Wall clock time and date at job start Tue Mar 31 2020 08:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 C 1.38315 * 119.96139 * 269.72684 * 17 16 15 19 19 C 1.38260 * 120.14835 * 179.72768 * 18 17 16 20 20 C 1.38122 * 120.07580 * 0.54288 * 19 18 17 21 21 C 1.38889 * 119.92612 * 359.73038 * 20 19 18 22 22 N 1.39670 * 120.07644 * 179.97438 * 21 20 19 23 23 C 1.46507 * 120.00201 * 180.02562 * 22 21 20 24 24 C 1.46501 * 120.00160 * 0.02562 * 22 21 20 25 25 C 1.38077 * 119.96623 * 89.99940 * 17 16 15 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 32 32 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 33 33 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 34 34 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 35 35 H 1.08003 * 119.92331 * 359.97266 * 18 17 16 36 36 H 1.07998 * 119.96036 * 180.27478 * 19 18 17 37 37 H 1.08001 * 120.03802 * 179.75595 * 20 19 18 38 38 H 1.08995 * 109.46708 * 89.99760 * 23 22 21 39 39 H 1.08996 * 109.47476 * 210.00384 * 23 22 21 40 40 H 1.09000 * 109.46613 * 330.00342 * 23 22 21 41 41 H 1.08993 * 109.47342 * 59.99547 * 24 22 21 42 42 H 1.08993 * 109.47333 * 180.02562 * 24 22 21 43 43 H 1.09007 * 109.46799 * 299.99848 * 24 22 21 44 44 H 1.08003 * 120.03451 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 6 4.5573 -0.4885 -6.2646 19 6 5.0218 -1.1441 -7.3898 20 6 4.1325 -1.7592 -8.2491 21 6 2.7706 -1.7235 -7.9789 22 7 1.8684 -2.3440 -8.8460 23 6 0.4321 -2.3048 -8.5598 24 6 2.3584 -3.0341 -10.0418 25 6 2.3076 -1.0686 -6.8445 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 3.6480 -1.1211 -3.3986 32 1 1.9760 -1.5503 -3.8327 33 1 1.7019 0.6477 -4.9480 34 1 3.3741 1.0764 -4.5137 35 1 5.2544 -0.0041 -5.5969 36 1 6.0809 -1.1716 -7.5992 37 1 4.4957 -2.2678 -9.1299 38 1 -0.0073 -1.4231 -9.0261 39 1 -0.0424 -3.2014 -8.9584 40 1 0.2777 -2.2607 -7.4817 41 1 3.0345 -3.8365 -9.7469 42 1 1.5150 -3.4526 -10.5910 43 1 2.8902 -2.3262 -10.6776 44 1 1.2493 -1.0392 -6.6312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189374650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:24 Heat of formation + Delta-G solvation = -37.979910 kcal Electronic energy + Delta-G solvation = -22243.842347 eV Core-core repulsion = 18966.758116 eV Total energy + Delta-G solvation = -3277.084231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -40.83033 -40.29154 -37.43672 -36.70358 -34.58737 -34.26826 -31.59359 -30.99326 -30.10771 -28.84390 -27.34037 -25.68974 -25.49009 -22.92801 -22.34581 -21.15681 -20.89156 -18.88372 -18.11633 -17.33190 -17.13625 -16.89593 -16.35926 -16.19965 -16.00032 -15.86529 -15.06913 -14.93436 -14.64516 -14.41880 -14.02709 -13.94535 -13.62535 -13.51924 -13.43840 -13.04997 -12.96345 -12.85286 -12.78793 -12.67454 -12.64916 -12.30473 -12.25537 -12.14493 -11.89637 -11.61678 -11.11199 -10.75024 -10.62206 -10.53710 -9.71818 -9.60132 -8.17131 -8.15488 -6.34802 0.54214 0.74843 1.45019 1.47400 1.55196 1.87249 2.29253 2.36956 2.67490 3.02028 3.13067 3.80470 4.00059 4.09031 4.14229 4.27437 4.31851 4.42324 4.44969 4.53572 4.62345 4.69407 4.72228 4.78613 4.79279 4.82262 4.90895 4.92781 4.93689 5.09140 5.11092 5.15132 5.24118 5.43410 5.44731 5.62774 5.68660 5.70620 5.87809 5.92369 6.01975 6.11006 6.40679 6.60750 6.73410 7.00590 7.33183 7.60466 8.89162 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.002630 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.763435 B =10644.586527 C =10891.387401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.286 1.286 10 H -0.263 1.263 11 H -0.270 1.270 12 N -0.708 5.708 13 C 0.495 3.505 14 O -0.603 6.603 15 C -0.116 4.116 16 C -0.058 4.058 17 C -0.038 4.038 18 C -0.187 4.187 19 C -0.073 4.073 20 C -0.207 4.207 21 C 0.203 3.797 22 N -0.647 5.647 23 C 0.088 3.912 24 C 0.093 3.907 25 C -0.206 4.206 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.011 0.989 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -10.889 -24.446 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.212 1.212 10 H -0.188 1.188 11 H -0.196 1.196 12 N -0.357 5.357 13 C 0.283 3.717 14 O -0.485 6.485 15 C -0.156 4.156 16 C -0.096 4.096 17 C -0.039 4.039 18 C -0.207 4.207 19 C -0.091 4.091 20 C -0.229 4.229 21 C 0.101 3.899 22 N -0.359 5.359 23 C -0.055 4.055 24 C -0.049 4.049 25 C -0.228 4.228 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.240 0.760 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.877 -10.053 -24.468 26.735 hybrid contribution 0.053 -0.217 1.115 1.137 sum 3.930 -10.271 -23.353 25.813 Atomic orbital electron populations 1.21895 0.98385 0.99423 0.99511 1.18322 0.91101 0.91873 0.82179 0.98595 1.21537 1.32634 1.13590 0.90858 0.90842 1.25837 0.94883 0.95605 1.02414 1.70055 1.37002 1.23949 1.24661 0.85375 0.78648 0.78700 0.77475 1.21175 1.18802 1.19558 1.46324 1.65261 1.14270 1.09836 1.21453 0.77281 0.87126 0.85818 1.90627 1.53266 1.18560 1.86071 1.21579 1.04286 0.99266 0.90473 1.20206 1.01781 0.96695 0.90902 1.19588 0.93748 0.95900 0.94674 1.21010 0.94721 1.04933 1.00035 1.21129 1.00165 0.94722 0.93083 1.20848 0.91128 1.07705 1.03230 1.17971 0.90124 0.92026 0.89765 1.46556 1.05235 1.58852 1.25212 1.21770 0.79658 1.02293 1.01760 1.21724 1.00936 0.96289 0.85959 1.20657 0.99881 1.05674 0.96588 0.94063 0.91554 0.96963 0.92548 0.75969 0.87127 0.87187 0.91752 0.91516 0.85928 0.84058 0.84698 0.93362 0.89628 0.91834 0.92527 0.89138 0.92672 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.27 2.56 44.24 0.11 14.38 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -29.44 8.73 25.60 0.22 -29.21 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.20 16 8 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 9 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 N -0.71 -29.90 5.07 -446.10 -2.26 -32.16 16 13 C 0.50 19.99 7.79 87.66 0.68 20.68 16 14 O -0.60 -30.09 15.64 -3.02 -0.05 -30.14 16 15 C -0.12 -3.26 5.68 29.85 0.17 -3.09 16 16 C -0.06 -1.63 4.63 29.85 0.14 -1.49 16 17 C -0.04 -0.94 5.13 -19.89 -0.10 -1.05 16 18 C -0.19 -4.20 9.70 22.29 0.22 -3.99 16 19 C -0.07 -1.39 10.04 22.25 0.22 -1.16 16 20 C -0.21 -3.91 9.31 22.40 0.21 -3.70 16 21 C 0.20 4.24 6.55 38.22 0.25 4.49 16 22 N -0.65 -10.64 3.41 -747.28 -2.55 -13.19 16 23 C 0.09 1.17 10.16 127.77 1.30 2.47 16 24 C 0.09 0.98 9.40 127.77 1.20 2.18 16 25 C -0.21 -4.78 8.86 22.40 0.20 -4.58 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 28 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 29 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.41 14.27 8.54 -92.70 -0.79 13.48 16 31 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 1.96 8.04 -2.38 -0.02 1.94 16 34 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 35 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.14 1.96 6.73 -2.91 -0.02 1.94 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.76 7.92 -2.39 -0.02 0.75 16 40 H 0.06 0.94 6.20 -2.39 -0.01 0.92 16 41 H 0.06 0.55 7.95 -2.39 -0.02 0.54 16 42 H 0.09 0.58 7.79 -2.39 -0.02 0.57 16 43 H 0.05 0.55 7.95 -2.38 -0.02 0.53 16 44 H 0.12 2.71 6.14 -2.91 -0.02 2.69 16 Total: -1.00 -70.44 361.24 3.54 -66.90 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.19 Total: 26.63 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.94 Total: -9.19 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.57 Total: -98.55 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -70.44 3.54 -66.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189374650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.916 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds