Wall clock time and date at job start Tue Mar 31 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.26912 * 2 1 4 4 C 1.54944 * 110.30909 * 122.09447 * 2 1 3 5 5 C 1.55304 * 100.94124 * 155.36350 * 4 2 1 6 6 C 1.54391 * 102.25040 * 325.86300 * 5 4 2 7 7 H 1.08997 * 109.82734 * 261.75365 * 6 5 4 8 8 C 1.52997 * 109.82949 * 140.87324 * 6 5 4 9 9 N 1.46895 * 109.47074 * 180.18493 * 8 6 5 10 10 C 1.46897 * 111.00364 * 293.95287 * 9 8 6 11 11 C 1.50701 * 109.47192 * 299.43158 * 10 9 8 12 12 H 1.08003 * 119.99696 * 354.77659 * 11 10 9 13 13 C 1.37873 * 119.99841 * 174.77647 * 11 10 9 14 14 N 1.31515 * 120.00384 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99777 * 179.72345 * 13 11 10 16 16 H 1.48504 * 109.46836 * 90.00059 * 15 13 11 17 17 H 1.48494 * 109.47223 * 210.00235 * 15 13 11 18 18 H 1.48500 * 109.47039 * 330.00658 * 15 13 11 19 19 C 1.46906 * 111.00117 * 169.99652 * 9 8 6 20 20 C 1.50693 * 109.47423 * 199.60288 * 19 9 8 21 21 C 1.38227 * 119.61582 * 94.63973 * 20 19 9 22 22 C 1.38629 * 119.16610 * 179.97438 * 21 20 19 23 23 C 1.38677 * 118.41657 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.16390 * 359.97438 * 23 22 21 25 25 N 1.31857 * 119.62233 * 274.36640 * 20 19 9 26 26 O 1.43232 * 107.66309 * 21.31633 * 6 5 4 27 27 H 1.08998 * 109.46807 * 297.90874 * 1 2 3 28 28 H 1.09001 * 109.47035 * 57.90978 * 1 2 3 29 29 H 1.09003 * 109.46902 * 177.90675 * 1 2 3 30 30 H 1.08997 * 111.12910 * 37.44303 * 4 2 1 31 31 H 1.09006 * 111.15792 * 273.29160 * 4 2 1 32 32 H 1.08997 * 110.84751 * 207.68040 * 5 4 2 33 33 H 1.08999 * 110.85212 * 84.05447 * 5 4 2 34 34 H 1.09002 * 109.46994 * 60.18419 * 8 6 5 35 35 H 1.09004 * 109.47410 * 300.18612 * 8 6 5 36 36 H 1.08997 * 109.47142 * 179.43005 * 10 9 8 37 37 H 1.09002 * 109.46674 * 59.43149 * 10 9 8 38 38 H 0.97000 * 119.99962 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.47030 * 319.60653 * 19 9 8 40 40 H 1.09002 * 109.46545 * 79.60306 * 19 9 8 41 41 H 1.08008 * 120.42366 * 359.95777 * 21 20 19 42 42 H 1.07997 * 120.79305 * 179.97438 * 22 21 20 43 43 H 1.07993 * 120.42184 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.62014 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0679 -0.7721 1.2310 5 6 3.4700 -1.2018 0.7200 6 6 3.2113 -1.4426 -0.7829 7 1 3.0641 -2.5068 -0.9669 8 6 4.3991 -0.9338 -1.6021 9 7 4.1429 -1.1626 -3.0303 10 6 4.0988 -2.5992 -3.3338 11 6 5.4239 -3.2270 -2.9858 12 1 6.2461 -2.6072 -2.6597 13 6 5.5866 -4.5926 -3.0837 14 7 4.5856 -5.3474 -3.4812 15 14 7.2315 -5.3700 -2.6597 16 1 7.2561 -5.7203 -1.2168 17 1 7.4218 -6.5992 -3.4709 18 1 8.3240 -4.4083 -2.9542 19 6 5.1438 -0.4796 -3.8608 20 6 4.6101 -0.3196 -5.2610 21 6 3.9780 0.8558 -5.6210 22 6 3.4911 0.9931 -6.9117 23 6 3.6595 -0.0615 -7.7963 24 6 4.3028 -1.2059 -7.3651 25 7 4.7563 -1.3003 -6.1302 26 8 2.0282 -0.7192 -1.1416 27 1 -0.3633 0.4810 0.9081 28 1 -0.3633 0.5460 -0.8707 29 1 -0.3633 -1.0270 -0.0375 30 1 1.4472 -1.6404 1.4521 31 1 2.1497 -0.1191 2.1000 32 1 3.7967 -2.1195 1.2091 33 1 4.1975 -0.4033 0.8653 34 1 5.3012 -1.4684 -1.3046 35 1 4.5335 0.1330 -1.4234 36 1 3.8977 -2.7403 -4.3957 37 1 3.3088 -3.0701 -2.7487 38 1 4.7003 -6.3081 -3.5504 39 1 5.3569 0.5025 -3.4388 40 1 6.0592 -1.0706 -3.8862 41 1 3.8645 1.6570 -4.9057 42 1 2.9926 1.8998 -7.2209 43 1 3.2925 0.0105 -8.8093 44 1 4.4376 -2.0319 -8.0477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188556279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:08 Heat of formation + Delta-G solvation = -6.554694 kcal Electronic energy + Delta-G solvation = -23776.585150 eV Core-core repulsion = 20500.863618 eV Total energy + Delta-G solvation = -3275.721531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.69914 -39.18098 -36.42476 -32.44021 -32.22582 -31.86125 -31.72043 -30.70118 -27.52159 -27.00454 -24.78851 -23.46676 -22.93482 -21.98013 -21.04859 -20.47928 -19.31229 -16.73821 -16.40170 -16.10766 -15.67059 -15.55971 -14.97143 -14.65787 -14.47759 -13.96833 -13.69464 -13.36714 -13.10322 -12.87874 -12.75886 -12.52184 -12.34533 -12.22210 -11.82656 -11.40175 -11.25846 -11.18890 -10.92826 -10.80178 -10.74767 -10.52531 -10.48405 -10.34247 -10.12007 -9.93799 -9.49602 -9.36276 -8.88563 -8.72281 -8.49623 -8.25951 -7.03053 -5.88980 -3.95810 1.60515 1.77795 3.32881 3.40434 3.43166 4.17993 4.30751 4.50183 4.81701 4.87199 4.97954 5.06450 5.16841 5.25717 5.36064 5.41921 5.44518 5.49239 5.59770 5.60918 5.67964 5.77345 5.85131 5.92735 5.97596 6.07979 6.09603 6.14896 6.18366 6.23897 6.25214 6.37734 6.48514 6.58341 6.61421 6.78762 6.85037 7.18771 7.40287 7.66820 7.72443 8.07960 8.16958 8.40890 8.43689 8.67657 9.12602 9.68196 11.16341 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.007171 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.379204 B = 3903.531119 C = 6348.354992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.061 0.939 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.090 3.910 7 H 0.090 0.910 8 C 0.057 3.943 9 N -0.525 5.525 10 C 0.185 3.815 11 C -0.537 4.537 12 H 0.053 0.947 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.883 3.117 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.100 3.900 20 C 0.162 3.838 21 C -0.163 4.163 22 C -0.084 4.084 23 C -0.191 4.191 24 C 0.098 3.902 25 N -0.454 5.454 26 O -0.355 6.355 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.259 0.741 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 12.941 2.591 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 H 0.079 0.921 4 C -0.189 4.189 5 C -0.188 4.188 6 C 0.033 3.967 7 H 0.108 0.892 8 C -0.071 4.071 9 N -0.249 5.249 10 C 0.059 3.941 11 C -0.576 4.576 12 H 0.071 0.929 13 C -0.135 4.135 14 N -0.528 5.528 15 Si 0.712 3.288 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.029 4.029 20 C 0.023 3.977 21 C -0.184 4.184 22 C -0.110 4.110 23 C -0.211 4.211 24 C -0.060 4.060 25 N -0.163 5.163 26 O -0.274 6.274 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.369 12.182 2.495 13.180 hybrid contribution 1.347 -0.203 0.257 1.386 sum -3.022 11.979 2.751 12.657 Atomic orbital electron populations 1.21854 0.94506 1.02640 1.01570 1.22893 0.94376 0.95504 0.85912 0.92117 1.23293 0.96785 1.00613 0.98212 1.23138 0.97062 1.02272 0.96319 1.22772 0.85265 0.97242 0.91469 0.89220 1.22276 0.96498 0.98521 0.89822 1.62472 1.44734 1.15425 1.02267 1.19858 0.95793 0.80374 0.98058 1.21628 0.98519 0.92301 1.45178 0.92917 1.24876 0.96030 0.97347 0.95222 1.69952 1.30781 1.05001 1.47086 0.86745 0.84990 0.79025 0.78087 1.20934 1.21275 1.20086 1.20873 0.95641 0.98380 0.87989 1.21306 0.92532 0.88383 0.95463 1.21909 1.00181 0.99591 0.96678 1.21437 0.97548 0.98473 0.93578 1.22018 1.02830 0.95580 1.00679 1.22779 0.93874 0.96444 0.92860 1.67717 1.17272 1.29320 1.02022 1.88640 1.42171 1.64375 1.32248 0.92030 0.92144 0.92027 0.90611 0.90752 0.90223 0.90922 0.92774 0.93052 0.93976 0.94944 0.93083 0.91783 0.91496 0.85439 0.85703 0.85700 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.62 37.16 0.36 -1.43 16 2 C 0.07 1.00 4.08 -25.70 -0.10 0.89 16 3 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.15 -1.88 6.57 -24.48 -0.16 -2.04 16 5 C -0.15 -2.14 6.54 -24.78 -0.16 -2.30 16 6 C 0.09 1.67 3.39 -26.00 -0.09 1.58 16 7 H 0.09 1.96 6.53 -51.93 -0.34 1.62 16 8 C 0.06 1.12 4.29 -3.83 -0.02 1.10 16 9 N -0.53 -11.59 4.54 -237.52 -1.08 -12.67 16 10 C 0.18 4.88 4.77 -4.98 -0.02 4.85 16 11 C -0.54 -14.80 7.28 -34.44 -0.25 -15.05 16 12 H 0.05 1.43 6.01 -52.48 -0.32 1.12 16 13 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 14 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 15 Si 0.88 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.10 2.02 5.15 -4.98 -0.03 1.99 16 20 C 0.16 3.18 5.95 -82.59 -0.49 2.69 16 21 C -0.16 -2.65 9.72 -39.44 -0.38 -3.03 16 22 C -0.08 -1.19 10.18 -39.28 -0.40 -1.59 16 23 C -0.19 -2.73 10.11 -39.44 -0.40 -3.13 16 24 C 0.10 1.69 11.18 -17.55 -0.20 1.50 16 25 N -0.45 -9.61 9.09 -9.47 -0.09 -9.70 16 26 O -0.35 -6.65 10.62 -35.23 -0.37 -7.02 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 34 H 0.05 1.12 6.43 -51.93 -0.33 0.79 16 35 H 0.05 0.89 7.83 -51.93 -0.41 0.48 16 36 H 0.04 1.23 6.62 -51.93 -0.34 0.89 16 37 H 0.03 0.94 6.44 -51.93 -0.33 0.60 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.06 1.09 7.64 -51.93 -0.40 0.70 16 40 H 0.07 1.51 6.28 -51.93 -0.33 1.19 16 41 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 42 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.15 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -32.16 351.75 -9.95 -42.11 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.98 Total: 3.29 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.44 Total: -12.14 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.43 Total: -48.29 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.37 Total: -7.02 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.16 -9.95 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188556279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.558 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds