Wall clock time and date at job start Tue Mar 31 2020 06:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.82222 * 2 1 4 4 C 1.54372 * 109.83435 * 239.11127 * 2 1 3 5 5 C 1.55304 * 102.25486 * 219.03784 * 4 2 1 6 6 C 1.54949 * 100.94288 * 34.13329 * 5 4 2 7 7 H 1.08995 * 110.30962 * 82.57000 * 6 5 4 8 8 C 1.52995 * 110.31145 * 204.64065 * 6 5 4 9 9 N 1.46895 * 109.47508 * 186.83707 * 8 6 5 10 10 C 1.46906 * 111.00074 * 287.91737 * 9 8 6 11 11 C 1.50700 * 109.46824 * 302.82575 * 10 9 8 12 12 H 1.07994 * 120.00192 * 355.22745 * 11 10 9 13 13 C 1.37883 * 119.99399 * 175.22822 * 11 10 9 14 14 N 1.31503 * 120.00636 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99355 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47418 * 270.00128 * 15 13 11 17 17 H 1.48500 * 109.47344 * 30.00463 * 15 13 11 18 18 H 1.48506 * 109.47012 * 149.99779 * 15 13 11 19 19 C 1.46897 * 111.00449 * 163.95979 * 9 8 6 20 20 C 1.50697 * 109.46970 * 188.18808 * 19 9 8 21 21 C 1.38230 * 119.61893 * 96.47242 * 20 19 9 22 22 C 1.38626 * 119.16477 * 179.97438 * 21 20 19 23 23 C 1.38671 * 118.41735 * 359.97438 * 22 21 20 24 24 C 1.38183 * 119.16594 * 359.97438 * 23 22 21 25 25 N 1.31854 * 119.62011 * 276.19024 * 20 19 9 26 26 O 1.43238 * 109.90823 * 120.92661 * 2 1 3 27 27 H 1.09008 * 109.47113 * 180.88731 * 1 2 3 28 28 H 1.08996 * 109.47693 * 300.89141 * 1 2 3 29 29 H 1.09002 * 109.47337 * 60.89494 * 1 2 3 30 30 H 1.09007 * 110.85172 * 100.84579 * 4 2 1 31 31 H 1.09002 * 110.84742 * 337.22633 * 4 2 1 32 32 H 1.09001 * 111.12841 * 276.21516 * 5 4 2 33 33 H 1.09004 * 111.16737 * 152.06803 * 5 4 2 34 34 H 1.09003 * 109.46902 * 66.84126 * 8 6 5 35 35 H 1.08993 * 109.47551 * 306.84254 * 8 6 5 36 36 H 1.08996 * 109.46804 * 182.82608 * 10 9 8 37 37 H 1.08999 * 109.47216 * 62.82344 * 10 9 8 38 38 H 0.97009 * 119.99656 * 359.97438 * 14 13 11 39 39 H 1.08995 * 109.47037 * 308.18930 * 19 9 8 40 40 H 1.08997 * 109.46982 * 68.18425 * 19 9 8 41 41 H 1.08003 * 120.41705 * 359.97438 * 21 20 19 42 42 H 1.07994 * 120.79100 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.42236 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.61687 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0255 0.0000 4 6 2.0537 -0.7455 -1.2462 5 6 3.2745 -1.5196 -0.6783 6 6 2.7777 -1.8430 0.7533 7 1 2.1457 -2.7309 0.7429 8 6 3.9665 -2.0494 1.6940 9 7 3.4821 -2.5136 3.0008 10 6 2.8087 -1.4294 3.7282 11 6 3.7549 -0.2670 3.8858 12 1 4.7790 -0.3556 3.5548 13 6 3.3128 0.9095 4.4528 14 7 2.0657 1.0176 4.8555 15 14 4.4858 2.3501 4.6489 16 1 5.1646 2.2600 5.9667 17 1 5.5010 2.3129 3.5657 18 1 3.7244 3.6227 4.5702 19 6 4.5782 -3.0806 3.7975 20 6 4.0161 -3.7248 5.0385 21 6 3.7774 -5.0863 5.0533 22 6 3.2607 -5.6691 6.2000 23 6 3.0027 -4.8573 7.2942 24 6 3.2678 -3.5040 7.2060 25 7 3.7629 -2.9842 6.0996 26 8 2.0177 -0.6922 1.1553 27 1 -0.3634 -1.0276 0.0159 28 1 -0.3634 0.5276 0.8818 29 1 -0.3634 0.4999 -0.8979 30 1 2.3657 -0.0409 -2.0172 31 1 1.3018 -1.4348 -1.6304 32 1 4.1627 -0.8884 -0.6527 33 1 3.4602 -2.4320 -1.2451 34 1 4.4995 -1.1067 1.8181 35 1 4.6399 -2.7945 1.2705 36 1 2.5044 -1.7862 4.7121 37 1 1.9292 -1.1087 3.1699 38 1 1.4565 0.2696 4.7534 39 1 5.1070 -3.8290 3.2073 40 1 5.2694 -2.2870 4.0813 41 1 3.9908 -5.6883 4.1824 42 1 3.0645 -6.7304 6.2405 43 1 2.5996 -5.2773 8.2039 44 1 3.0692 -2.8648 8.0537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188556301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:11 Heat of formation + Delta-G solvation = -27.132964 kcal Electronic energy + Delta-G solvation = -24150.051859 eV Core-core repulsion = 20873.437987 eV Total energy + Delta-G solvation = -3276.613872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13249 -40.48983 -38.13392 -34.65578 -33.52984 -33.13694 -33.01433 -32.00349 -28.95683 -28.45089 -26.20221 -25.12240 -24.27475 -23.40212 -22.20471 -21.88976 -21.27505 -18.72101 -17.83509 -17.50133 -17.20779 -16.78824 -16.50596 -16.30981 -15.87393 -15.57540 -15.24733 -14.81801 -14.39301 -14.25305 -14.06820 -13.92529 -13.62968 -13.55027 -13.19112 -13.02890 -12.85364 -12.60031 -12.57341 -12.51691 -12.20225 -12.02876 -11.94420 -11.65799 -11.60429 -11.47511 -11.07030 -10.69954 -10.36157 -10.24787 -10.05798 -9.87274 -8.88357 -8.42345 -6.08408 0.26613 0.51872 1.44586 1.55369 1.70012 2.61041 2.85974 3.04797 3.37464 3.43194 3.63341 3.68018 3.90317 3.93612 4.06290 4.09847 4.26157 4.30787 4.34010 4.35609 4.43003 4.53408 4.59745 4.66567 4.70953 4.77924 4.82292 4.88123 4.89290 4.98226 5.01823 5.09390 5.18586 5.30348 5.31389 5.33605 5.39113 5.40904 5.55525 5.91019 6.03428 6.14762 6.43650 6.59035 6.60636 6.76237 7.31870 7.68026 8.93059 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.006411 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.273533 B = 4366.145550 C = 5779.099876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 H 0.054 0.946 4 C -0.134 4.134 5 C -0.139 4.139 6 C 0.087 3.913 7 H 0.063 0.937 8 C 0.059 3.941 9 N -0.528 5.528 10 C 0.195 3.805 11 C -0.578 4.578 12 H 0.031 0.969 13 C -0.033 4.033 14 N -0.941 5.941 15 Si 1.105 2.895 16 H -0.282 1.282 17 H -0.276 1.276 18 H -0.285 1.285 19 C 0.106 3.894 20 C 0.119 3.881 21 C -0.160 4.160 22 C -0.077 4.077 23 C -0.173 4.173 24 C 0.068 3.932 25 N -0.506 5.506 26 O -0.386 6.386 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.025 0.975 35 H 0.098 0.902 36 H 0.001 0.999 37 H 0.015 0.985 38 H 0.249 0.751 39 H 0.106 0.894 40 H 0.022 0.978 41 H 0.157 0.843 42 H 0.173 0.827 43 H 0.165 0.835 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -13.250 -8.422 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.004 4.004 3 H 0.072 0.928 4 C -0.171 4.171 5 C -0.177 4.177 6 C 0.029 3.971 7 H 0.081 0.919 8 C -0.069 4.069 9 N -0.251 5.251 10 C 0.068 3.932 11 C -0.617 4.617 12 H 0.050 0.950 13 C -0.230 4.230 14 N -0.581 5.581 15 Si 0.929 3.071 16 H -0.209 1.209 17 H -0.201 1.201 18 H -0.211 1.211 19 C -0.022 4.022 20 C -0.018 4.018 21 C -0.181 4.181 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.089 4.089 25 N -0.216 5.216 26 O -0.306 6.306 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.019 0.981 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.040 0.960 41 H 0.175 0.825 42 H 0.190 0.810 43 H 0.182 0.818 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.267 -11.116 -7.801 13.768 hybrid contribution 0.058 -1.161 0.056 1.164 sum 2.325 -12.277 -7.745 14.701 Atomic orbital electron populations 1.22050 0.94817 1.02110 1.01864 1.22891 0.94783 0.96156 0.86542 0.92813 1.23105 0.97644 0.99695 0.96652 1.23238 0.98445 1.02019 0.94039 1.22990 0.91862 0.88710 0.93527 0.91912 1.22234 0.95998 0.99136 0.89500 1.62529 1.25758 1.33278 1.03582 1.19556 0.94073 0.87584 0.91940 1.22388 0.96989 1.00682 1.41650 0.95049 1.26774 0.99225 1.03077 0.93901 1.70827 1.05480 1.34219 1.47532 0.83094 0.73651 0.73550 0.76759 1.20858 1.20120 1.21130 1.20910 0.92715 0.97612 0.91001 1.21302 0.95662 0.91562 0.93324 1.22190 1.00648 0.94633 1.00588 1.21980 0.94762 1.01863 0.91692 1.22425 1.01458 0.94027 1.01361 1.23063 0.95712 0.94822 0.95336 1.67594 1.11710 1.41452 1.00813 1.88827 1.70717 1.40962 1.30092 0.92345 0.94957 0.89139 0.88432 0.89024 0.90961 0.87210 0.95625 0.88415 0.98087 0.96736 0.94169 0.87638 0.95966 0.82520 0.80963 0.81750 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.44 71.98 0.68 -3.97 16 2 C 0.05 1.85 4.15 31.06 0.13 1.98 16 3 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 4 C -0.13 -3.19 6.54 31.85 0.21 -2.98 16 5 C -0.14 -3.55 6.57 32.05 0.21 -3.34 16 6 C 0.09 3.11 3.56 31.26 0.11 3.22 16 7 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 8 C 0.06 2.32 4.61 86.30 0.40 2.72 16 9 N -0.53 -23.60 4.67 -905.41 -4.23 -27.83 16 10 C 0.20 10.94 3.80 85.56 0.32 11.26 16 11 C -0.58 -34.59 7.35 25.60 0.19 -34.40 16 12 H 0.03 1.89 5.95 -2.91 -0.02 1.88 16 13 C -0.03 -2.02 5.46 84.66 0.46 -1.56 16 14 N -0.94 -62.68 13.65 21.45 0.29 -62.39 16 15 Si 1.10 55.76 29.90 68.60 2.05 57.81 16 16 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 19 C 0.11 4.28 5.11 85.56 0.44 4.72 16 20 C 0.12 4.70 5.69 42.55 0.24 4.94 16 21 C -0.16 -4.71 9.72 22.36 0.22 -4.49 16 22 C -0.08 -1.86 10.18 22.47 0.23 -1.64 16 23 C -0.17 -4.59 10.11 22.36 0.23 -4.36 16 24 C 0.07 2.45 11.18 84.67 0.95 3.40 16 25 N -0.51 -22.71 8.57 -183.88 -1.58 -24.28 16 26 O -0.39 -17.25 8.05 -148.98 -1.20 -18.45 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.09 1.85 7.85 -2.39 -0.02 1.83 16 32 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 1.19 6.06 -2.39 -0.01 1.17 16 35 H 0.10 2.99 7.83 -2.39 -0.02 2.97 16 36 H 0.00 0.07 5.85 -2.39 -0.01 0.06 16 37 H 0.01 0.92 5.45 -2.39 -0.01 0.91 16 38 H 0.25 17.14 7.19 -92.70 -0.67 16.48 16 39 H 0.11 3.29 7.79 -2.39 -0.02 3.27 16 40 H 0.02 1.05 6.71 -2.39 -0.02 1.03 16 41 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 42 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.15 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -81.27 347.62 1.42 -79.84 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.07 Total: 19.80 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 5.01 Total: -24.51 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -5.51 Total: -114.50 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.20 Total: -18.45 kcal Atomic # 14 Polarization: 55.76 SS G_CDS: 2.05 Total: 57.81 kcal Total: -81.27 1.42 -79.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188556301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.710 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds