Wall clock time and date at job start Tue Mar 31 2020 07:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21289 * 120.00394 * 2 1 4 4 N 1.34781 * 119.99893 * 180.02562 * 2 1 3 5 5 C 1.39919 * 120.00269 * 185.27474 * 4 2 1 6 6 C 1.38874 * 120.06942 * 33.28575 * 5 4 2 7 7 C 1.38112 * 119.93098 * 180.02562 * 6 5 4 8 8 C 1.38285 * 120.07014 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.93127 * 179.97438 * 8 7 6 10 10 H 1.08992 * 109.46975 * 339.99311 * 9 8 7 11 11 C 1.52996 * 109.47437 * 99.99654 * 9 8 7 12 12 N 1.46907 * 109.47039 * 219.99748 * 9 8 7 13 13 C 1.46896 * 110.99838 * 154.99616 * 12 9 8 14 14 C 1.53006 * 109.46799 * 179.97438 * 13 12 9 15 15 C 1.52996 * 109.46986 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47019 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00165 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00037 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00260 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00028 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46957 * 90.00072 * 20 18 16 22 22 H 1.48499 * 109.47305 * 210.00124 * 20 18 16 23 23 H 1.48494 * 109.46945 * 330.00476 * 20 18 16 24 24 C 1.38286 * 120.14028 * 0.25280 * 8 7 6 25 25 C 1.38119 * 120.06900 * 359.49246 * 24 8 7 26 26 H 1.08993 * 109.46803 * 239.99564 * 1 2 3 27 27 H 1.08998 * 109.46848 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47047 * 119.99113 * 1 2 3 29 29 H 0.97003 * 119.99930 * 5.27006 * 4 2 1 30 30 H 1.08004 * 120.03470 * 359.97438 * 6 5 4 31 31 H 1.07999 * 119.97046 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47172 * 59.99548 * 11 9 8 33 33 H 1.09001 * 109.47035 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47132 * 299.99813 * 11 9 8 35 35 H 1.00895 * 110.99586 * 31.04263 * 12 9 8 36 36 H 1.09003 * 109.47129 * 60.00362 * 13 12 9 37 37 H 1.08997 * 109.47214 * 300.00020 * 13 12 9 38 38 H 1.08997 * 109.47369 * 300.00066 * 14 13 12 39 39 H 1.08994 * 109.46962 * 60.00096 * 14 13 12 40 40 H 1.09002 * 109.47475 * 300.00286 * 15 14 13 41 41 H 1.09003 * 109.47123 * 60.00392 * 15 14 13 42 42 H 0.96998 * 119.99750 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.96466 * 179.74695 * 24 8 7 44 44 H 1.07997 * 120.03639 * 180.25365 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5757 -1.1700 0.1109 6 6 4.2150 -0.1983 0.8697 7 6 5.5919 -0.2034 0.9772 8 6 6.3338 -1.1749 0.3308 9 6 7.8361 -1.1771 0.4498 10 1 8.1774 -0.1895 0.7595 11 6 8.2638 -2.2140 1.4904 12 7 8.4299 -1.5149 -0.8508 13 6 9.7911 -0.9746 -0.9642 14 6 10.3753 -1.3464 -2.3286 15 6 11.7934 -0.7843 -2.4465 16 6 12.3685 -1.1500 -3.7905 17 1 11.7816 -1.7261 -4.4904 18 6 13.6446 -0.7499 -4.1263 19 7 14.1464 -1.0686 -5.2994 20 14 14.6602 0.2460 -2.9154 21 1 15.4433 -0.6740 -2.0519 22 1 15.5875 1.1349 -3.6606 23 1 13.7572 1.0688 -2.0712 24 6 5.7006 -2.1410 -0.4294 25 6 4.3235 -2.1446 -0.5367 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5137 -0.8901 29 1 1.6989 -2.0055 -0.0781 30 1 3.6361 0.5610 1.3745 31 1 6.0897 0.5517 1.5675 32 1 7.9224 -3.2018 1.1807 33 1 9.3504 -2.2153 1.5767 34 1 7.8233 -1.9634 2.4554 35 1 7.8480 -1.1912 -1.6088 36 1 10.4155 -1.3943 -0.1754 37 1 9.7608 0.1105 -0.8650 38 1 10.4057 -2.4315 -2.4273 39 1 9.7511 -0.9271 -3.1175 40 1 11.7635 0.3009 -2.3475 41 1 12.4174 -1.2040 -1.6575 42 1 15.0443 -0.7875 -5.5354 43 1 6.2830 -2.8960 -0.9364 44 1 3.8293 -2.9018 -1.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182058426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:05 Heat of formation + Delta-G solvation = -49.550535 kcal Electronic energy + Delta-G solvation = -21889.484183 eV Core-core repulsion = 18611.898212 eV Total energy + Delta-G solvation = -3277.585971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.54778 -39.99577 -38.00553 -36.20415 -35.28550 -33.86738 -31.97255 -31.78403 -30.77622 -28.85185 -27.99825 -24.74523 -24.24891 -23.18535 -22.03530 -21.72928 -20.99045 -18.92483 -18.81799 -17.94268 -17.32009 -16.73169 -16.47061 -16.34789 -15.83419 -15.47938 -15.08814 -15.02058 -14.82659 -14.67913 -14.32788 -14.07463 -13.95938 -13.65149 -13.48604 -13.27829 -13.08897 -13.00142 -12.74464 -12.51594 -12.49179 -12.29014 -11.88235 -11.74385 -11.51084 -11.43129 -11.34963 -11.20045 -10.92177 -10.75967 -9.88086 -9.38208 -9.03356 -8.29122 -6.33191 0.22491 0.45510 1.35787 1.37907 1.50068 1.56679 2.12075 2.36560 2.80791 3.05910 3.20481 3.73836 3.76841 3.98862 4.06666 4.24205 4.26578 4.34787 4.46068 4.49075 4.57354 4.62376 4.64874 4.66604 4.68092 4.81046 4.92592 4.97047 5.03626 5.07379 5.12870 5.14599 5.28757 5.34807 5.39341 5.51047 5.51975 5.62012 5.64725 5.67671 6.04416 6.14948 6.30310 6.43761 6.45837 6.75033 7.12785 7.31164 8.87789 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.002374 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.406955 B =11793.073572 C =12063.881587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.501 3.499 3 O -0.580 6.580 4 N -0.663 5.663 5 C 0.133 3.867 6 C -0.138 4.138 7 C -0.102 4.102 8 C -0.107 4.107 9 C 0.125 3.875 10 H 0.048 0.952 11 C -0.129 4.129 12 N -0.683 5.683 13 C 0.070 3.930 14 C -0.090 4.090 15 C -0.011 4.011 16 C -0.533 4.533 17 H 0.030 0.970 18 C 0.000 4.000 19 N -0.952 5.952 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.247 1.247 24 C -0.085 4.085 25 C -0.142 4.142 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.430 0.570 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.342 0.658 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.266 0.734 43 H 0.139 0.861 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.589 -2.153 17.460 34.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.292 3.708 3 O -0.459 6.459 4 N -0.310 5.310 5 C 0.038 3.962 6 C -0.158 4.158 7 C -0.122 4.122 8 C -0.108 4.108 9 C 0.016 3.984 10 H 0.066 0.934 11 C -0.187 4.187 12 N -0.315 5.315 13 C -0.059 4.059 14 C -0.128 4.128 15 C -0.049 4.049 16 C -0.571 4.571 17 H 0.048 0.952 18 C -0.197 4.197 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.171 1.171 24 C -0.104 4.104 25 C -0.162 4.162 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.269 0.731 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.156 0.844 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.905 -2.011 17.578 33.890 hybrid contribution 0.531 0.989 -0.362 1.180 sum -28.374 -1.022 17.216 33.205 Atomic orbital electron populations 1.21954 0.86745 1.06493 1.06976 1.21955 0.92755 0.82435 0.73677 1.90751 1.72001 1.33191 1.49988 1.43591 1.04418 1.10756 1.72198 1.17908 0.83962 0.97306 0.97002 1.21064 0.94825 0.99876 1.00042 1.21028 0.93329 0.98232 0.99566 1.19948 0.94935 0.96354 0.99565 1.20436 0.89350 0.98007 0.90654 0.93423 1.21739 1.01062 0.98751 0.97175 1.60636 1.03165 1.63758 1.03907 1.21941 0.89837 0.96495 0.97670 1.21253 0.95578 1.00323 0.95622 1.19495 0.94446 0.96182 0.94736 1.21519 0.99988 1.34085 1.01478 0.95192 1.26089 0.99210 0.97122 0.97259 1.70082 1.17348 1.48605 1.23296 0.85595 0.78495 0.79149 0.79010 1.18960 1.20981 1.17063 1.21030 0.93923 0.98097 0.97365 1.21143 0.93805 1.00529 1.00700 0.86413 0.89161 0.86524 0.73060 0.86259 0.85258 0.92056 0.92794 0.91473 0.83994 0.90820 0.95451 0.92944 0.93744 0.96423 0.96131 0.92522 0.84355 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 10.32 71.24 0.74 -0.01 16 2 C 0.50 7.69 7.68 87.66 0.67 8.36 16 3 O -0.58 -15.36 14.77 -3.06 -0.05 -15.41 16 4 N -0.66 -8.18 5.34 -303.50 -1.62 -9.80 16 5 C 0.13 2.51 6.28 38.15 0.24 2.75 16 6 C -0.14 -3.14 8.66 22.39 0.19 -2.95 16 7 C -0.10 -2.27 9.66 22.25 0.21 -2.06 16 8 C -0.11 -2.35 4.72 -19.84 -0.09 -2.45 16 9 C 0.12 2.89 2.82 44.17 0.12 3.02 16 10 H 0.05 1.13 7.66 -2.39 -0.02 1.11 16 11 C -0.13 -2.72 9.39 71.98 0.68 -2.04 16 12 N -0.68 -18.50 5.68 -495.45 -2.82 -21.32 16 13 C 0.07 2.20 5.48 86.31 0.47 2.67 16 14 C -0.09 -3.60 5.41 30.60 0.17 -3.43 16 15 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 16 C -0.53 -31.76 9.66 25.60 0.25 -31.51 16 17 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 18 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 19 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 20 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.25 -10.89 6.54 99.48 0.65 -10.23 16 24 C -0.09 -1.72 8.99 22.25 0.20 -1.52 16 25 C -0.14 -2.42 9.96 22.39 0.22 -2.20 16 26 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.09 0.58 8.12 -2.39 -0.02 0.56 16 28 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.43 1.69 8.82 -92.71 -0.82 0.87 16 30 H 0.12 2.97 6.41 -2.91 -0.02 2.95 16 31 H 0.13 2.57 8.03 -2.91 -0.02 2.55 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.18 7.45 -2.39 -0.02 1.17 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.34 9.25 7.98 -89.70 -0.72 8.53 16 36 H 0.07 2.27 7.44 -2.39 -0.02 2.25 16 37 H 0.03 0.86 8.05 -2.39 -0.02 0.84 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 41 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 42 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 43 H 0.14 2.75 7.70 -2.91 -0.02 2.73 16 44 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -77.00 362.17 1.76 -75.24 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.59 Total: 16.33 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.66 Total: -31.32 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -4.14 Total: -92.02 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.05 Total: -15.41 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -77.00 1.76 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182058426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.690 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds