Wall clock time and date at job start Tue Mar 31 2020 08:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47004 * 2 1 4 4 C 1.52999 * 109.46964 * 239.99870 * 2 1 3 5 5 C 1.52997 * 109.46940 * 63.08506 * 4 2 1 6 6 N 1.46503 * 109.47067 * 174.88188 * 5 4 2 7 7 C 1.34781 * 119.99935 * 180.02562 * 6 5 4 8 8 O 1.21686 * 120.00102 * 0.02562 * 7 6 5 9 9 C 1.46376 * 119.99728 * 179.97438 * 7 6 5 10 10 H 1.08003 * 120.00376 * 359.97438 * 9 7 6 11 11 C 1.40046 * 119.99680 * 179.97438 * 9 7 6 12 12 N 1.30669 * 120.00139 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99861 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47009 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47181 * 120.00074 * 13 11 9 16 16 H 1.48504 * 109.46752 * 239.99730 * 13 11 9 17 17 N 1.46897 * 109.46933 * 120.00372 * 2 1 3 18 18 C 1.46899 * 110.99875 * 175.92625 * 17 2 1 19 19 C 1.46908 * 111.00083 * 299.87408 * 17 2 1 20 20 C 1.50698 * 109.47027 * 170.00189 * 19 17 2 21 21 C 1.38234 * 120.00154 * 269.72634 * 20 19 17 22 22 C 1.38234 * 119.99819 * 179.77332 * 21 20 19 23 23 C 1.38237 * 119.99886 * 0.50208 * 22 21 20 24 24 C 1.38235 * 119.99996 * 359.75174 * 23 22 21 25 25 C 1.38228 * 120.00151 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47163 * 60.00125 * 1 2 3 27 27 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47174 * 299.99830 * 1 2 3 29 29 H 1.08999 * 109.47238 * 183.08795 * 4 2 1 30 30 H 1.08999 * 109.47485 * 303.08584 * 4 2 1 31 31 H 1.08999 * 109.47379 * 294.87962 * 5 4 2 32 32 H 1.09005 * 109.47612 * 54.88402 * 5 4 2 33 33 H 0.97002 * 120.00360 * 359.97438 * 6 5 4 34 34 H 0.97006 * 119.99710 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.47114 * 178.40626 * 18 17 2 36 36 H 1.09002 * 109.46970 * 298.39695 * 18 17 2 37 37 H 1.08996 * 109.47386 * 58.40259 * 18 17 2 38 38 H 1.08998 * 109.46973 * 290.00762 * 19 17 2 39 39 H 1.08998 * 109.46853 * 50.00203 * 19 17 2 40 40 H 1.08006 * 119.99801 * 0.02562 * 21 20 19 41 41 H 1.08004 * 119.99757 * 180.23545 * 22 21 20 42 42 H 1.08001 * 119.99371 * 179.73119 * 23 22 21 43 43 H 1.08003 * 119.99631 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00266 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5943 0.0434 -2.4972 6 7 2.1837 -0.5769 -3.6864 7 6 1.9285 -0.0684 -4.9083 8 8 1.2091 0.9062 -5.0236 9 6 2.5179 -0.6879 -6.0964 10 1 3.1575 -1.5521 -5.9939 11 6 2.2523 -0.1598 -7.3660 12 7 1.4781 0.8855 -7.4901 13 14 3.0038 -0.9508 -8.8823 14 1 3.8351 -2.1117 -8.4746 15 1 1.9212 -1.4105 -9.7889 16 1 3.8530 0.0417 -9.5889 17 7 2.0196 -0.6926 1.1994 18 6 3.4848 -0.7971 1.1856 19 6 1.5510 -0.0248 2.4211 20 6 1.8600 -0.8893 3.6162 21 6 0.9359 -1.8196 4.0537 22 6 1.2213 -2.6158 5.1471 23 6 2.4266 -2.4745 5.8092 24 6 3.3485 -1.5406 5.3748 25 6 3.0655 -0.7483 4.2780 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1285 -0.7695 -1.2220 30 1 1.6322 -1.7317 -1.2773 31 1 0.5073 0.0136 -2.5728 32 1 1.9253 1.0795 -2.4261 33 1 2.7581 -1.3531 -3.5944 34 1 1.2945 1.2514 -8.3695 35 1 3.8226 -1.2887 2.0980 36 1 3.7993 -1.3811 0.3206 37 1 3.9198 0.2006 1.1280 38 1 2.0560 0.9354 2.5268 39 1 0.4748 0.1359 2.3574 40 1 -0.0074 -1.9271 3.5389 41 1 0.5009 -3.3452 5.4867 42 1 2.6477 -3.0936 6.6661 43 1 4.2900 -1.4299 5.8923 44 1 3.7855 -0.0183 3.9389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187599403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:26 Heat of formation + Delta-G solvation = -16.080022 kcal Electronic energy + Delta-G solvation = -22276.631641 eV Core-core repulsion = 19000.497061 eV Total energy + Delta-G solvation = -3276.134581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.83 seconds Orbital eigenvalues (eV) -39.81233 -38.26404 -37.08556 -34.29624 -32.60598 -32.03165 -31.19903 -30.71258 -28.76813 -26.91311 -25.81946 -24.55254 -22.75814 -22.68580 -21.06221 -19.87971 -19.55636 -17.16222 -16.96007 -16.17708 -15.58733 -15.45171 -15.27483 -15.08881 -14.64374 -14.16002 -14.03141 -13.77977 -13.63405 -13.29354 -12.90403 -12.77429 -12.44687 -12.31484 -12.11407 -11.99721 -11.63886 -11.33769 -11.26633 -11.13832 -11.09915 -11.00148 -10.80527 -10.63422 -10.40268 -10.30138 -10.16426 -9.11454 -8.98805 -8.83443 -8.37754 -7.57954 -7.44558 -6.15944 -4.60969 1.11765 1.19776 3.14537 3.22538 3.27213 3.46193 3.98257 4.13707 4.55122 4.62112 4.62304 4.75877 4.78974 4.89390 5.00912 5.08413 5.17622 5.26920 5.30199 5.40252 5.43011 5.51278 5.58203 5.64885 5.75812 5.79174 5.83396 5.86049 5.90650 5.92188 6.04002 6.14909 6.23534 6.29538 6.31319 6.42687 6.64640 6.66257 6.78130 6.97867 7.03147 7.46157 7.97455 8.15172 8.36935 9.05420 9.58298 10.63307 10.82300 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039739 B = 0.002374 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.433871 B =11791.979588 C =12069.978890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.086 3.914 3 H 0.043 0.957 4 C -0.123 4.123 5 C 0.135 3.865 6 N -0.768 5.768 7 C 0.554 3.446 8 O -0.582 6.582 9 C -0.545 4.545 10 H 0.068 0.932 11 C 0.086 3.914 12 N -0.769 5.769 13 Si 0.907 3.093 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.277 1.277 17 N -0.531 5.531 18 C 0.015 3.985 19 C 0.086 3.914 20 C -0.072 4.072 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.379 0.621 34 H 0.267 0.733 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -5.278 24.587 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 H 0.061 0.939 4 C -0.161 4.161 5 C 0.009 3.991 6 N -0.424 5.424 7 C 0.358 3.642 8 O -0.465 6.465 9 C -0.582 4.582 10 H 0.086 0.914 11 C -0.133 4.133 12 N -0.398 5.398 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.202 1.202 17 N -0.255 5.255 18 C -0.133 4.133 19 C -0.041 4.041 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.134 4.134 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.211 0.789 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.311 -4.867 24.360 24.876 hybrid contribution 1.075 0.027 -0.630 1.246 sum 2.386 -4.840 23.730 24.335 Atomic orbital electron populations 1.21982 0.94123 1.02750 1.01883 1.21587 0.95912 0.95530 0.89218 0.93927 1.21879 1.01007 1.00215 0.92962 1.20867 0.97740 0.95967 0.84522 1.46128 1.55271 1.35057 1.05949 1.18227 0.80998 0.83524 0.81490 1.90591 1.41383 1.28832 1.85733 1.20930 1.31903 1.15340 0.90071 0.91420 1.25719 0.93614 0.93964 0.99990 1.70039 1.27853 1.18041 1.23861 0.86326 0.79343 0.79748 0.81378 1.18789 1.20173 1.20203 1.62055 1.10554 1.51905 1.00966 1.22539 0.87388 1.00222 1.03113 1.21154 1.01596 0.93825 0.87564 1.19782 0.94283 0.97247 0.95940 1.21048 0.99477 0.95049 0.96150 1.21161 0.97175 0.99472 0.96182 1.21135 0.94336 0.98689 1.00078 1.21104 0.99426 0.96494 0.97046 1.21080 0.96520 0.99809 0.95952 0.91155 0.91688 0.92938 0.91570 0.90889 0.93160 0.93812 0.78937 0.92217 0.91232 0.90664 0.95714 0.94101 0.89299 0.85940 0.86175 0.86349 0.86278 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.71 37.16 0.32 -1.46 16 2 C 0.09 1.08 2.17 -67.71 -0.15 0.93 16 3 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -1.77 4.55 -26.73 -0.12 -1.89 16 5 C 0.13 2.60 5.25 -4.04 -0.02 2.58 16 6 N -0.77 -17.53 5.55 -61.72 -0.34 -17.87 16 7 C 0.55 16.10 7.75 -12.98 -0.10 16.00 16 8 O -0.58 -19.26 15.02 5.20 0.08 -19.18 16 9 C -0.55 -15.66 9.54 -35.63 -0.34 -16.00 16 10 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 11 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 12 N -0.77 -23.41 11.83 55.55 0.66 -22.76 16 13 Si 0.91 20.36 29.56 -169.99 -5.02 15.34 16 14 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 N -0.53 -6.04 4.62 -236.34 -1.09 -7.13 16 18 C 0.02 0.16 8.75 60.06 0.53 0.69 16 19 C 0.09 0.86 4.94 -4.97 -0.02 0.83 16 20 C -0.07 -0.70 4.89 -104.62 -0.51 -1.22 16 21 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 25 C -0.12 -1.04 7.89 -39.58 -0.31 -1.35 16 26 H 0.07 0.92 6.62 -51.93 -0.34 0.58 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.53 6.20 -51.93 -0.32 0.21 16 29 H 0.07 0.92 6.20 -51.93 -0.32 0.60 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.02 6.77 -51.93 -0.35 0.67 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.38 7.60 8.45 -40.82 -0.35 7.25 16 34 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 35 H 0.07 0.70 5.77 -51.93 -0.30 0.40 16 36 H 0.07 0.83 6.26 -51.93 -0.33 0.51 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 39 H 0.09 0.84 5.77 -51.93 -0.30 0.54 16 40 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 41 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -34.72 354.84 -9.58 -44.30 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.80 Total: 6.04 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.40 Total: -4.08 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.78 Total: -47.76 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.08 Total: -19.18 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.72 -9.58 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187599403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.218 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.83 seconds