Wall clock time and date at job start Tue Mar 31 2020 08:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 C 1.38315 * 119.96139 * 269.72684 * 17 16 15 19 19 C 1.38260 * 120.14835 * 179.72768 * 18 17 16 20 20 C 1.38122 * 120.07580 * 0.54288 * 19 18 17 21 21 C 1.38889 * 119.92612 * 359.73038 * 20 19 18 22 22 N 1.39670 * 120.07644 * 179.97438 * 21 20 19 23 23 C 1.46507 * 120.00201 * 180.02562 * 22 21 20 24 24 C 1.46501 * 120.00160 * 0.02562 * 22 21 20 25 25 C 1.38077 * 119.96623 * 89.99940 * 17 16 15 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 32 32 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 33 33 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 34 34 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 35 35 H 1.08003 * 119.92331 * 359.97266 * 18 17 16 36 36 H 1.07998 * 119.96036 * 180.27478 * 19 18 17 37 37 H 1.08001 * 120.03802 * 179.75595 * 20 19 18 38 38 H 1.08995 * 109.46708 * 89.99760 * 23 22 21 39 39 H 1.08996 * 109.47476 * 210.00384 * 23 22 21 40 40 H 1.09000 * 109.46613 * 330.00342 * 23 22 21 41 41 H 1.08993 * 109.47342 * 59.99547 * 24 22 21 42 42 H 1.08993 * 109.47333 * 180.02562 * 24 22 21 43 43 H 1.09007 * 109.46799 * 299.99848 * 24 22 21 44 44 H 1.08003 * 120.03451 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 6 4.5573 -0.4885 -6.2646 19 6 5.0218 -1.1441 -7.3898 20 6 4.1325 -1.7592 -8.2491 21 6 2.7706 -1.7235 -7.9789 22 7 1.8684 -2.3440 -8.8460 23 6 0.4321 -2.3048 -8.5598 24 6 2.3584 -3.0341 -10.0418 25 6 2.3076 -1.0686 -6.8445 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 3.6480 -1.1211 -3.3986 32 1 1.9760 -1.5503 -3.8327 33 1 1.7019 0.6477 -4.9480 34 1 3.3741 1.0764 -4.5137 35 1 5.2544 -0.0041 -5.5969 36 1 6.0809 -1.1716 -7.5992 37 1 4.4957 -2.2678 -9.1299 38 1 -0.0073 -1.4231 -9.0261 39 1 -0.0424 -3.2014 -8.9584 40 1 0.2777 -2.2607 -7.4817 41 1 3.0345 -3.8365 -9.7469 42 1 1.5150 -3.4526 -10.5910 43 1 2.8902 -2.3262 -10.6776 44 1 1.2493 -1.0392 -6.6312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189374650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:36 Heat of formation + Delta-G solvation = -19.053888 kcal Electronic energy + Delta-G solvation = -22243.021653 eV Core-core repulsion = 18966.758116 eV Total energy + Delta-G solvation = -3276.263537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 12.92 seconds Orbital eigenvalues (eV) -39.83397 -38.78576 -36.62652 -34.82495 -33.46748 -32.31614 -30.53363 -29.83720 -28.80994 -27.99125 -25.23733 -24.96339 -24.30080 -21.71867 -20.95348 -20.06528 -19.28225 -17.38795 -16.95109 -16.05516 -15.68470 -15.49718 -15.30216 -15.16525 -14.91732 -14.25633 -14.10593 -13.87335 -13.32613 -13.03176 -12.92608 -12.66507 -12.60370 -12.38819 -12.28783 -12.09057 -11.69654 -11.60836 -11.41398 -11.06543 -10.94404 -10.86669 -10.69201 -10.63357 -10.29736 -10.20586 -9.88906 -9.03119 -9.00677 -8.65972 -8.51186 -7.84609 -7.41587 -6.09602 -4.18805 1.41051 1.59474 2.92481 3.27151 3.32242 3.33546 3.49496 3.82441 4.19284 4.42203 4.69783 4.73451 4.92486 4.98871 5.03222 5.16317 5.22268 5.30686 5.32389 5.34498 5.35779 5.43480 5.46266 5.58974 5.65366 5.72179 5.95540 6.00181 6.10243 6.23430 6.38963 6.52723 6.75686 6.85415 6.86122 7.00288 7.07141 7.19134 7.36979 7.51944 7.60794 7.73262 7.95528 8.18621 8.73266 8.82065 9.20626 9.49025 10.96345 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.002630 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.763435 B =10644.586527 C =10891.387401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.711 5.711 13 C 0.499 3.501 14 O -0.558 6.558 15 C -0.134 4.134 16 C -0.065 4.065 17 C -0.029 4.029 18 C -0.173 4.173 19 C -0.073 4.073 20 C -0.203 4.203 21 C 0.211 3.789 22 N -0.642 5.642 23 C 0.093 3.907 24 C 0.099 3.901 25 C -0.192 4.192 26 H 0.025 0.975 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 -8.291 -23.180 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.359 5.359 13 C 0.284 3.716 14 O -0.437 6.437 15 C -0.174 4.174 16 C -0.103 4.103 17 C -0.030 4.030 18 C -0.192 4.192 19 C -0.092 4.092 20 C -0.226 4.226 21 C 0.111 3.889 22 N -0.354 5.354 23 C -0.050 4.050 24 C -0.045 4.045 25 C -0.214 4.214 26 H 0.044 0.956 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.896 -7.407 -23.159 24.487 hybrid contribution 0.376 -1.050 0.832 1.391 sum 3.272 -8.456 -22.328 24.098 Atomic orbital electron populations 1.22073 0.98580 0.99018 1.00843 1.18712 0.90964 0.93985 0.80158 0.93448 1.21201 1.32418 1.13188 0.90408 0.92160 1.24899 0.94846 0.94969 0.99052 1.69899 1.35880 1.22442 1.23933 0.86508 0.79168 0.79575 0.81830 1.21142 1.20183 1.20183 1.46543 1.65161 1.13534 1.10671 1.20498 0.78615 0.87567 0.84893 1.90646 1.51522 1.16253 1.85318 1.21635 1.02944 0.99314 0.93518 1.20344 1.02796 0.97014 0.90152 1.19748 0.93126 0.95091 0.95004 1.20876 0.95007 1.04224 0.99141 1.20848 0.98849 0.95644 0.93820 1.20563 0.91357 1.07957 1.02683 1.17785 0.89299 0.92156 0.89702 1.46288 1.04871 1.59333 1.24947 1.21661 0.80214 1.01169 1.01997 1.21548 0.99910 0.96264 0.86741 1.20592 0.99831 1.05013 0.95976 0.95552 0.89214 0.96688 0.92550 0.77964 0.89381 0.89614 0.90386 0.90105 0.86300 0.86369 0.86603 0.93492 0.91720 0.91106 0.92971 0.91099 0.93005 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.84 2.56 -69.09 -0.18 6.66 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.71 -15.05 5.07 -54.93 -0.28 -15.33 16 13 C 0.50 10.00 7.79 -10.98 -0.09 9.92 16 14 O -0.56 -13.42 15.64 5.56 0.09 -13.33 16 15 C -0.13 -1.95 5.68 -27.88 -0.16 -2.11 16 16 C -0.07 -0.92 4.63 -27.88 -0.13 -1.05 16 17 C -0.03 -0.37 5.13 -104.65 -0.54 -0.90 16 18 C -0.17 -2.04 9.70 -39.54 -0.38 -2.43 16 19 C -0.07 -0.77 10.04 -39.62 -0.40 -1.17 16 20 C -0.20 -2.15 9.31 -39.38 -0.37 -2.52 16 21 C 0.21 2.38 6.55 -83.79 -0.55 1.83 16 22 N -0.64 -5.94 3.41 -187.55 -0.64 -6.58 16 23 C 0.09 0.70 10.16 59.85 0.61 1.30 16 24 C 0.10 0.65 9.40 59.85 0.56 1.21 16 25 C -0.19 -2.31 8.86 -39.38 -0.35 -2.66 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.01 6.73 -52.49 -0.35 0.66 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 40 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 41 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 42 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 43 H 0.05 0.32 7.95 -51.92 -0.41 -0.09 16 44 H 0.12 1.37 6.14 -52.48 -0.32 1.04 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -32.00 361.24 -8.83 -40.82 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.03 Total: 5.99 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.01 Total: -8.24 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.29 Total: -46.49 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.00 -8.83 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189374650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.769 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.92 seconds