Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.26912 * 2 1 4 4 C 1.54944 * 110.30909 * 122.09447 * 2 1 3 5 5 C 1.55304 * 100.94124 * 155.36350 * 4 2 1 6 6 C 1.54391 * 102.25040 * 325.86300 * 5 4 2 7 7 H 1.08997 * 109.82734 * 261.75365 * 6 5 4 8 8 C 1.52997 * 109.82949 * 140.87324 * 6 5 4 9 9 N 1.46895 * 109.47074 * 180.18493 * 8 6 5 10 10 C 1.46897 * 111.00364 * 293.95287 * 9 8 6 11 11 C 1.50701 * 109.47192 * 299.43158 * 10 9 8 12 12 H 1.08003 * 119.99696 * 354.77659 * 11 10 9 13 13 C 1.37873 * 119.99841 * 174.77647 * 11 10 9 14 14 N 1.31515 * 120.00384 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99777 * 179.72345 * 13 11 10 16 16 H 1.48504 * 109.46836 * 90.00059 * 15 13 11 17 17 H 1.48494 * 109.47223 * 210.00235 * 15 13 11 18 18 H 1.48500 * 109.47039 * 330.00658 * 15 13 11 19 19 C 1.46906 * 111.00117 * 169.99652 * 9 8 6 20 20 C 1.50693 * 109.47423 * 199.60288 * 19 9 8 21 21 C 1.38227 * 119.61582 * 94.63973 * 20 19 9 22 22 C 1.38629 * 119.16610 * 179.97438 * 21 20 19 23 23 C 1.38677 * 118.41657 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.16390 * 359.97438 * 23 22 21 25 25 N 1.31857 * 119.62233 * 274.36640 * 20 19 9 26 26 O 1.43232 * 107.66309 * 21.31633 * 6 5 4 27 27 H 1.08998 * 109.46807 * 297.90874 * 1 2 3 28 28 H 1.09001 * 109.47035 * 57.90978 * 1 2 3 29 29 H 1.09003 * 109.46902 * 177.90675 * 1 2 3 30 30 H 1.08997 * 111.12910 * 37.44303 * 4 2 1 31 31 H 1.09006 * 111.15792 * 273.29160 * 4 2 1 32 32 H 1.08997 * 110.84751 * 207.68040 * 5 4 2 33 33 H 1.08999 * 110.85212 * 84.05447 * 5 4 2 34 34 H 1.09002 * 109.46994 * 60.18419 * 8 6 5 35 35 H 1.09004 * 109.47410 * 300.18612 * 8 6 5 36 36 H 1.08997 * 109.47142 * 179.43005 * 10 9 8 37 37 H 1.09002 * 109.46674 * 59.43149 * 10 9 8 38 38 H 0.97000 * 119.99962 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.47030 * 319.60653 * 19 9 8 40 40 H 1.09002 * 109.46545 * 79.60306 * 19 9 8 41 41 H 1.08008 * 120.42366 * 359.95777 * 21 20 19 42 42 H 1.07997 * 120.79305 * 179.97438 * 22 21 20 43 43 H 1.07993 * 120.42184 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.62014 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0679 -0.7721 1.2310 5 6 3.4700 -1.2018 0.7200 6 6 3.2113 -1.4426 -0.7829 7 1 3.0641 -2.5068 -0.9669 8 6 4.3991 -0.9338 -1.6021 9 7 4.1429 -1.1626 -3.0303 10 6 4.0988 -2.5992 -3.3338 11 6 5.4239 -3.2270 -2.9858 12 1 6.2461 -2.6072 -2.6597 13 6 5.5866 -4.5926 -3.0837 14 7 4.5856 -5.3474 -3.4812 15 14 7.2315 -5.3700 -2.6597 16 1 7.2561 -5.7203 -1.2168 17 1 7.4218 -6.5992 -3.4709 18 1 8.3240 -4.4083 -2.9542 19 6 5.1438 -0.4796 -3.8608 20 6 4.6101 -0.3196 -5.2610 21 6 3.9780 0.8558 -5.6210 22 6 3.4911 0.9931 -6.9117 23 6 3.6595 -0.0615 -7.7963 24 6 4.3028 -1.2059 -7.3651 25 7 4.7563 -1.3003 -6.1302 26 8 2.0282 -0.7192 -1.1416 27 1 -0.3633 0.4810 0.9081 28 1 -0.3633 0.5460 -0.8707 29 1 -0.3633 -1.0270 -0.0375 30 1 1.4472 -1.6404 1.4521 31 1 2.1497 -0.1191 2.1000 32 1 3.7967 -2.1195 1.2091 33 1 4.1975 -0.4033 0.8653 34 1 5.3012 -1.4684 -1.3046 35 1 4.5335 0.1330 -1.4234 36 1 3.8977 -2.7403 -4.3957 37 1 3.3088 -3.0701 -2.7487 38 1 4.7003 -6.3081 -3.5504 39 1 5.3569 0.5025 -3.4388 40 1 6.0592 -1.0706 -3.8862 41 1 3.8645 1.6570 -4.9057 42 1 2.9926 1.8998 -7.2209 43 1 3.2925 0.0105 -8.8093 44 1 4.4376 -2.0319 -8.0477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188556279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = -28.101343 kcal Electronic energy + Delta-G solvation = -23777.519483 eV Core-core repulsion = 20500.863618 eV Total energy + Delta-G solvation = -3276.655864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -41.04374 -40.47556 -38.10654 -34.57079 -33.48352 -33.09519 -33.00779 -32.04705 -29.22294 -28.61032 -26.38362 -25.14746 -24.22172 -23.35375 -22.22315 -21.89188 -20.94309 -18.60663 -17.74045 -17.53431 -17.06544 -16.94491 -16.62917 -16.25309 -15.97233 -15.53453 -15.13907 -14.78937 -14.38958 -14.26082 -14.07725 -14.06023 -13.68737 -13.47422 -13.07670 -12.92952 -12.83504 -12.61503 -12.50087 -12.42923 -12.36953 -12.24855 -11.95787 -11.80557 -11.61098 -11.55347 -11.47898 -10.67117 -10.53032 -10.27664 -10.05804 -9.79772 -8.89402 -8.06746 -6.24221 0.32461 0.56166 1.34371 1.36757 1.46338 2.40039 2.87050 3.04606 3.17790 3.51461 3.68715 3.74791 3.93229 3.95998 3.99266 4.12294 4.27175 4.32278 4.40081 4.41958 4.49773 4.56766 4.61087 4.72521 4.77808 4.83918 4.91389 4.92770 4.95136 4.98772 5.04873 5.14154 5.21693 5.33605 5.35642 5.37721 5.39134 5.41104 5.49321 5.85240 5.96977 6.11656 6.28495 6.41411 6.62876 6.95220 7.35599 7.44310 8.95733 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.007171 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.379204 B = 3903.531119 C = 6348.354992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.077 0.923 4 C -0.140 4.140 5 C -0.144 4.144 6 C 0.092 3.908 7 H 0.039 0.961 8 C 0.059 3.941 9 N -0.527 5.527 10 C 0.211 3.789 11 C -0.537 4.537 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.929 5.929 15 Si 0.952 3.048 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.104 3.896 20 C 0.125 3.875 21 C -0.162 4.162 22 C -0.077 4.077 23 C -0.175 4.175 24 C 0.071 3.929 25 N -0.511 5.511 26 O -0.386 6.386 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.007 0.993 37 H -0.004 1.004 38 H 0.260 0.740 39 H 0.097 0.903 40 H 0.032 0.968 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 15.851 3.313 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.095 0.905 4 C -0.178 4.178 5 C -0.182 4.182 6 C 0.034 3.966 7 H 0.057 0.943 8 C -0.069 4.069 9 N -0.250 5.250 10 C 0.084 3.916 11 C -0.576 4.576 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.569 5.569 15 Si 0.778 3.222 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.025 4.025 20 C -0.013 4.013 21 C -0.182 4.182 22 C -0.103 4.103 23 C -0.194 4.194 24 C -0.086 4.086 25 N -0.221 5.221 26 O -0.307 6.307 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.051 0.949 41 H 0.168 0.832 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.448 15.116 3.231 16.085 hybrid contribution 1.283 -1.017 -0.055 1.638 sum -3.165 14.099 3.176 14.795 Atomic orbital electron populations 1.21863 0.93193 1.02120 1.03043 1.23251 0.95512 0.95892 0.85125 0.90489 1.23283 0.94923 1.00916 0.98650 1.23116 0.99035 1.03116 0.92936 1.22551 0.85212 0.94496 0.94348 0.94323 1.22354 0.96235 1.00029 0.88274 1.62376 1.45962 1.12531 1.04154 1.19294 0.94165 0.83159 0.94954 1.21839 0.98842 0.92579 1.44308 0.92810 1.25741 0.99742 0.98026 0.95240 1.70101 1.33047 1.05233 1.48520 0.85649 0.80351 0.77899 0.78323 1.19565 1.21085 1.19497 1.20896 0.93620 0.98904 0.89042 1.21308 0.95076 0.89944 0.94955 1.22146 0.99098 0.98626 0.98343 1.21966 0.96232 0.99795 0.92320 1.22421 1.00471 0.94043 1.02490 1.23109 0.94997 0.98401 0.92089 1.67552 1.19464 1.31127 1.03952 1.88600 1.42196 1.64815 1.35048 0.88735 0.92620 0.93403 0.90960 0.87150 0.90285 0.88810 0.94500 0.89993 0.97466 0.98641 0.93065 0.88442 0.94930 0.83157 0.81211 0.81668 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.62 71.98 0.69 -2.55 16 2 C 0.06 1.55 4.08 31.26 0.13 1.68 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.14 -3.15 6.57 32.05 0.21 -2.94 16 5 C -0.14 -3.96 6.54 31.86 0.21 -3.75 16 6 C 0.09 3.53 3.39 31.07 0.11 3.63 16 7 H 0.04 1.85 6.53 -2.39 -0.02 1.84 16 8 C 0.06 2.35 4.29 86.30 0.37 2.72 16 9 N -0.53 -24.26 4.54 -905.38 -4.11 -28.36 16 10 C 0.21 11.96 4.77 85.56 0.41 12.37 16 11 C -0.54 -31.15 7.28 25.60 0.19 -30.97 16 12 H 0.05 3.05 6.01 -2.91 -0.02 3.03 16 13 C 0.01 0.65 5.46 84.65 0.46 1.11 16 14 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 15 Si 0.95 46.07 29.54 68.60 2.03 48.09 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 C 0.10 4.32 5.15 85.55 0.44 4.76 16 20 C 0.12 5.01 5.95 42.55 0.25 5.26 16 21 C -0.16 -4.98 9.72 22.36 0.22 -4.76 16 22 C -0.08 -1.92 10.18 22.47 0.23 -1.70 16 23 C -0.17 -4.57 10.11 22.36 0.23 -4.35 16 24 C 0.07 2.49 11.18 84.67 0.95 3.44 16 25 N -0.51 -22.61 9.09 -183.89 -1.67 -24.28 16 26 O -0.39 -14.67 10.62 -148.98 -1.58 -16.25 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 31 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.19 7.85 -2.39 -0.02 2.17 16 34 H 0.04 1.58 6.43 -2.39 -0.02 1.56 16 35 H 0.08 2.72 7.83 -2.39 -0.02 2.70 16 36 H 0.01 0.46 6.62 -2.39 -0.02 0.44 16 37 H 0.00 -0.28 6.44 -2.39 -0.02 -0.30 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.10 3.27 7.64 -2.39 -0.02 3.25 16 40 H 0.03 1.55 6.28 -2.39 -0.01 1.54 16 41 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 43 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.16 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -76.42 351.75 1.01 -75.42 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.97 Total: 19.64 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.08 Total: -16.04 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -5.49 Total: -110.86 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.58 Total: -16.25 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.42 1.01 -75.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188556279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.316 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds