517 1.5675 32 1 7.9224 -3.2018 1.1807 33 1 9.3504 -2.2153 1.5767 34 1 7.8233 -1.9634 2.4554 35 1 7.8480 -1.1912 -1.6088 36 1 10.4155 -1.3943 -0.1754 37 1 9.7608 0.1105 -0.8650 38 1 10.4057 -2.4315 -2.4273 39 1 9.7511 -0.9271 -3.1175 40 1 11.7635 0.3009 -2.3475 41 1 12.4174 -1.2040 -1.6575 42 1 15.0443 -0.7875 -5.5354 43 1 6.2830 -2.8960 -0.9364 44 1 3.8293 -2.9018 -1.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182058426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:06 Heat of formation + Delta-G solvation = -26.206931 kcal Electronic energy + Delta-G solvation = -21888.471929 eV Core-core repulsion = 18611.898212 eV Total energy + Delta-G solvation = -3276.573716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82902 -39.16493 -36.92414 -35.08891 -33.76019 -32.12617 -31.12394 -30.87549 -29.70573 -28.12650 -26.29392 -23.76329 -23.12992 -21.90462 -21.17003 -20.30758 -19.90086 -18.13236 -17.30050 -16.76820 -16.23773 -15.90930 -15.52269 -14.79562 -14.71209 -14.30333 -14.08611 -13.89729 -13.76720 -13.51720 -13.28401 -13.10543 -12.81962 -12.66168 -12.45096 -12.41141 -11.92055 -11.78976 -11.50343 -11.37012 -10.95579 -10.89628 -10.69248 -10.57686 -10.18368 -9.90584 -9.68622 -9.54108 -9.13157 -9.06265 -8.49705 -8.25679 -8.22860 -6.00160 -3.97624 1.02642 1.28096 2.19618 2.68034 3.33606 3.40680 3.44814 3.62365 4.24596 4.32288 4.48913 4.65414 4.68328 4.76810 4.82340 4.87737 5.19122 5.26175 5.30612 5.33793 5.36160 5.42775 5.47997 5.68669 5.76382 5.83103 5.85992 5.96121 6.10223 6.11320 6.19772 6.29238 6.30336 6.46874 6.60612 6.65998 6.84620 6.96698 6.98120 7.27063 7.39310 7.48537 7.61409 7.69348 7.84720 8.59344 9.05547 9.62588 11.13398 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.002374 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.406955 B =11793.073572 C =12063.881587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.524 6.524 4 N -0.675 5.675 5 C 0.137 3.863 6 C -0.122 4.122 7 C -0.095 4.095 8 C -0.098 4.098 9 C 0.122 3.878 10 H 0.049 0.951 11 C -0.133 4.133 12 N -0.684 5.684 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.080 4.080 25 C -0.146 4.146 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.341 0.659 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.138 0.862 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.169 -2.041 15.602 32.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.399 6.399 4 N -0.321 5.321 5 C 0.043 3.957 6 C -0.142 4.142 7 C -0.115 4.115 8 C -0.099 4.099 9 C 0.013 3.987 10 H 0.067 0.933 11 C -0.191 4.191 12 N -0.315 5.315 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.098 4.098 25 C -0.166 4.166 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.246 0.754 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.156 0.844 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.434 -1.850 15.708 31.667 hybrid contribution 0.192 1.031 0.299 1.090 sum -27.242 -0.820 16.006 31.607 Atomic orbital electron populations 1.21930 0.90724 1.06043 1.04557 1.21032 0.90912 0.83206 0.75286 1.90771 1.70594 1.31232 1.47334 1.43606 1.05469 1.09839 1.73163 1.17746 0.82434 0.97807 0.97680 1.21024 0.94643 0.99380 0.99134 1.20938 0.93223 0.98007 0.99287 1.20020 0.95465 0.95743 0.98687 1.20430 0.88856 0.97794 0.91665 0.93302 1.21767 1.01407 0.99164 0.96785 1.60681 1.04107 1.63921 1.02817 1.22205 0.88561 0.96286 1.00177 1.21436 0.97648 1.01302 0.93308 1.19544 0.92249 0.95842 0.97474 1.21156 0.99886 1.34634 0.99888 0.91033 1.25054 0.97722 0.95765 0.95146 1.69924 1.16607 1.46958 1.20931 0.86759 0.80224 0.80643 0.81530 1.20313 1.21457 1.19094 1.20924 0.93187 0.98256 0.97464 1.20903 0.94247 1.00345 1.01119 0.89034 0.88553 0.89065 0.75384 0.85130 0.85866 0.91883 0.92246 0.92903 0.84049 0.91404 0.95746 0.91949 0.93055 0.96876 0.97060 0.92815 0.84425 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.32 36.01 0.37 -0.24 16 2 C 0.51 4.20 7.68 -10.98 -0.08 4.11 16 3 O -0.52 -6.87 14.77 5.55 0.08 -6.78 16 4 N -0.68 -4.80 5.34 -9.86 -0.05 -4.85 16 5 C 0.14 1.38 6.28 -83.70 -0.53 0.85 16 6 C -0.12 -1.40 8.66 -39.39 -0.34 -1.74 16 7 C -0.10 -1.08 9.66 -39.61 -0.38 -1.46 16 8 C -0.10 -1.13 4.72 -104.59 -0.49 -1.62 16 9 C 0.12 1.50 2.82 -68.86 -0.19 1.30 16 10 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 11 C -0.13 -1.51 9.39 37.16 0.35 -1.16 16 12 N -0.68 -9.66 5.68 -107.95 -0.61 -10.27 16 13 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 14 C -0.10 -2.00 5.41 -26.73 -0.14 -2.14 16 15 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 16 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -28.46 13.96 55.43 0.77 -27.69 16 20 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 C -0.08 -0.85 8.99 -39.61 -0.36 -1.21 16 25 C -0.15 -1.38 9.96 -39.39 -0.39 -1.77 16 26 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.10 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.41 1.40 8.82 -40.82 -0.36 1.04 16 30 H 0.13 1.57 6.41 -52.48 -0.34 1.23 16 31 H 0.12 1.24 8.03 -52.49 -0.42 0.82 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.34 4.77 7.98 -39.29 -0.31 4.45 16 36 H 0.07 1.11 7.44 -51.93 -0.39 0.73 16 37 H 0.02 0.40 8.05 -51.93 -0.42 -0.01 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.14 1.46 7.70 -52.49 -0.40 1.06 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -34.64 362.17 -8.94 -43.58 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.16 Total: 1.28 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.76 Total: -18.26 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.11 Total: -42.81 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.08 Total: -6.78 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.64 -8.94 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182058426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.369 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds