Wall clock time and date at job start Tue Mar 31 2020 06:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.82222 * 2 1 4 4 C 1.54372 * 109.83435 * 239.11127 * 2 1 3 5 5 C 1.55304 * 102.25486 * 219.03784 * 4 2 1 6 6 C 1.54949 * 100.94288 * 34.13329 * 5 4 2 7 7 H 1.08995 * 110.30962 * 82.57000 * 6 5 4 8 8 C 1.52995 * 110.31145 * 204.64065 * 6 5 4 9 9 N 1.46895 * 109.47508 * 186.83707 * 8 6 5 10 10 C 1.46906 * 111.00074 * 287.91737 * 9 8 6 11 11 C 1.50700 * 109.46824 * 302.82575 * 10 9 8 12 12 H 1.07994 * 120.00192 * 355.22745 * 11 10 9 13 13 C 1.37883 * 119.99399 * 175.22822 * 11 10 9 14 14 N 1.31503 * 120.00636 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99355 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47418 * 270.00128 * 15 13 11 17 17 H 1.48500 * 109.47344 * 30.00463 * 15 13 11 18 18 H 1.48506 * 109.47012 * 149.99779 * 15 13 11 19 19 C 1.46897 * 111.00449 * 163.95979 * 9 8 6 20 20 C 1.50697 * 109.46970 * 188.18808 * 19 9 8 21 21 C 1.38230 * 119.61893 * 96.47242 * 20 19 9 22 22 C 1.38626 * 119.16477 * 179.97438 * 21 20 19 23 23 C 1.38671 * 118.41735 * 359.97438 * 22 21 20 24 24 C 1.38183 * 119.16594 * 359.97438 * 23 22 21 25 25 N 1.31854 * 119.62011 * 276.19024 * 20 19 9 26 26 O 1.43238 * 109.90823 * 120.92661 * 2 1 3 27 27 H 1.09008 * 109.47113 * 180.88731 * 1 2 3 28 28 H 1.08996 * 109.47693 * 300.89141 * 1 2 3 29 29 H 1.09002 * 109.47337 * 60.89494 * 1 2 3 30 30 H 1.09007 * 110.85172 * 100.84579 * 4 2 1 31 31 H 1.09002 * 110.84742 * 337.22633 * 4 2 1 32 32 H 1.09001 * 111.12841 * 276.21516 * 5 4 2 33 33 H 1.09004 * 111.16737 * 152.06803 * 5 4 2 34 34 H 1.09003 * 109.46902 * 66.84126 * 8 6 5 35 35 H 1.08993 * 109.47551 * 306.84254 * 8 6 5 36 36 H 1.08996 * 109.46804 * 182.82608 * 10 9 8 37 37 H 1.08999 * 109.47216 * 62.82344 * 10 9 8 38 38 H 0.97009 * 119.99656 * 359.97438 * 14 13 11 39 39 H 1.08995 * 109.47037 * 308.18930 * 19 9 8 40 40 H 1.08997 * 109.46982 * 68.18425 * 19 9 8 41 41 H 1.08003 * 120.41705 * 359.97438 * 21 20 19 42 42 H 1.07994 * 120.79100 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.42236 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.61687 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0255 0.0000 4 6 2.0537 -0.7455 -1.2462 5 6 3.2745 -1.5196 -0.6783 6 6 2.7777 -1.8430 0.7533 7 1 2.1457 -2.7309 0.7429 8 6 3.9665 -2.0494 1.6940 9 7 3.4821 -2.5136 3.0008 10 6 2.8087 -1.4294 3.7282 11 6 3.7549 -0.2670 3.8858 12 1 4.7790 -0.3556 3.5548 13 6 3.3128 0.9095 4.4528 14 7 2.0657 1.0176 4.8555 15 14 4.4858 2.3501 4.6489 16 1 5.1646 2.2600 5.9667 17 1 5.5010 2.3129 3.5657 18 1 3.7244 3.6227 4.5702 19 6 4.5782 -3.0806 3.7975 20 6 4.0161 -3.7248 5.0385 21 6 3.7774 -5.0863 5.0533 22 6 3.2607 -5.6691 6.2000 23 6 3.0027 -4.8573 7.2942 24 6 3.2678 -3.5040 7.2060 25 7 3.7629 -2.9842 6.0996 26 8 2.0177 -0.6922 1.1553 27 1 -0.3634 -1.0276 0.0159 28 1 -0.3634 0.5276 0.8818 29 1 -0.3634 0.4999 -0.8979 30 1 2.3657 -0.0409 -2.0172 31 1 1.3018 -1.4348 -1.6304 32 1 4.1627 -0.8884 -0.6527 33 1 3.4602 -2.4320 -1.2451 34 1 4.4995 -1.1067 1.8181 35 1 4.6399 -2.7945 1.2705 36 1 2.5044 -1.7862 4.7121 37 1 1.9292 -1.1087 3.1699 38 1 1.4565 0.2696 4.7534 39 1 5.1070 -3.8290 3.2073 40 1 5.2694 -2.2870 4.0813 41 1 3.9908 -5.6883 4.1824 42 1 3.0645 -6.7304 6.2405 43 1 2.5996 -5.2773 8.2039 44 1 3.0692 -2.8648 8.0537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188556301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:12 Heat of formation + Delta-G solvation = -4.130248 kcal Electronic energy + Delta-G solvation = -24149.054386 eV Core-core repulsion = 20873.437987 eV Total energy + Delta-G solvation = -3275.616400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.78239 -39.12287 -36.44031 -32.46689 -32.22415 -31.82628 -31.69066 -30.59890 -27.45905 -26.62229 -24.54569 -23.30824 -22.97535 -22.00501 -20.93417 -20.37887 -19.67162 -16.76416 -16.40972 -16.16454 -15.78172 -15.37666 -14.99120 -14.81648 -14.21728 -13.89413 -13.53929 -13.30455 -13.10834 -12.99354 -12.74956 -12.49260 -12.32507 -11.83366 -11.62499 -11.39213 -11.30518 -11.22329 -11.07438 -10.80126 -10.59404 -10.48466 -10.34921 -10.12532 -10.01318 -9.81079 -9.40051 -8.94357 -8.76930 -8.71745 -8.56841 -7.99802 -6.97057 -6.04605 -3.69634 1.54390 1.72725 3.54739 3.58810 3.72672 4.21374 4.34744 4.74951 4.80211 4.83495 4.99043 5.07544 5.12242 5.22965 5.39677 5.45841 5.54521 5.60149 5.66801 5.71749 5.73672 5.85992 5.88498 5.92780 5.97445 6.01358 6.03793 6.09562 6.12670 6.29909 6.36938 6.41226 6.49564 6.52320 6.59497 6.70548 6.89242 7.13408 7.36987 7.73887 7.86685 8.07579 8.36137 8.43107 8.63604 8.83388 9.15252 9.99125 11.34528 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.006411 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.273533 B = 4366.145550 C = 5779.099876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.151 4.151 6 C 0.094 3.906 7 H 0.063 0.937 8 C 0.059 3.941 9 N -0.531 5.531 10 C 0.172 3.828 11 C -0.592 4.592 12 H 0.039 0.961 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 1.061 2.939 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.288 1.288 19 C 0.103 3.897 20 C 0.156 3.844 21 C -0.166 4.166 22 C -0.085 4.085 23 C -0.189 4.189 24 C 0.098 3.902 25 N -0.446 5.446 26 O -0.335 6.335 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.044 0.956 38 H 0.268 0.732 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -10.592 -6.719 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 H 0.090 0.910 4 C -0.186 4.186 5 C -0.189 4.189 6 C 0.036 3.964 7 H 0.080 0.920 8 C -0.069 4.069 9 N -0.255 5.255 10 C 0.046 3.954 11 C -0.631 4.631 12 H 0.058 0.942 13 C -0.179 4.179 14 N -0.553 5.553 15 Si 0.891 3.109 16 H -0.219 1.219 17 H -0.221 1.221 18 H -0.214 1.214 19 C -0.025 4.025 20 C 0.018 3.982 21 C -0.187 4.187 22 C -0.111 4.111 23 C -0.209 4.209 24 C -0.060 4.060 25 N -0.155 5.155 26 O -0.254 6.254 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.509 -8.434 -6.081 10.506 hybrid contribution 0.291 -1.873 -0.516 1.964 sum 1.800 -10.306 -6.597 12.369 Atomic orbital electron populations 1.22102 0.95782 1.01940 1.01753 1.22650 0.93866 0.96723 0.85584 0.91008 1.23152 0.97758 0.99468 0.98253 1.23270 0.98527 1.00461 0.96642 1.22839 0.92597 0.89468 0.91476 0.91958 1.22106 0.94864 0.99891 0.90078 1.62601 1.24583 1.35427 1.02910 1.20074 0.95044 0.86977 0.93259 1.22199 0.97260 1.00147 1.43532 0.94241 1.25381 0.98589 0.99886 0.94044 1.70684 1.04640 1.34899 1.45086 0.83677 0.74967 0.76374 0.75839 1.21935 1.22089 1.21411 1.20833 0.93911 0.97849 0.89942 1.21250 0.93286 0.89784 0.93885 1.21906 1.01829 0.96212 0.98738 1.21431 0.96839 0.99760 0.93102 1.22046 1.03592 0.95659 0.99637 1.22826 0.94521 0.92691 0.95921 1.67789 1.09605 1.39009 0.99048 1.88874 1.69864 1.39615 1.27058 0.92731 0.91786 0.92496 0.90843 0.91040 0.90529 0.90719 0.91939 0.92347 0.95460 0.93792 0.92189 0.91654 0.92129 0.85431 0.85647 0.85618 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.44 37.16 0.35 -2.07 16 2 C 0.07 1.19 4.15 -26.01 -0.11 1.08 16 3 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 4 C -0.15 -1.97 6.54 -24.79 -0.16 -2.13 16 5 C -0.15 -2.11 6.57 -24.48 -0.16 -2.27 16 6 C 0.09 1.71 3.56 -25.70 -0.09 1.61 16 7 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 8 C 0.06 1.15 4.61 -3.83 -0.02 1.14 16 9 N -0.53 -11.59 4.67 -237.53 -1.11 -12.70 16 10 C 0.17 4.54 3.80 -4.97 -0.02 4.53 16 11 C -0.59 -16.83 7.35 -34.44 -0.25 -17.09 16 12 H 0.04 1.14 5.95 -52.49 -0.31 0.82 16 13 C 0.03 0.75 5.46 -17.82 -0.10 0.65 16 14 N -0.92 -28.92 13.65 55.43 0.76 -28.16 16 15 Si 1.06 26.80 29.90 -169.99 -5.08 21.72 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 C 0.10 2.06 5.11 -4.98 -0.03 2.03 16 20 C 0.16 3.06 5.69 -82.59 -0.47 2.59 16 21 C -0.17 -2.64 9.72 -39.44 -0.38 -3.02 16 22 C -0.09 -1.19 10.18 -39.28 -0.40 -1.58 16 23 C -0.19 -2.73 10.11 -39.44 -0.40 -3.12 16 24 C 0.10 1.74 11.18 -17.55 -0.20 1.54 16 25 N -0.45 -9.58 8.57 -9.47 -0.08 -9.66 16 26 O -0.34 -7.20 8.05 -35.23 -0.28 -7.48 16 27 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 32 H 0.08 1.08 8.06 -51.93 -0.42 0.67 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.41 6.06 -51.93 -0.31 1.09 16 35 H 0.06 0.95 7.83 -51.93 -0.41 0.55 16 36 H 0.03 0.79 5.85 -51.93 -0.30 0.49 16 37 H 0.04 1.28 5.45 -51.93 -0.28 1.00 16 38 H 0.27 8.59 7.19 -40.82 -0.29 8.30 16 39 H 0.07 1.07 7.79 -51.93 -0.40 0.67 16 40 H 0.06 1.37 6.71 -51.93 -0.35 1.02 16 41 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -33.76 347.62 -9.93 -43.70 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.94 Total: 3.48 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.43 Total: -16.13 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.43 Total: -50.53 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.28 Total: -7.48 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -5.08 Total: 21.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.76 -9.93 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188556301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.568 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds