Wall clock time and date at job start Tue Mar 31 2020 08:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47004 * 2 1 4 4 C 1.52999 * 109.46964 * 239.99870 * 2 1 3 5 5 C 1.52997 * 109.46940 * 63.08506 * 4 2 1 6 6 N 1.46503 * 109.47067 * 174.88188 * 5 4 2 7 7 C 1.34781 * 119.99935 * 180.02562 * 6 5 4 8 8 O 1.21686 * 120.00102 * 0.02562 * 7 6 5 9 9 C 1.46376 * 119.99728 * 179.97438 * 7 6 5 10 10 H 1.08003 * 120.00376 * 359.97438 * 9 7 6 11 11 C 1.40046 * 119.99680 * 179.97438 * 9 7 6 12 12 N 1.30669 * 120.00139 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99861 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47009 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47181 * 120.00074 * 13 11 9 16 16 H 1.48504 * 109.46752 * 239.99730 * 13 11 9 17 17 N 1.46897 * 109.46933 * 120.00372 * 2 1 3 18 18 C 1.46899 * 110.99875 * 175.92625 * 17 2 1 19 19 C 1.46908 * 111.00083 * 299.87408 * 17 2 1 20 20 C 1.50698 * 109.47027 * 170.00189 * 19 17 2 21 21 C 1.38234 * 120.00154 * 269.72634 * 20 19 17 22 22 C 1.38234 * 119.99819 * 179.77332 * 21 20 19 23 23 C 1.38237 * 119.99886 * 0.50208 * 22 21 20 24 24 C 1.38235 * 119.99996 * 359.75174 * 23 22 21 25 25 C 1.38228 * 120.00151 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47163 * 60.00125 * 1 2 3 27 27 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47174 * 299.99830 * 1 2 3 29 29 H 1.08999 * 109.47238 * 183.08795 * 4 2 1 30 30 H 1.08999 * 109.47485 * 303.08584 * 4 2 1 31 31 H 1.08999 * 109.47379 * 294.87962 * 5 4 2 32 32 H 1.09005 * 109.47612 * 54.88402 * 5 4 2 33 33 H 0.97002 * 120.00360 * 359.97438 * 6 5 4 34 34 H 0.97006 * 119.99710 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.47114 * 178.40626 * 18 17 2 36 36 H 1.09002 * 109.46970 * 298.39695 * 18 17 2 37 37 H 1.08996 * 109.47386 * 58.40259 * 18 17 2 38 38 H 1.08998 * 109.46973 * 290.00762 * 19 17 2 39 39 H 1.08998 * 109.46853 * 50.00203 * 19 17 2 40 40 H 1.08006 * 119.99801 * 0.02562 * 21 20 19 41 41 H 1.08004 * 119.99757 * 180.23545 * 22 21 20 42 42 H 1.08001 * 119.99371 * 179.73119 * 23 22 21 43 43 H 1.08003 * 119.99631 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00266 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5943 0.0434 -2.4972 6 7 2.1837 -0.5769 -3.6864 7 6 1.9285 -0.0684 -4.9083 8 8 1.2091 0.9062 -5.0236 9 6 2.5179 -0.6879 -6.0964 10 1 3.1575 -1.5521 -5.9939 11 6 2.2523 -0.1598 -7.3660 12 7 1.4781 0.8855 -7.4901 13 14 3.0038 -0.9508 -8.8823 14 1 3.8351 -2.1117 -8.4746 15 1 1.9212 -1.4105 -9.7889 16 1 3.8530 0.0417 -9.5889 17 7 2.0196 -0.6926 1.1994 18 6 3.4848 -0.7971 1.1856 19 6 1.5510 -0.0248 2.4211 20 6 1.8600 -0.8893 3.6162 21 6 0.9359 -1.8196 4.0537 22 6 1.2213 -2.6158 5.1471 23 6 2.4266 -2.4745 5.8092 24 6 3.3485 -1.5406 5.3748 25 6 3.0655 -0.7483 4.2780 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1285 -0.7695 -1.2220 30 1 1.6322 -1.7317 -1.2773 31 1 0.5073 0.0136 -2.5728 32 1 1.9253 1.0795 -2.4261 33 1 2.7581 -1.3531 -3.5944 34 1 1.2945 1.2514 -8.3695 35 1 3.8226 -1.2887 2.0980 36 1 3.7993 -1.3811 0.3206 37 1 3.9198 0.2006 1.1280 38 1 2.0560 0.9354 2.5268 39 1 0.4748 0.1359 2.3574 40 1 -0.0074 -1.9271 3.5389 41 1 0.5009 -3.3452 5.4867 42 1 2.6477 -3.0936 6.6661 43 1 4.2900 -1.4299 5.8923 44 1 3.7855 -0.0183 3.9389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187599403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:25 Heat of formation + Delta-G solvation = -39.691051 kcal Electronic energy + Delta-G solvation = -22277.655492 eV Core-core repulsion = 19000.497061 eV Total energy + Delta-G solvation = -3277.158432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56790 -39.58598 -38.76226 -35.84633 -34.58749 -33.53379 -31.90530 -31.59538 -30.09099 -28.44717 -27.24442 -25.56655 -24.01042 -23.36395 -21.87003 -21.72891 -20.86043 -19.13876 -17.67922 -17.42591 -17.23229 -16.45139 -16.28425 -16.16621 -15.89741 -15.78880 -15.39933 -15.02855 -14.55773 -14.31505 -14.20208 -13.93410 -13.55983 -13.50226 -13.38321 -13.11262 -12.87903 -12.80438 -12.67957 -12.57290 -12.51076 -12.25683 -11.97423 -11.93398 -11.73782 -11.68502 -11.49067 -10.94805 -9.87973 -9.75777 -9.67009 -9.47688 -9.25836 -8.29537 -6.85881 0.46092 0.55708 1.40535 1.40716 1.59015 2.24904 2.46869 2.68644 3.07998 3.26498 3.61550 3.82452 3.90513 3.97343 4.04032 4.17850 4.20888 4.30227 4.38071 4.42015 4.43389 4.50640 4.64176 4.65133 4.68305 4.75962 4.82968 4.91381 4.98569 5.03222 5.13451 5.16605 5.21393 5.23345 5.32158 5.37510 5.60939 5.67387 5.74767 5.87853 6.05706 6.09718 6.18068 6.24646 6.28807 6.86525 7.55502 8.49042 8.67329 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039739 B = 0.002374 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.433871 B =11791.979588 C =12069.978890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 H 0.037 0.963 4 C -0.105 4.105 5 C 0.138 3.862 6 N -0.756 5.756 7 C 0.535 3.465 8 O -0.634 6.634 9 C -0.573 4.573 10 H 0.088 0.912 11 C 0.026 3.974 12 N -0.823 5.823 13 Si 1.000 3.000 14 H -0.246 1.246 15 H -0.268 1.268 16 H -0.268 1.268 17 N -0.533 5.533 18 C 0.016 3.984 19 C 0.088 3.912 20 C -0.086 4.086 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.125 4.125 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -7.088 25.425 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 H 0.055 0.945 4 C -0.143 4.143 5 C 0.013 3.987 6 N -0.411 5.411 7 C 0.339 3.661 8 O -0.522 6.522 9 C -0.609 4.609 10 H 0.106 0.894 11 C -0.189 4.189 12 N -0.453 5.453 13 Si 0.820 3.180 14 H -0.169 1.169 15 H -0.193 1.193 16 H -0.193 1.193 17 N -0.257 5.257 18 C -0.132 4.132 19 C -0.039 4.039 20 C -0.086 4.086 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.658 -6.715 25.261 26.273 hybrid contribution 0.654 0.590 -0.765 1.167 sum 3.312 -6.125 24.496 25.466 Atomic orbital electron populations 1.21935 0.93711 1.02808 1.01941 1.21450 0.96229 0.95007 0.89075 0.94507 1.21703 1.01539 0.99689 0.91340 1.20938 0.96771 0.95681 0.85281 1.45828 1.54749 1.35051 1.05473 1.18659 0.80683 0.83198 0.83538 1.90544 1.43645 1.31071 1.86953 1.21472 1.32472 1.16191 0.90785 0.89371 1.27025 0.93589 0.94199 1.04094 1.70204 1.29576 1.20067 1.25431 0.84937 0.78486 0.78960 0.75665 1.16918 1.19311 1.19333 1.62039 1.11002 1.51814 1.00861 1.22549 0.86975 1.00341 1.03347 1.21157 1.01752 0.93897 0.87065 1.19808 0.94929 0.97742 0.96135 1.21210 0.99713 0.95415 0.96791 1.21431 0.97834 0.99587 0.95876 1.21461 0.94028 0.98672 1.00520 1.21394 1.00294 0.96165 0.96819 1.21234 0.96470 1.00243 0.96355 0.92923 0.91600 0.91078 0.90597 0.90384 0.94535 0.95535 0.77113 0.91566 0.90480 0.90996 0.95558 0.93959 0.88968 0.85663 0.84517 0.84275 0.84441 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.71 71.98 0.63 -2.82 16 2 C 0.09 2.23 2.17 44.92 0.10 2.33 16 3 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.10 -2.96 4.55 30.59 0.14 -2.82 16 5 C 0.14 5.46 5.25 86.38 0.45 5.91 16 6 N -0.76 -34.91 5.55 -467.39 -2.59 -37.50 16 7 C 0.54 31.88 7.75 86.36 0.67 32.55 16 8 O -0.63 -43.70 15.02 -4.30 -0.06 -43.76 16 9 C -0.57 -33.01 9.54 24.83 0.24 -32.77 16 10 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 11 C 0.03 1.45 5.50 85.30 0.47 1.92 16 12 N -0.82 -51.24 11.83 21.83 0.26 -50.99 16 13 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 14 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 15 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 N -0.53 -11.49 4.62 -901.63 -4.17 -15.66 16 18 C 0.02 0.32 8.75 127.69 1.12 1.43 16 19 C 0.09 1.66 4.94 85.55 0.42 2.09 16 20 C -0.09 -1.57 4.89 -19.87 -0.10 -1.67 16 21 C -0.11 -1.98 9.70 22.27 0.22 -1.76 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 24 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 25 C -0.12 -2.07 7.89 22.27 0.18 -1.89 16 26 H 0.05 1.42 6.62 -2.39 -0.02 1.40 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.39 6.20 -2.39 -0.01 1.37 16 29 H 0.08 2.02 6.20 -2.39 -0.01 2.00 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.55 6.77 -2.39 -0.02 1.53 16 32 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.40 15.61 8.45 -92.71 -0.78 14.82 16 34 H 0.27 15.38 8.29 -92.70 -0.77 14.61 16 35 H 0.08 1.44 5.77 -2.39 -0.01 1.43 16 36 H 0.07 1.48 6.26 -2.39 -0.01 1.46 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.04 0.78 8.06 -2.39 -0.02 0.76 16 39 H 0.09 1.64 5.77 -2.39 -0.01 1.63 16 40 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 44 H 0.12 1.82 7.95 -2.91 -0.02 1.80 16 Total: -1.00 -76.74 354.84 0.87 -75.87 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.21 Total: 31.10 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.20 Total: -2.45 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -6.50 Total: -104.15 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.06 Total: -43.76 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -76.74 0.87 -75.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187599403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.182 kcal (2) G-P(sol) polarization free energy of solvation -76.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds